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Conserved domains on  [gi|1022763140|gb|KZS08800|]
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Lysozyme 2 [Daphnia magna]

Protein Classification

lyz_i domain-containing protein( domain architecture ID 13013924)

lyz_i domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
lyz_i cd16890
I-type lysozyme; Invertebrate type (I-type) lysozyme, initially identified in starfish and ...
 32-148 5.93e-51

I-type lysozyme; Invertebrate type (I-type) lysozyme, initially identified in starfish and marine bivalves, are found in various invertebrate phyla and are apparently ubiquitous in insects. Lysozymes cleave the beta-(1,4)-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan, the major bacterial cell wall polymer. I-type enzymes share structural similarity and the conserved glutamate catalytic residue of the lysozyme family.


:

Pssm-ID: 381611  Cd Length: 117  Bit Score: 158.66  E-value: 5.93e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022763140  32 DCLGCLCQASTGCNMTIPCTsgHQYLCGPFLISWAYWADAGKFVLANDDPERKGAFEACVQDAVCAGETVRGYMAKFAQD 111
Cdd:cd16890     1 DCLGCLCEAASGCNPTAGCS--MGGVCGPFRISKPYWQDAGKPVLPGDDPNRGGAFERCANDPYCAARTVRNYMARYGQD 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1022763140 112 CNGDGAINCDDYAHLHILGGFGCNAPiAQTPFYQGYL 148
Cdd:cd16890    79 CNGDGVIDCEDYARIHYLGPNGCKNQ-ETLGYWNRRF 114
 
Name Accession Description Interval E-value
lyz_i cd16890
I-type lysozyme; Invertebrate type (I-type) lysozyme, initially identified in starfish and ...
 32-148 5.93e-51

I-type lysozyme; Invertebrate type (I-type) lysozyme, initially identified in starfish and marine bivalves, are found in various invertebrate phyla and are apparently ubiquitous in insects. Lysozymes cleave the beta-(1,4)-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan, the major bacterial cell wall polymer. I-type enzymes share structural similarity and the conserved glutamate catalytic residue of the lysozyme family.


Pssm-ID: 381611  Cd Length: 117  Bit Score: 158.66  E-value: 5.93e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022763140  32 DCLGCLCQASTGCNMTIPCTsgHQYLCGPFLISWAYWADAGKFVLANDDPERKGAFEACVQDAVCAGETVRGYMAKFAQD 111
Cdd:cd16890     1 DCLGCLCEAASGCNPTAGCS--MGGVCGPFRISKPYWQDAGKPVLPGDDPNRGGAFERCANDPYCAARTVRNYMARYGQD 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1022763140 112 CNGDGAINCDDYAHLHILGGFGCNAPiAQTPFYQGYL 148
Cdd:cd16890    79 CNGDGVIDCEDYARIHYLGPNGCKNQ-ETLGYWNRRF 114
Destabilase pfam05497
Destabilase; Destabilase is an endo-epsilon(gamma-Glu)-Lys isopeptidase, which cleaves ...
 30-150 5.04e-50

Destabilase; Destabilase is an endo-epsilon(gamma-Glu)-Lys isopeptidase, which cleaves isopeptide bonds formed by transglutaminase (Factor XIIIa) between glutamine gamma-carboxamide and the epsilon-amino group of lysine.


Pssm-ID: 461666  Cd Length: 118  Bit Score: 156.31  E-value: 5.04e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022763140  30 PEDCLGCLCQASTGCNMTIPCtSGHQYLCGPFLISWAYWADAGKfvLANDDPERKGAFEACVQDAVCAGETVRGYMAKFA 109
Cdd:pfam05497   1 TEDCLGCICEASSGCNATAGC-HNDSLSCGPFRITWAYWQDAGK--PVGDKPSLEGAFENCANDPYCAADTVQNYMNKYA 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1022763140 110 QDCNGDGAINCDDYAHLHILGGFGCNAPIAQTPFYQGYLAC 150
Cdd:pfam05497  78 QDCNGDGVIDCEDYARIHKLGPNGCRKGELPSGYWNRFKKC 118
 
Name Accession Description Interval E-value
lyz_i cd16890
I-type lysozyme; Invertebrate type (I-type) lysozyme, initially identified in starfish and ...
 32-148 5.93e-51

I-type lysozyme; Invertebrate type (I-type) lysozyme, initially identified in starfish and marine bivalves, are found in various invertebrate phyla and are apparently ubiquitous in insects. Lysozymes cleave the beta-(1,4)-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan, the major bacterial cell wall polymer. I-type enzymes share structural similarity and the conserved glutamate catalytic residue of the lysozyme family.


Pssm-ID: 381611  Cd Length: 117  Bit Score: 158.66  E-value: 5.93e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022763140  32 DCLGCLCQASTGCNMTIPCTsgHQYLCGPFLISWAYWADAGKFVLANDDPERKGAFEACVQDAVCAGETVRGYMAKFAQD 111
Cdd:cd16890     1 DCLGCLCEAASGCNPTAGCS--MGGVCGPFRISKPYWQDAGKPVLPGDDPNRGGAFERCANDPYCAARTVRNYMARYGQD 78

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1022763140 112 CNGDGAINCDDYAHLHILGGFGCNAPiAQTPFYQGYL 148
Cdd:cd16890    79 CNGDGVIDCEDYARIHYLGPNGCKNQ-ETLGYWNRRF 114
Destabilase pfam05497
Destabilase; Destabilase is an endo-epsilon(gamma-Glu)-Lys isopeptidase, which cleaves ...
 30-150 5.04e-50

Destabilase; Destabilase is an endo-epsilon(gamma-Glu)-Lys isopeptidase, which cleaves isopeptide bonds formed by transglutaminase (Factor XIIIa) between glutamine gamma-carboxamide and the epsilon-amino group of lysine.


Pssm-ID: 461666  Cd Length: 118  Bit Score: 156.31  E-value: 5.04e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022763140  30 PEDCLGCLCQASTGCNMTIPCtSGHQYLCGPFLISWAYWADAGKfvLANDDPERKGAFEACVQDAVCAGETVRGYMAKFA 109
Cdd:pfam05497   1 TEDCLGCICEASSGCNATAGC-HNDSLSCGPFRITWAYWQDAGK--PVGDKPSLEGAFENCANDPYCAADTVQNYMNKYA 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1022763140 110 QDCNGDGAINCDDYAHLHILGGFGCNAPIAQTPFYQGYLAC 150
Cdd:pfam05497  78 QDCNGDGVIDCEDYARIHKLGPNGCRKGELPSGYWNRFKKC 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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