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Conserved domains on  [gi|676326122|gb|KFO38593|]
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Melanoma-associated antigen B16, partial [Fukomys damarensis]

Protein Classification

MAGE domain-containing protein( domain architecture ID 2091)

MAGE (Melanoma-associated antigen) domain-containing protein similar to Homo sapiens melanoma-associated antigens that may play important physiological and pathological roles during embryogenesis, germ cell genesis, apoptosis, etc

CATH:  1.10.10.1210|1.10.10.1200
Gene Ontology:  GO:0000122
PubMed:  15222021|21093980
SCOP:  4006335

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MAGE super family cl03220
MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide ...
 16-99 2.05e-09

MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide variety of tumours but not in normal cells, with the exception of the male germ cells, placenta, and, possibly, cells of the developing embryo. The cellular function of this family is unknown. This family also contains the yeast protein, Nse3. The Nse3 protein is part of the Smc5-6 complex. Nse3 has been demonstrated to be important for meiosis.


The actual alignment was detected with superfamily member pfam01454:

Pssm-ID: 426270  Cd Length: 205  Bit Score: 53.43  E-value: 2.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 676326122   16 LLIIVLGVIIVQGNRASEECIWQVLEGFGVHPGQ--EHFIYGEPWKFITEDLVDEYYLVYHQVPNSDPA--RYEVVWGPR 91
Cdd:pfam01454 118 ILTVILSLILLSGGSISEQELLRYLRRLGIDTDGtkEIPPLNGNTDDLLKRLVKQGYLVRTKEGASDDGeeIIEYRVGPR 197


                  ....*...
gi 676326122   92 ALLETSKE 99
Cdd:pfam01454 198 AKVEFGPE 205
 
Name Accession Description Interval E-value
MAGE pfam01454
MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide ...
 16-99 2.05e-09

MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide variety of tumours but not in normal cells, with the exception of the male germ cells, placenta, and, possibly, cells of the developing embryo. The cellular function of this family is unknown. This family also contains the yeast protein, Nse3. The Nse3 protein is part of the Smc5-6 complex. Nse3 has been demonstrated to be important for meiosis.


Pssm-ID: 426270  Cd Length: 205  Bit Score: 53.43  E-value: 2.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 676326122   16 LLIIVLGVIIVQGNRASEECIWQVLEGFGVHPGQ--EHFIYGEPWKFITEDLVDEYYLVYHQVPNSDPA--RYEVVWGPR 91
Cdd:pfam01454 118 ILTVILSLILLSGGSISEQELLRYLRRLGIDTDGtkEIPPLNGNTDDLLKRLVKQGYLVRTKEGASDDGeeIIEYRVGPR 197


                  ....*...
gi 676326122   92 ALLETSKE 99
Cdd:pfam01454 198 AKVEFGPE 205
 
Name Accession Description Interval E-value
MAGE pfam01454
MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide ...
 16-99 2.05e-09

MAGE homology domain; The MAGE (melanoma antigen-encoding gene) family are expressed in a wide variety of tumours but not in normal cells, with the exception of the male germ cells, placenta, and, possibly, cells of the developing embryo. The cellular function of this family is unknown. This family also contains the yeast protein, Nse3. The Nse3 protein is part of the Smc5-6 complex. Nse3 has been demonstrated to be important for meiosis.


Pssm-ID: 426270  Cd Length: 205  Bit Score: 53.43  E-value: 2.05e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 676326122   16 LLIIVLGVIIVQGNRASEECIWQVLEGFGVHPGQ--EHFIYGEPWKFITEDLVDEYYLVYHQVPNSDPA--RYEVVWGPR 91
Cdd:pfam01454 118 ILTVILSLILLSGGSISEQELLRYLRRLGIDTDGtkEIPPLNGNTDDLLKRLVKQGYLVRTKEGASDDGeeIIEYRVGPR 197


                  ....*...
gi 676326122   92 ALLETSKE 99
Cdd:pfam01454 198 AKVEFGPE 205
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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