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Conserved domains on  [gi|2551620783|ref|NP_001153892|]
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opticin isoform 2 precursor [Mus musculus]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1001123)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions; similar to Oryctolagus cuniculus monocyte differentiation antigen CD14, a coreceptor for bacterial lipopolysaccharide

Gene Ontology:  GO:0005515
PubMed:  11751054

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR super family cl34836
Leucine-rich repeat (LRR) protein [Transcription];
121-228 9.77e-10

Leucine-rich repeat (LRR) protein [Transcription];


The actual alignment was detected with superfamily member COG4886:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.41  E-value: 9.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 121 KLRRIDLSGNSISSIhNDALRLLPALQDLILPENQLAALPVLPSGI---EFLDVRLNRLQSsgiQPEAFVALKKLQFLYL 197
Cdd:COG4886   137 NLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDLPEELGNLtnlKELDLSNNQITD---LPEPLGNLTNLEELDL 212

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2551620783 198 ANNMLDSIPGPLPL--SLRSLHLQNNMIETMES 228
Cdd:COG4886   213 SGNQLTDLPEPLANltNLETLDLSNNQLTDLPE 245
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
121-228 9.77e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.41  E-value: 9.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 121 KLRRIDLSGNSISSIhNDALRLLPALQDLILPENQLAALPVLPSGI---EFLDVRLNRLQSsgiQPEAFVALKKLQFLYL 197
Cdd:COG4886   137 NLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDLPEELGNLtnlKELDLSNNQITD---LPEPLGNLTNLEELDL 212

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2551620783 198 ANNMLDSIPGPLPL--SLRSLHLQNNMIETMES 228
Cdd:COG4886   213 SGNQLTDLPEPLANltNLETLDLSNNQLTDLPE 245
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
122-270 3.02e-08

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 54.32  E-value: 3.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 122 LRRIDLSGNSISSIHNdalRLLPALQDLILPENQLAALP-VLPSGIEFLDVRLNRLQS------SGI-----QPEAFVAL 189
Cdd:PRK15370  243 IQEMELSINRITELPE---RLPSALQSLDLFHNKISCLPeNLPEELRYLSVYDNSIRTlpahlpSGIthlnvQSNSLTAL 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 190 KK-----LQFLYLANNMLDSIPGPLPLSLRSLHLQNNMIeTMESDTFCDTGEHRHERRQLEdIRLDGN-PINLSLFPEAY 263
Cdd:PRK15370  320 PEtlppgLKTLEAGENALTSLPASLPPELQVLDVSKNQI-TVLPETLPPTITTLDVSRNAL-TNLPENlPAALQIMQASR 397


                  ....*..
gi 2551620783 264 FCLPRLP 270
Cdd:PRK15370  398 NNLVRLP 404
LRR_8 pfam13855
Leucine rich repeat;
121-202 8.15e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.51  E-value: 8.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 121 KLRRIDLSGNSISSIHNDALRLLPALQDLILPENQLaalpvlpsgiefldvrlnrlqsSGIQPEAFVALKKLQFLYLANN 200
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLL----------------------TTLSPGAFSGLPSLRYLDLSGN 59


                  ..
gi 2551620783 201 ML 202
Cdd:pfam13855  60 RL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 121-254 9.68e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.47  E-value: 9.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 121 KLRRIDLSGNSISSIHNdaLRLLPALQDLILpENQlaalpVLPSGIEFLdvrlnrlqssgIQPEAFVALKK-LQFLYLAN 199
Cdd:cd21340    69 NLKKLYLGGNRISVVEG--LENLTNLEELHI-ENQ-----RLPPGEKLT-----------FDPRSLAALSNsLRVLNISG 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2551620783 200 NMLDSIPGPLPL-SLRSLHLQNNMIETMEsdtfcDTGEHRHERRQLEDIRLDGNPI 254
Cdd:cd21340   130 NNIDSLEPLAPLrNLEQLDASNNQISDLE-----ELLDLLSSWPSLRELDLTGNPV 180
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
121-228 9.77e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.41  E-value: 9.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 121 KLRRIDLSGNSISSIhNDALRLLPALQDLILPENQLAALPVLPSGI---EFLDVRLNRLQSsgiQPEAFVALKKLQFLYL 197
Cdd:COG4886   137 NLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLTDLPEELGNLtnlKELDLSNNQITD---LPEPLGNLTNLEELDL 212

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2551620783 198 ANNMLDSIPGPLPL--SLRSLHLQNNMIETMES 228
Cdd:COG4886   213 SGNQLTDLPEPLANltNLETLDLSNNQLTDLPE 245
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
122-270 3.02e-08

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 54.32  E-value: 3.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 122 LRRIDLSGNSISSIHNdalRLLPALQDLILPENQLAALP-VLPSGIEFLDVRLNRLQS------SGI-----QPEAFVAL 189
Cdd:PRK15370  243 IQEMELSINRITELPE---RLPSALQSLDLFHNKISCLPeNLPEELRYLSVYDNSIRTlpahlpSGIthlnvQSNSLTAL 319

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 190 KK-----LQFLYLANNMLDSIPGPLPLSLRSLHLQNNMIeTMESDTFCDTGEHRHERRQLEdIRLDGN-PINLSLFPEAY 263
Cdd:PRK15370  320 PEtlppgLKTLEAGENALTSLPASLPPELQVLDVSKNQI-TVLPETLPPTITTLDVSRNAL-TNLPENlPAALQIMQASR 397


                  ....*..
gi 2551620783 264 FCLPRLP 270
Cdd:PRK15370  398 NNLVRLP 404
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
121-227 5.84e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 53.01  E-value: 5.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 121 KLRRIDLSGNSISSIHnDALRLLPALQDLILPENQLAALPV----LPSgIEFLDVRLNRLQSsgiqPEAFVALKKLQFLY 196
Cdd:COG4886   183 NLKELDLSNNQITDLP-EPLGNLTNLEELDLSGNQLTDLPEplanLTN-LETLDLSNNQLTD----LPELGNLTNLEELD 256

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2551620783 197 LANNMLDSIPGPLPL-SLRSLHLQNNMIETME 227
Cdd:COG4886   257 LSNNQLTDLPPLANLtNLKTLDLSNNQLTDLK 288
LRR_8 pfam13855
Leucine rich repeat;
121-202 8.15e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.51  E-value: 8.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 121 KLRRIDLSGNSISSIHNDALRLLPALQDLILPENQLaalpvlpsgiefldvrlnrlqsSGIQPEAFVALKKLQFLYLANN 200
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLL----------------------TTLSPGAFSGLPSLRYLDLSGN 59


                  ..
gi 2551620783 201 ML 202
Cdd:pfam13855  60 RL 61
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
45-226 2.54e-05

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 45.54  E-value: 2.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783  45 GNHTLSIEDYNEV----IDLSNYEELADYGDQiPEAKISNLTLPTRTSPTSTVAQKTLSPNLTMAVPTTTGLlNSQSSHA 120
Cdd:PRK15387  116 GNYTVNCQGYSEThrltLDTAQGEEGTGHAEG-ASGTFRTSFLPATTAPQTPAEYDAVWSAWRRAAPAEESR-GRAAVVQ 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 121 KLRRIDLSGNSISSIHNDALRLLP-----ALQDLILPENQLAALPVLPSGIEFLDVRLNRLQSSGIQPEAFVAL------ 189
Cdd:PRK15387  194 KMRACLNNGNAVLNVGESGLTTLPdclpaHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELsifsnp 273

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 2551620783 190 --------KKLQFLYLANNMLDSIPgPLPLSLRSLHLQNNMIETM 226
Cdd:PRK15387  274 lthlpalpSGLCKLWIFGNQLTSLP-VLPPGLQELSVSDNQLASL 317
LRR_8 pfam13855
Leucine rich repeat;
169-223 3.91e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 40.59  E-value: 3.91e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2551620783 169 LDVRLNRLQSsgIQPEAFVALKKLQFLYLANNMLDSIPG----PLPlSLRSLHLQNNMI 223
Cdd:pfam13855   6 LDLSNNRLTS--LDDGAFKGLSNLKVLDLSNNLLTTLSPgafsGLP-SLRYLDLSGNRL 61
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 121-254 9.68e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.47  E-value: 9.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 121 KLRRIDLSGNSISSIHNdaLRLLPALQDLILpENQlaalpVLPSGIEFLdvrlnrlqssgIQPEAFVALKK-LQFLYLAN 199
Cdd:cd21340    69 NLKKLYLGGNRISVVEG--LENLTNLEELHI-ENQ-----RLPPGEKLT-----------FDPRSLAALSNsLRVLNISG 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2551620783 200 NMLDSIPGPLPL-SLRSLHLQNNMIETMEsdtfcDTGEHRHERRQLEDIRLDGNPI 254
Cdd:cd21340   130 NNIDSLEPLAPLrNLEQLDASNNQISDLE-----ELLDLLSSWPSLRELDLTGNPV 180
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
129-226 1.92e-04

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 42.84  E-value: 1.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 129 GNSISSIHndalRLLPALQDLILPENQLAALPVLPSGIEFLDVRLNRLQSSGIQPEAfvalkkLQFLYLANNMLDSIPgP 208
Cdd:PRK15387  291 GNQLTSLP----VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSG------LQELSVSDNQLASLP-T 359

                          90
                  ....*....|....*...
gi 2551620783 209 LPLSLRSLHLQNNMIETM 226
Cdd:PRK15387  360 LPSELYKLWAYNNRLTSL 377
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
122-255 3.25e-04

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 42.07  E-value: 3.25e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 122 LRRIDLSGNSISSI------------HNDALRLLP----ALQDLILPENQLAALPVLPSGIEFLDVRLNRLQSSGIQPEA 185
Cdd:PRK15387  304 LQELSVSDNQLASLpalpselcklwaYNNQLTSLPtlpsGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSG 383

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 186 fvalkkLQFLYLANNMLDSIPgPLPLSLRSLHLQNNMIET--MESDTFCDTGEHRHERRQLED----------IRLDGNP 253
Cdd:PRK15387  384 ------LKELIVSGNRLTSLP-VLPSELKELMVSGNRLTSlpMLPSGLLSLSVYRNQLTRLPEslihlssettVNLEGNP 456


                  ..
gi 2551620783 254 IN 255
Cdd:PRK15387  457 LS 458
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
53-225 1.46e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 39.53  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783  53 DYNEVIDLSNYEELADYGDQIPEAKISNLTLPTRTSPTSTVAQKTLSPNLTMAVPTTTGLLNSQSSHAKLRRIDLSGNSI 132
Cdd:COG4886     5 LLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 133 SSIHNDALRLLPALQDLILPENQ-LAALpvlpSGIEFLDVRLNRLQSsgiQPEAFVALKKLQFLYLANNMLDSIPGPLPL 211
Cdd:COG4886    85 LLLGLTDLGDLTNLTELDLSGNEeLSNL----TNLESLDLSGNQLTD---LPEELANLTNLKELDLSNNQLTDLPEPLGN 157

                         170
                  ....*....|....*.
gi 2551620783 212 --SLRSLHLQNNMIET 225
Cdd:COG4886   158 ltNLKSLDLSNNQLTD 173
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 121-232 3.87e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 38.11  E-value: 3.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 121 KLRRIDLSGNSISSIHNDA----LRLLPALQDLILPENQL--AALPVL------PSGIEFLDVRLNRLQSSGIQ--PEAF 186
Cdd:cd00116   138 ALEKLVLGRNRLEGASCEAlakaLRANRDLKELNLANNGIgdAGIRALaeglkaNCNLEVLDLNNNGLTDEGASalAETL 217

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2551620783 187 VALKKLQFLYLANNMLDS---------IPGPLPlSLRSLHLQNNMIETMESDTFC 232
Cdd:cd00116   218 ASLKSLEVLNLGDNNLTDagaaalasaLLSPNI-SLLTLSLSCNDITDDGAKDLA 271
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 110-223 4.79e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 38.29  E-value: 4.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2551620783 110 TGLLNSQSSHAKlrRIDLSGNSISSIHNDALRLLPALQDLILPENQLaalpvlpsgiefldvrlnrlqSSGIQPEAFVAL 189
Cdd:PLN00113   61 QGITCNNSSRVV--SIDLSGKNISGKISSAIFRLPYIQTINLSNNQL---------------------SGPIPDDIFTTS 117

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2551620783 190 KKLQFLYLANNMLD-SIPGPLPLSLRSLHLQNNMI 223
Cdd:PLN00113  118 SSLRYLNLSNNNFTgSIPRGSIPNLETLDLSNNML 152
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 190-227 7.37e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 36.69  E-value: 7.37e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2551620783 190 KKLQFLYLANNMLDSIPGPLPLS-LRSLHLQNNMIETME 227
Cdd:cd21340    24 KNLKVLYLYDNKITKIENLEFLTnLTHLYLQNNQIEKIE 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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