|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
49-361 |
2.99e-32 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 130.42 E-value: 2.99e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 49 LLGHFGCVNAIEFSNNGgQWLVSGGDDRRVLLWHMEQAihsrvKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILH 128
Cdd:COG2319 116 LTGHTGAVRSVAFSPDG-KTLASGSADGTVRLWDLATG-----KLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLW 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 129 DVES-ETLDVF-AHEDAVYGLSVSPvNDNIFASSSDDGRVLIWDIRESPhgEPFCLANYPSAFHSVMFNPvEPRLLATAN 206
Cdd:COG2319 190 DLATgKLLRTLtGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLATGK--LLRTLTGHSGSVRSVAFSP-DGRLLASGS 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 207 SKEGVGLWDIRKPQsSLLRYGGNLSlqSAMSVRFNSNGTQLLA------LRrrlppvLYDIHSRLPVFQFdnQGYFNSCT 280
Cdd:COG2319 266 ADGTVRLWDLATGE-LLRTLTGHSG--GVNSVAFSPDGKLLASgsddgtVR------LWDLATGKLLRTL--TGHTGAVR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 281 mkSCCFAGDrDQYILSGSDDFNLYMWripaDPEAGGIGRvvngafmVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWS 360
Cdd:COG2319 335 --SVAFSPD-GKTLASGSDDGTVRLW----DLATGELLR-------TLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
|
.
gi 545746355 361 P 361
Cdd:COG2319 401 L 401
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
49-360 |
1.17e-29 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 119.75 E-value: 1.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 49 LLGHFGCVNAIEFSNNGgQWLVSGGDDRRVLLWHMEQAIHSRvkpiQLKGeHHSNIFCLAFNSGNTKVFSGGNDEQVILH 128
Cdd:cd00200 5 LKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLR----TLKG-HTGPVRDVAASADGTYLASGSSDKTIRLW 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 129 DVESETL--DVFAHEDAVYGLSVSPvNDNIFASSSDDGRVLIWDIRESPhgepfCLANYPSAFHSVM---FNPvEPRLLA 203
Cdd:cd00200 79 DLETGECvrTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGK-----CLTTLRGHTDWVNsvaFSP-DGTFVA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 204 TAnSKEG-VGLWDIRKPQSSLLRYGGNLSLQSamsVRFNSNGTQLLA------LRrrlppvLYDIHSRLPVFQFD-NQGY 275
Cdd:cd00200 152 SS-SQDGtIKLWDLRTGKCVATLTGHTGEVNS---VAFSPDGEKLLSsssdgtIK------LWDLSTGKCLGTLRgHENG 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 276 FNSCtmkscCFAGDRDqYILSGSDDFNLYMWRIpadpeagGIGRVVngafMVLKGHRSIVNQVRFNPHTYMICSSGVEKI 355
Cdd:cd00200 222 VNSV-----AFSPDGY-LLASGSEDGTIRVWDL-------RTGECV----QTLSGHTNSVTSLAWSPDGKRLASGSADGT 284
|
....*
gi 545746355 356 IKIWS 360
Cdd:cd00200 285 IRIWD 289
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
139-170 |
2.90e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 41.91 E-value: 2.90e-05
10 20 30
....*....|....*....|....*....|..
gi 545746355 139 AHEDAVYGLSVSPvNDNIFASSSDDGRVLIWD 170
Cdd:smart00320 10 GHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
285-359 |
1.20e-04 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 45.71 E-value: 1.20e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 545746355 285 CFAgdrdQYILSGSDDFNLYMWRIPADPEAGgigRVVNGAFMVLKGHRSIVNQVRFNPHTYMI-CSSGVEKIIKIW 359
Cdd:PTZ00420 85 CFS----EILASGSEDLTIRVWEIPHNDESV---KEIKDPQCILKGHKKKISIIDWNPMNYYImCSSGFDSFVNIW 153
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
49-81 |
1.55e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.02 E-value: 1.55e-04
10 20 30
....*....|....*....|....*....|...
gi 545746355 49 LLGHFGCVNAIEFSNNGgQWLVSGGDDRRVLLW 81
Cdd:pfam00400 7 LEGHTGSVTSLAFSPDG-KLLASGSDDGTVKVW 38
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
49-361 |
2.99e-32 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 130.42 E-value: 2.99e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 49 LLGHFGCVNAIEFSNNGgQWLVSGGDDRRVLLWHMEQAihsrvKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILH 128
Cdd:COG2319 116 LTGHTGAVRSVAFSPDG-KTLASGSADGTVRLWDLATG-----KLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLW 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 129 DVES-ETLDVF-AHEDAVYGLSVSPvNDNIFASSSDDGRVLIWDIRESPhgEPFCLANYPSAFHSVMFNPvEPRLLATAN 206
Cdd:COG2319 190 DLATgKLLRTLtGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLATGK--LLRTLTGHSGSVRSVAFSP-DGRLLASGS 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 207 SKEGVGLWDIRKPQsSLLRYGGNLSlqSAMSVRFNSNGTQLLA------LRrrlppvLYDIHSRLPVFQFdnQGYFNSCT 280
Cdd:COG2319 266 ADGTVRLWDLATGE-LLRTLTGHSG--GVNSVAFSPDGKLLASgsddgtVR------LWDLATGKLLRTL--TGHTGAVR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 281 mkSCCFAGDrDQYILSGSDDFNLYMWripaDPEAGGIGRvvngafmVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWS 360
Cdd:COG2319 335 --SVAFSPD-GKTLASGSDDGTVRLW----DLATGELLR-------TLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWD 400
|
.
gi 545746355 361 P 361
Cdd:COG2319 401 L 401
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
49-360 |
1.17e-29 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 119.75 E-value: 1.17e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 49 LLGHFGCVNAIEFSNNGgQWLVSGGDDRRVLLWHMEQAIHSRvkpiQLKGeHHSNIFCLAFNSGNTKVFSGGNDEQVILH 128
Cdd:cd00200 5 LKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLR----TLKG-HTGPVRDVAASADGTYLASGSSDKTIRLW 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 129 DVESETL--DVFAHEDAVYGLSVSPvNDNIFASSSDDGRVLIWDIRESPhgepfCLANYPSAFHSVM---FNPvEPRLLA 203
Cdd:cd00200 79 DLETGECvrTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGK-----CLTTLRGHTDWVNsvaFSP-DGTFVA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 204 TAnSKEG-VGLWDIRKPQSSLLRYGGNLSLQSamsVRFNSNGTQLLA------LRrrlppvLYDIHSRLPVFQFD-NQGY 275
Cdd:cd00200 152 SS-SQDGtIKLWDLRTGKCVATLTGHTGEVNS---VAFSPDGEKLLSsssdgtIK------LWDLSTGKCLGTLRgHENG 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 276 FNSCtmkscCFAGDRDqYILSGSDDFNLYMWRIpadpeagGIGRVVngafMVLKGHRSIVNQVRFNPHTYMICSSGVEKI 355
Cdd:cd00200 222 VNSV-----AFSPDGY-LLASGSEDGTIRVWDL-------RTGECV----QTLSGHTNSVTSLAWSPDGKRLASGSADGT 284
|
....*
gi 545746355 356 IKIWS 360
Cdd:cd00200 285 IRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
3-361 |
3.83e-29 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 121.17 E-value: 3.83e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 3 RRAGLGGSMRSVVGFLSQRGLHGDPLLTQDFQRRRLRGcRNLYKKDLLGHFGCVNAIEFSNNGgQWLVSGGDDRRVLLWH 82
Cdd:COG2319 29 LLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAA-AGALLATLLGHTAAVLSVAFSPDG-RLLASASADGTVRLWD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 83 MEQAihsrvKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVES-ETLDVF-AHEDAVYGLSVSPvNDNIFASS 160
Cdd:COG2319 107 LATG-----LLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATgKLLRTLtGHSGAVTSVAFSP-DGKLLASG 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 161 SDDGRVLIWDIREsphGEPFC-LANYPSAFHSVMFNPvEPRLLATANSKEGVGLWDIRKPQsSLLRYGGNLSlqSAMSVR 239
Cdd:COG2319 181 SDDGTVRLWDLAT---GKLLRtLTGHTGAVRSVAFSP-DGKLLASGSADGTVRLWDLATGK-LLRTLTGHSG--SVRSVA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 240 FNSNGTQLLA------LRrrlppvLYDIHSRLPVFQFDNQgyfnSCTMKSCCFAGDrDQYILSGSDDFNLYMWRIPAdpe 313
Cdd:COG2319 254 FSPDGRLLASgsadgtVR------LWDLATGELLRTLTGH----SGGVNSVAFSPD-GKLLASGSDDGTVRLWDLAT--- 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 545746355 314 aggiGRVVNGafmvLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSP 361
Cdd:COG2319 320 ----GKLLRT----LTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDL 359
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
46-170 |
1.69e-13 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 71.98 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 46 KKDLLGHFGCVNAIEFSNNGGQwLVSGGDDRRVLLW--HMEQAIHsrvkpiQLKGeHHSNIFCLAFNSGNTKVFSGGNDE 123
Cdd:cd00200 170 VATLTGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWdlSTGKCLG------TLRG-HENGVNSVAFSPDGYLLASGSEDG 241
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 545746355 124 QVILHDVESETLD--VFAHEDAVYGLSVSPvNDNIFASSSDDGRVLIWD 170
Cdd:cd00200 242 TIRVWDLRTGECVqtLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
49-132 |
3.17e-09 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 59.92 E-value: 3.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 49 LLGHFGCVNAIEFSNNGgQWLVSGGDDRRVLLWHMEQAihsrvKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILH 128
Cdd:COG2319 326 LTGHTGAVRSVAFSPDG-KTLASGSDDGTVRLWDLATG-----ELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLW 399
|
....
gi 545746355 129 DVES 132
Cdd:COG2319 400 DLAT 403
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
139-170 |
2.90e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 41.91 E-value: 2.90e-05
10 20 30
....*....|....*....|....*....|..
gi 545746355 139 AHEDAVYGLSVSPvNDNIFASSSDDGRVLIWD 170
Cdd:smart00320 10 GHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
285-359 |
1.20e-04 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 45.71 E-value: 1.20e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 545746355 285 CFAgdrdQYILSGSDDFNLYMWRIPADPEAGgigRVVNGAFMVLKGHRSIVNQVRFNPHTYMI-CSSGVEKIIKIW 359
Cdd:PTZ00420 85 CFS----EILASGSEDLTIRVWEIPHNDESV---KEIKDPQCILKGHKKKISIIDWNPMNYYImCSSGFDSFVNIW 153
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
326-360 |
1.48e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 39.99 E-value: 1.48e-04
10 20 30
....*....|....*....|....*....|....*
gi 545746355 326 MVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWS 360
Cdd:smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
49-81 |
1.55e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.02 E-value: 1.55e-04
10 20 30
....*....|....*....|....*....|...
gi 545746355 49 LLGHFGCVNAIEFSNNGgQWLVSGGDDRRVLLW 81
Cdd:pfam00400 7 LEGHTGSVTSLAFSPDG-KLLASGSDDGTVKVW 38
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
139-170 |
2.21e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 39.25 E-value: 2.21e-04
10 20 30
....*....|....*....|....*....|..
gi 545746355 139 AHEDAVYGLSVSPvNDNIFASSSDDGRVLIWD 170
Cdd:pfam00400 9 GHTGSVTSLAFSP-DGKLLASGSDDGTVKVWD 39
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
19-223 |
3.00e-04 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 44.69 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 19 SQRGLHGDPLLTQ-----DFQRRRLRGcrNLYKKDLLGHFGCVNAIEFSNNGgQWLVSGGDDRRVLLWHME------QAI 87
Cdd:PLN00181 446 SRQGGWIDPFLEGlckylSFSKLRVKA--DLKQGDLLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECEsiikdgRDI 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 88 HSRVkpIQLKGEhhSNIFCLAFNSG-NTKVFSGGNDEQVILHDVESETL--DVFAHEDAVYGLSVSPVNDNIFASSSDDG 164
Cdd:PLN00181 523 HYPV--VELASR--SKLSGICWNSYiKSQVASSNFEGVVQVWDVARSQLvtEMKEHEKRVWSIDYSSADPTLLASGSDDG 598
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 545746355 165 RVLIWDIREsphGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSL 223
Cdd:PLN00181 599 SVKLWSINQ---GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
51-82 |
8.88e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 37.68 E-value: 8.88e-04
10 20 30
....*....|....*....|....*....|..
gi 545746355 51 GHFGCVNAIEFSNNGgQWLVSGGDDRRVLLWH 82
Cdd:smart00320 10 GHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
326-360 |
1.34e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 37.32 E-value: 1.34e-03
10 20 30
....*....|....*....|....*....|....*
gi 545746355 326 MVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWS 360
Cdd:pfam00400 5 KTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
42-177 |
1.39e-03 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 42.38 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 545746355 42 RNLYKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWHMEQAIhsRVKPIQLKgehhSNIFCLAF--NSGNTKVFsG 119
Cdd:PLN00181 564 RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTIKTK----ANICCVQFpsESGRSLAF-G 636
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 545746355 120 GNDEQVILHDVESETL---DVFAHEDAVYglSVSPVNDNIFASSSDDGRVLIWDIRESPHG 177
Cdd:PLN00181 637 SADHKVYYYDLRNPKLplcTMIGHSKTVS--YVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695
|
|
|