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Conserved domains on  [gi|160333500|ref|NP_001103987|]
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interferon induced protein with tetratricpeptide repeats 1B like 1 isoform 1 [Mus musculus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 19590209)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 62-289 2.97e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 78.11  E-value: 2.97e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  62 MHNLLAYVRHLKGQQEEALQSLKEAEALIQSEQlskRRLVTWGNCAWLHYHRGSLAEAQVYLDKVEkvckEFSSPFQYRL 141
Cdd:COG3914    3 AAALLALAALAAAALLAAAAAAELALAAELEAA---ALAAALGLALLLLAALAEAAAAALLALAAG----EAAAAAAALL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 142 ECAEMDCEEGWALLKCGiqNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLL 221
Cdd:COG3914   76 LLAALLELAALLLQALG--RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE-ALAALRRALALNPDFAEAYLNL 152

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 160333500 222 ALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQI 289
Cdd:COG3914  153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 160-461 5.52e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.15  E-value: 5.52e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 160 QNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDgTSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIE 239
Cdd:COG2956   22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD-RAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 240 ETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHkkrliqikkasnmqprgEDRKRADQs 319
Cdd:COG2956  101 KLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY-----------------LEQGDYDE- 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 320 ihlAICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNmsnlEDHIQQEIHFRYGNFQQYYKKSEEAaith 399
Cdd:COG2956  163 ---AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALE----QDPDYLPALPRLAELYEKLGDPEEA---- 231

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 160333500 400 ylkglkievtshyrdkpLKALEKLAKRRKEDHVLENLGLLgfvYKLKGNTSEAMSCYERALR 461
Cdd:COG2956  232 -----------------LELLRKALELDPSDDLLLALADL---LERKEGLEAALALLERQLR 273
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 62-289 2.97e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 78.11  E-value: 2.97e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  62 MHNLLAYVRHLKGQQEEALQSLKEAEALIQSEQlskRRLVTWGNCAWLHYHRGSLAEAQVYLDKVEkvckEFSSPFQYRL 141
Cdd:COG3914    3 AAALLALAALAAAALLAAAAAAELALAAELEAA---ALAAALGLALLLLAALAEAAAAALLALAAG----EAAAAAAALL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 142 ECAEMDCEEGWALLKCGiqNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLL 221
Cdd:COG3914   76 LLAALLELAALLLQALG--RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE-ALAALRRALALNPDFAEAYLNL 152

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 160333500 222 ALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQI 289
Cdd:COG3914  153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 160-461 5.52e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.15  E-value: 5.52e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 160 QNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDgTSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIE 239
Cdd:COG2956   22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD-RAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 240 ETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHkkrliqikkasnmqprgEDRKRADQs 319
Cdd:COG2956  101 KLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY-----------------LEQGDYDE- 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 320 ihlAICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNmsnlEDHIQQEIHFRYGNFQQYYKKSEEAaith 399
Cdd:COG2956  163 ---AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALE----QDPDYLPALPRLAELYEKLGDPEEA---- 231

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 160333500 400 ylkglkievtshyrdkpLKALEKLAKRRKEDHVLENLGLLgfvYKLKGNTSEAMSCYERALR 461
Cdd:COG2956  232 -----------------LELLRKALELDPSDDLLLALADL---LERKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 63-468 4.74e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.10  E-value: 4.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500   63 HNLLAYVRHLKGQQEEALQSLKEAEALIQSEQLSKRRLVTwgncawLHYHRGSLAEAQVYLDKVEKVCKefSSPFQYRLE 142
Cdd:TIGR02917 196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT------ILIEAGEFEEAEKHADALLKKAP--NSPLAHYLK 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  143 caemdceegwALLKCGIQNYKGAMACFAKALKVEPENPE--YNAGyaVVAYRLDHIDgTSLQHLQKAVSVKPEDPYLKVL 220
Cdd:TIGR02917 268 ----------ALVDFQKKNYEDARETLQDALKSAPEYLPalLLAG--ASEYQLGNLE-QAYQYLNQILKYAPNSHQARRL 334

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  221 LALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCH------K 294
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKlsqgdpS 414

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  295 KRLIQIKKASNMQPRGedrKRADQSIHL----------AICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKL 364
Cdd:TIGR02917 415 EAIADLETAAQLDPEL---GRADLLLILsylrsgqfdkALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  365 LNmsnledhIQQEIHFRYGNFQQYY--KKSEEAAITHYLKGLKIEVTShyrdkpLKALEKLAKrrkedhvlenlgllgfV 442
Cdd:TIGR02917 492 LS-------IEPDFFPAAANLARIDiqEGNPDDAIQRFEKVLTIDPKN------LRAILALAG----------------L 542

                         410       420
                  ....*....|....*....|....*..
gi 160333500  443 YKLKGNTSEAMSCYERALRL-TGAVNP 468
Cdd:TIGR02917 543 YLRTGNEEEAVAWLEKAAELnPQEIEP 569
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 160-470 4.71e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.02  E-value: 4.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  160 QNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIE 239
Cdd:TIGR02917 241 GEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED-ARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLN 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  240 ETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHkkrlIQIKKASNmqprgedrkradqs 319
Cdd:TIGR02917 320 QILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY----LALGDFEK-------------- 381

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  320 ihlAICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNM-SNLedhiqqeihfrygnfqqyyKKSEEAAIT 398
Cdd:TIGR02917 382 ---AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLdPEL-------------------GRADLLLIL 439

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 160333500  399 HYLKglkievtSHYRDKPLKALEKLAKRRKEDHVLENlgLLGFVYKLKGNTSEAMSCYERALRLtgavNPEF 470
Cdd:TIGR02917 440 SYLR-------SGQFDKALAAAKKLEKKQPDNASLHN--LLGAIYLGKGDLAKAREAFEKALSI----EPDF 498
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 161-248 5.32e-04

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 42.59  E-value: 5.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 161 NYKGAMACFAKALKVEPENPEYNAGYavvAYRL-DHID-GTSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHI 238
Cdd:PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAAL---GYALwDSGDiAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700

                         90
                 ....*....|
gi 160333500 239 EETLPRISSQ 248
Cdd:PRK09782 701 RLVIDDIDNQ 710
TPR_15 pfam13429
Tetratricopeptide repeat;
179-283 5.70e-03

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 38.49  E-value: 5.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  179 NPEYNAGYAVVAYRLDHidgtSLQHLQKAVSvkpedpylkvlLALKLQDLHKLEEAEKHIEEtLPRISSQPYVFGYVAKF 258
Cdd:pfam13429  91 RPKDAARLSELGWRRFR----SPRHLYSALY-----------LYERAGDYDRLARLLASLEE-LPAAEQSPAFWLARAEY 154

                          90       100
                  ....*....|....*....|....*
gi 160333500  259 YRRKGLVKEALEFLGRALQKQPCST 283
Cdd:pfam13429 155 YRQTGEPDAALRDYRRALALAPAST 179
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 62-289 2.97e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 78.11  E-value: 2.97e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  62 MHNLLAYVRHLKGQQEEALQSLKEAEALIQSEQlskRRLVTWGNCAWLHYHRGSLAEAQVYLDKVEkvckEFSSPFQYRL 141
Cdd:COG3914    3 AAALLALAALAAAALLAAAAAAELALAAELEAA---ALAAALGLALLLLAALAEAAAAALLALAAG----EAAAAAAALL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 142 ECAEMDCEEGWALLKCGiqNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLL 221
Cdd:COG3914   76 LLAALLELAALLLQALG--RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE-ALAALRRALALNPDFAEAYLNL 152

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 160333500 222 ALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQI 289
Cdd:COG3914  153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 160-461 5.52e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.15  E-value: 5.52e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 160 QNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDgTSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIE 239
Cdd:COG2956   22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD-RAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 240 ETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHkkrliqikkasnmqprgEDRKRADQs 319
Cdd:COG2956  101 KLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY-----------------LEQGDYDE- 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 320 ihlAICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNmsnlEDHIQQEIHFRYGNFQQYYKKSEEAaith 399
Cdd:COG2956  163 ---AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALE----QDPDYLPALPRLAELYEKLGDPEEA---- 231

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 160333500 400 ylkglkievtshyrdkpLKALEKLAKRRKEDHVLENLGLLgfvYKLKGNTSEAMSCYERALR 461
Cdd:COG2956  232 -----------------LELLRKALELDPSDDLLLALADL---LERKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 142-280 3.34e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 69.45  E-value: 3.34e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 142 ECAEMDCEEGWALLKCGiqNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLL 221
Cdd:COG4783    2 ACAEALYALAQALLLAG--DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDE-AIVLLHEALELDPDEPEARLNL 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 160333500 222 ALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQP 280
Cdd:COG4783   79 GLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
151-382 2.71e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.65  E-value: 2.71e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 151 GWALLKCGiqNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLALKLQDLHK 230
Cdd:COG0457   15 GLAYRRLG--RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEE-ALADYEQALELDPDDAEALNNLGLALQALGR 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 231 LEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHKKrLIQIKKASNMQPRG 310
Cdd:COG0457   92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK-LGRYEEALELLEKL 170

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 160333500 311 EDRKRADQSIHLAICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMSNLEDHIQQEIHFRY 382
Cdd:COG0457  171 EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 63-285 2.03e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 64.37  E-value: 2.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  63 HNLLAYVRHLKGQQEEALQSLKEAEALIQSEQLSKRRLvtwgncAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFQYRLE 142
Cdd:COG2956   45 HLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL------AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 143 CAEMDceegwallkcgiQNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDgTSLQHLQKAVSVKPEDPYLKVLLA 222
Cdd:COG2956  119 IYEQE------------GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD-EAIEALEKALKLDPDCARALLLLA 185

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 160333500 223 LKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFL 285
Cdd:COG2956  186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 63-468 4.74e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.10  E-value: 4.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500   63 HNLLAYVRHLKGQQEEALQSLKEAEALIQSEQLSKRRLVTwgncawLHYHRGSLAEAQVYLDKVEKVCKefSSPFQYRLE 142
Cdd:TIGR02917 196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT------ILIEAGEFEEAEKHADALLKKAP--NSPLAHYLK 267

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  143 caemdceegwALLKCGIQNYKGAMACFAKALKVEPENPE--YNAGyaVVAYRLDHIDgTSLQHLQKAVSVKPEDPYLKVL 220
Cdd:TIGR02917 268 ----------ALVDFQKKNYEDARETLQDALKSAPEYLPalLLAG--ASEYQLGNLE-QAYQYLNQILKYAPNSHQARRL 334

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  221 LALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCH------K 294
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKlsqgdpS 414

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  295 KRLIQIKKASNMQPRGedrKRADQSIHL----------AICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKL 364
Cdd:TIGR02917 415 EAIADLETAAQLDPEL---GRADLLLILsylrsgqfdkALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  365 LNmsnledhIQQEIHFRYGNFQQYY--KKSEEAAITHYLKGLKIEVTShyrdkpLKALEKLAKrrkedhvlenlgllgfV 442
Cdd:TIGR02917 492 LS-------IEPDFFPAAANLARIDiqEGNPDDAIQRFEKVLTIDPKN------LRAILALAG----------------L 542

                         410       420
                  ....*....|....*....|....*..
gi 160333500  443 YKLKGNTSEAMSCYERALRL-TGAVNP 468
Cdd:TIGR02917 543 YLRTGNEEEAVAWLEKAAELnPQEIEP 569
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
63-240 8.58e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.95  E-value: 8.58e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  63 HNLLAYVRHLKGQQEEALQSLKEAEAliqseqLSKRRLVTWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFQYRle 142
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALE------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL-- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 143 caemdceeGWALLKCGiqNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLA 222
Cdd:COG0457   83 --------GLALQALG--RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE-AIEAYERALELDPDDADALYNLG 151

                        170
                 ....*....|....*...
gi 160333500 223 LKLQDLHKLEEAEKHIEE 240
Cdd:COG0457  152 IALEKLGRYEEALELLEK 169
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 216-406 8.99e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 8.99e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 216 YLKVLLALKLQDLHKLEEAEKHIEETLPRISSQPYvfgYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHkk 295
Cdd:COG3914   48 LAALAEAAAAALLALAAGEAAAAAAALLLLAALLE---LAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLL-- 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 296 rliqikkasnmqprgEDRKRADQsihlAICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMSnlEDHIq 375
Cdd:COG3914  123 ---------------LALGRLEE----ALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD--PDNA- 180

                        170       180       190
                 ....*....|....*....|....*....|.
gi 160333500 376 qEIHFRYGNFQQYYKKSEEaAITHYLKGLKI 406
Cdd:COG3914  181 -EALNNLGNALQDLGRLEE-AIAAYRRALEL 209
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 220-462 3.26e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.90  E-value: 3.26e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 220 LLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHKKrliq 299
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK---- 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 300 ikkasnmqprgedRKRADQSIHLaichFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMSnledhiQQEIH 379
Cdd:COG2956   89 -------------AGLLDRAEEL----LEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG------PENAH 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 380 FRYGNFQQYYKKSE-EAAITHYLKGLKIEvtshyrdkplkaleklakrrkEDHVLENLgLLGFVYKLKGNTSEAMSCYER 458
Cdd:COG2956  146 AYCELAELYLEQGDyDEAIEALEKALKLD---------------------PDCARALL-LLAELYLEQGDYEEAIAALER 203


                 ....
gi 160333500 459 ALRL 462
Cdd:COG2956  204 ALEQ 207
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 160-470 4.71e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 62.02  E-value: 4.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  160 QNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIE 239
Cdd:TIGR02917 241 GEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED-ARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLN 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  240 ETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHkkrlIQIKKASNmqprgedrkradqs 319
Cdd:TIGR02917 320 QILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY----LALGDFEK-------------- 381

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  320 ihlAICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNM-SNLedhiqqeihfrygnfqqyyKKSEEAAIT 398
Cdd:TIGR02917 382 ---AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLdPEL-------------------GRADLLLIL 439

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 160333500  399 HYLKglkievtSHYRDKPLKALEKLAKRRKEDHVLENlgLLGFVYKLKGNTSEAMSCYERALRLtgavNPEF 470
Cdd:TIGR02917 440 SYLR-------SGQFDKALAAAKKLEKKQPDNASLHN--LLGAIYLGKGDLAKAREAFEKALSI----EPDF 498
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 63-279 5.46e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.13  E-value: 5.46e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  63 HNLLAYVRHLKGQQEEALQSLKEAEALIQSEQLSKRRLVTwgncawLHYHRGSLAEAQVYLDKVEKVCKEfssPFQYRLE 142
Cdd:COG2956   79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE------IYEQEGDWEKAIEVLERLLKLGPE---NAHAYCE 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 143 CAEMDCEEGwallkcgiqNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLA 222
Cdd:COG2956  150 LAELYLEQG---------DYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE-AIAALERALEQDPDYLPALPRLA 219

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 160333500 223 LKLQDLHKLEEAEKHIEETLpRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQ 279
Cdd:COG2956  220 ELYEKLGDPEEALELLRKAL-ELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 151-278 2.42e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 2.42e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 151 GWALLKcgIQNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLALKLQDLHK 230
Cdd:COG3914  119 GNLLLA--LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE-AIAALRRALELDPDNAEALNNLGNALQDLGR 195

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 160333500 231 LEEAEKHIEETLPRISSQPYVFGYVAkFYRRKGLVKEALEFLGRALQK 278
Cdd:COG3914  196 LEEAIAAYRRALELDPDNADAHSNLL-FALRQACDWEVYDRFEELLAA 242
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 150-242 4.27e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 4.27e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 150 EGWALLkcG-----IQNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLALK 224
Cdd:COG4235   18 EGWLLL--GraylrLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEE-AEELLERALALDPDNPEALYLLGLA 94

                         90
                 ....*....|....*...
gi 160333500 225 LQDLHKLEEAEKHIEETL 242
Cdd:COG4235   95 AFQQGDYAEAIAAWQKLL 112
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
102-279 4.29e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.94  E-value: 4.29e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 102 TWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFQYRlecaemdceeGWALLKCGiqNYKGAMACFAKALKVEPENPE 181
Cdd:COG0457   10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL----------GLAYLRLG--RYEEALADYEQALELDPDDAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 182 YNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRR 261
Cdd:COG0457   78 ALNNLGLALQALGRYEE-ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156

                        170
                 ....*....|....*...
gi 160333500 262 KGLVKEALEFLGRALQKQ 279
Cdd:COG0457  157 LGRYEEALELLEKLEAAA 174
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
208-436 5.77e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 5.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 208 VSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHF 287
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 288 QIGLCHkkrliqikkasnmqprgEDRKRADQsihlAICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNM 367
Cdd:COG0457   81 NLGLAL-----------------QALGRYEE----ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL 139

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 160333500 368 snleDHIQQEIHFRYGNFQQYYKKSEEaAITHYLKGLKIEVTSHYRDKPLKALEKLAKRRKEDHVLENL 436
Cdd:COG0457  140 ----DPDDADALYNLGIALEKLGRYEE-ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 165-280 5.87e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 5.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 165 AMACFAKALKVEPENPEYNAGYAVVAYRLDHIDgTSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPR 244
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYD-EALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 160333500 245 ISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQP 280
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 323-462 6.20e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 6.20e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 323 AICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMSNleDHIqqEIHFRYGNFqqYYKKSE-EAAITHYL 401
Cdd:COG3914   97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNP--DFA--EAYLNLGEA--LRRLGRlEEAIAALR 170

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 160333500 402 KGLKIevtshyrdkplkaleklakrrKEDHVlENLGLLGFVYKLKGNTSEAMSCYERALRL 462
Cdd:COG3914  171 RALEL---------------------DPDNA-EALNNLGNALQDLGRLEEAIAAYRRALEL 209
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 152-367 1.05e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.70  E-value: 1.05e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 152 WALLKCGIQNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDH--------IDGTSLQHLQKAVSVKPEDPYLKVLLAL 223
Cdd:COG3914    7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAAlaeaaaaaLLALAAGEAAAAAAALLLLAALLELAAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 224 KLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHkkrliqikka 303
Cdd:COG3914   87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL---------- 156

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 160333500 304 snmqprgEDRKRADQsihlAICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNM 367
Cdd:COG3914  157 -------RRLGRLEE----AIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
259-461 1.70e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.84  E-value: 1.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 259 YRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHKKRliqikkasnmqprGEDRKradqsihlAICHFKRTLELKPTYV 338
Cdd:COG4785   83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLL-------------GDYDA--------ALEDFDRALELDPDYA 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 339 MAYVTLAEMYIEKNQLKEAEDNFQKllnmsnledhiqqeihfrygnFQQYYKKSEEAAITHYLkglkievtSHYRDKPLK 418
Cdd:COG4785  142 YAYLNRGIALYYLGRYELAIADLEK---------------------ALELDPNDPERALWLYL--------AERKLDPEK 192

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 160333500 419 ALEKLAKRRkedhvlenlgllGFVYKLKGNTSEAMSCYERALR 461
Cdd:COG4785  193 ALALLLEDW------------ATAYLLQGDTEEARELFKLALA 223
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 161-242 5.61e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.19  E-value: 5.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 161 NYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEE 240
Cdd:COG5010   69 DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE-AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147


                 ..
gi 160333500 241 TL 242
Cdd:COG5010  148 AL 149
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
323-462 2.04e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.85  E-value: 2.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 323 AICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMsNLEDHiqqEIHFRYGNFQQYYKKSEEAaITHYLK 402
Cdd:COG0457   27 AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-DPDDA---EALNNLGLALQALGRYEEA-LEDYDK 101

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 403 GLKIEVTSHYrdkplkaleklakrrkedhVLENLGLlgfVYKLKGNTSEAMSCYERALRL 462
Cdd:COG0457  102 ALELDPDDAE-------------------ALYNLGL---ALLELGRYDEAIEAYERALEL 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
259-368 2.20e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.93  E-value: 2.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 259 YRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHKKRliqikkasnmqprgedrKRADQSIHlaichFKRTLELKPTYV 338
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ-----------------GRYDEAIA-----LEKALKLDPNNA 59

                         90       100       110
                 ....*....|....*....|....*....|
gi 160333500 339 MAYVTLAEMYIEKNQLKEAEDNFQKLLNMS 368
Cdd:COG3063   60 EALLNLAELLLELGDYDEALAYLERALELD 89
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
259-469 2.42e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.85  E-value: 2.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 259 YRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHKKRliqikkasnmqprgedrKRADQsihlAICHFKRTLELKPTYV 338
Cdd:COG0457   18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRL-----------------GRYEE----ALADYEQALELDPDDA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 339 MAYVTLAEMYIEKNQLKEAEDNFQKLLNMsNLEDHiqqEIHFRYGNFQQYYKKSEEAaITHYLKGLKIEvtshyrdkplk 418
Cdd:COG0457   77 EALNNLGLALQALGRYEEALEDYDKALEL-DPDDA---EALYNLGLALLELGRYDEA-IEAYERALELD----------- 140

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 160333500 419 aleklakrrkeDHVLENLGLLGFVYKLKGNTSEAMSCYERALRLTGAVNPE 469
Cdd:COG0457  141 -----------PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 181-295 2.82e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 2.82e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 181 EYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYR 260
Cdd:COG4783    5 EALYALAQALLLAGDYDE-AEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 160333500 261 RKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHKK 295
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
161-242 7.76e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 7.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 161 NYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDgtSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEE 240
Cdd:COG3063    7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYD--EAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                 ..
gi 160333500 241 TL 242
Cdd:COG3063   85 AL 86
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
331-462 1.82e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.15  E-value: 1.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 331 LELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMsnleDHIQQEIHFRYGNFQQYYKKSEEAaITHYLKGLKIEVTS 410
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL----DPDDAEALYNLGLAYLRLGRYEEA-LADYEQALELDPDD 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 160333500 411 HyrdkplkaleklakrrkedhvlENLGLLGFVYKLKGNTSEAMSCYERALRL 462
Cdd:COG0457   76 A----------------------EALNNLGLALQALGRYEEALEDYDKALEL 105
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 327-462 2.83e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 2.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 327 FKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMSNLEdhiqQEIHFRYGNFQQYYKKSEEAaithylkglki 406
Cdd:COG4783   27 LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE----PEARLNLGLALLKAGDYDEA----------- 91

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 160333500 407 evtshyrdkpLKALEKLAKRRKEDhvLENLGLLGFVYKLKGNTSEAMSCYERALRL 462
Cdd:COG4783   92 ----------LALLEKALKLDPEH--PEAYLRLARAYRALGRPDEAIAALEKALEL 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 323-462 6.06e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 6.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 323 AICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMSnlEDHIqqEIHFRYGNFQQYYKKSEEAaithylk 402
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--PDNA--DALLDLAEALLAAGDTEEA------- 70

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 403 glkievtshyrdkpLKALEKLAKRRKEDhvLENLGLLGFVYKLKGNTSEAMSCYERALRL 462
Cdd:COG4235   71 --------------EELLERALALDPDN--PEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 256-407 6.45e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.87  E-value: 6.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 256 AKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLChkkrliqikkasnmqprGEDRKRADQsihlAICHFKRTLELKP 335
Cdd:COG4783   11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEI-----------------LLQLGDLDE----AIVLLHEALELDP 69

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 160333500 336 TYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMSnlEDHIqqEIHFRYGNFQQYYKKSEEaAITHYLKGLKIE 407
Cdd:COG4783   70 DEPEARLNLGLALLKAGDYDEALALLEKALKLD--PEHP--EAYLRLARAYRALGRPDE-AIAALEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 256-368 1.40e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 1.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 256 AKFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGlchkkrliQIKKASNMQPRGEDrkradqsihlaicHFKRTLELKP 335
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLA--------EALLAAGDTEEAEE-------------LLERALALDP 82

                         90       100       110
                 ....*....|....*....|....*....|...
gi 160333500 336 TYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMS 368
Cdd:COG4235   83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 201-371 1.72e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 1.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 201 LQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQP 280
Cdd:COG5010    6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 281 CSTFLHFQIGLCHKKRliqikkasnmqprgedrKRADQsihlAICHFKRTLELKPTYVMAYVTLAEMYIEKNQLKEAEDN 360
Cdd:COG5010   86 NNPELYYNLALLYSRS-----------------GDKDE----AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144

                        170
                 ....*....|.
gi 160333500 361 FQKLLNMSNLE 371
Cdd:COG5010  145 LQRALGTSPLK 155
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 181-280 2.63e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 2.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 181 EYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYR 260
Cdd:COG5010   55 AIESPSDNLYNKLGDFEE-SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133

                         90       100
                 ....*....|....*....|
gi 160333500 261 RKGLVKEALEFLGRALQKQP 280
Cdd:COG5010  134 SLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
76-242 4.12e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.82  E-value: 4.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  76 QEEALQSLKEAEALIQSEQLSKRRLVTWgNCAWLHYHRGSLAEAQ-VYLDKVEKvckefSSPFQYRLECAEMDCEEGWAL 154
Cdd:COG4785   10 LALALAAAAASKAAILLAALLFAAVLAL-AIALADLALALAAAALaAAALAAER-----IDRALALPDLAQLYYERGVAY 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 155 LKCGiqNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEA 234
Cdd:COG4785   84 DSLG--DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDA-ALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160


                 ....*...
gi 160333500 235 EKHIEETL 242
Cdd:COG4785  161 IADLEKAL 168
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 63-214 5.10e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 5.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  63 HNLLAYVRHLKGQQEEALQSLKEAEALIQSEqlskrrlvtwgncawlhyhrgslAEAQVYLdkvekvckefsspfqyrle 142
Cdd:COG4783   41 FALLGEILLQLGDLDEAIVLLHEALELDPDE-----------------------PEARLNL------------------- 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 160333500 143 caemdceeGWALLKCGiqNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLDHIDGtSLQHLQKAVSVKPED 214
Cdd:COG4783   79 --------GLALLKAG--DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE-AIAALEKALELDPDD 139
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 161-248 5.32e-04

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 42.59  E-value: 5.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 161 NYKGAMACFAKALKVEPENPEYNAGYavvAYRL-DHID-GTSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHI 238
Cdd:PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAAL---GYALwDSGDiAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700

                         90
                 ....*....|
gi 160333500 239 EETLPRISSQ 248
Cdd:PRK09782 701 RLVIDDIDNQ 710
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 201-320 3.26e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 3.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500 201 LQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQP 280
Cdd:COG4235    3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 160333500 281 CSTFLHFQIGLCHKKR------LIQIKKASNMQPRGEDRKRADQSI 320
Cdd:COG4235   83 DNPEALYLLGLAAFQQgdyaeaIAAWQKLLALLPADAPARLLEASI 128
TPR_15 pfam13429
Tetratricopeptide repeat;
179-283 5.70e-03

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 38.49  E-value: 5.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  179 NPEYNAGYAVVAYRLDHidgtSLQHLQKAVSvkpedpylkvlLALKLQDLHKLEEAEKHIEEtLPRISSQPYVFGYVAKF 258
Cdd:pfam13429  91 RPKDAARLSELGWRRFR----SPRHLYSALY-----------LYERAGDYDRLARLLASLEE-LPAAEQSPAFWLARAEY 154

                          90       100
                  ....*....|....*....|....*
gi 160333500  259 YRRKGLVKEALEFLGRALQKQPCST 283
Cdd:pfam13429 155 YRQTGEPDAALRDYRRALALAPAST 179
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 63-462 7.49e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.91  E-value: 7.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500   63 HNLLAYVRHLKGQQEEALQSLKEAEAlIQSEQLSKRrlvtwGNCAWLHYHRGSLAEAQVYLDKVEKVckefsSPFQYRle 142
Cdd:TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALS-IEPDFFPAA-----ANLARIDIQEGNPDDAIQRFEKVLTI-----DPKNLR-- 534

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  143 caemdceegwALLK-CGIQNYKG----AMACFAKALKVEPENPEYNAGYAVvAYRLDHIDGTSLQHLQKAVSVKPEDPYL 217
Cdd:TIGR02917 535 ----------AILAlAGLYLRTGneeeAVAWLEKAAELNPQEIEPALALAQ-YYLGKGQLKKALAILNEAADAAPDSPEA 603

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  218 KVLLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVAKFYRRKGLVKEALEFLGRALQKQPCSTFLhfqiglchKKRL 297
Cdd:TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA--------QIGL 675

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  298 IQIKKASNmqpRGEDRKRADQSIHlaichfkrtlELKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMSNLEDHI--Q 375
Cdd:TIGR02917 676 AQLLLAAK---RTESAKKIAKSLQ----------KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAikL 742

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160333500  376 QEIHFRYGNFQQYYKKSE--------EAAITHYLKGLKIEvtSHYRDKPLKALEKLAKrRKEDH--VLENlglLGFVYkL 445
Cdd:TIGR02917 743 HRALLASGNTAEAVKTLEawlkthpnDAVLRTALAELYLA--QKDYDKAIKHYQTVVK-KAPDNavVLNN---LAWLY-L 815

                         410
                  ....*....|....*..
gi 160333500  446 KGNTSEAMSCYERALRL 462
Cdd:TIGR02917 816 ELKDPRALEYAERALKL 832
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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