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heterochromatin protein 1-binding protein 3 isoform 2 [Homo sapiens]
H15 and Linker_histone domain-containing protein( domain architecture ID 10049420)
protein containing domains H15, Linker_histone, and valS
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
117-207 | 2.43e-21 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber : Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 88.06 E-value: 2.43e-21
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
304-371 | 5.94e-19 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. : Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 81.03 E-value: 5.94e-19
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
228-288 | 1.66e-10 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. : Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 56.76 E-value: 1.66e-10
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valS super family | cl36437 | valyl-tRNA synthetase; Provisional |
417-493 | 1.82e-04 | |||
valyl-tRNA synthetase; Provisional The actual alignment was detected with superfamily member PRK14900: Pssm-ID: 237855 [Multi-domain] Cd Length: 1052 Bit Score: 44.21 E-value: 1.82e-04
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Name | Accession | Description | Interval | E-value | |||
H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
117-207 | 2.43e-21 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 88.06 E-value: 2.43e-21
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
120-190 | 1.48e-20 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 85.27 E-value: 1.48e-20
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
304-371 | 5.94e-19 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 81.03 E-value: 5.94e-19
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H15 | smart00526 | Domain in histone families 1 and 5; |
117-183 | 1.45e-14 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 68.37 E-value: 1.45e-14
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
228-288 | 1.66e-10 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 56.76 E-value: 1.66e-10
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H15 | smart00526 | Domain in histone families 1 and 5; |
215-281 | 5.49e-10 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 55.28 E-value: 5.49e-10
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H15 | smart00526 | Domain in histone families 1 and 5; |
308-364 | 1.49e-09 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 54.12 E-value: 1.49e-09
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H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
308-374 | 2.71e-05 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 42.61 E-value: 2.71e-05
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valS | PRK14900 | valyl-tRNA synthetase; Provisional |
417-493 | 1.82e-04 | |||
valyl-tRNA synthetase; Provisional Pssm-ID: 237855 [Multi-domain] Cd Length: 1052 Bit Score: 44.21 E-value: 1.82e-04
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Name | Accession | Description | Interval | E-value | |||
H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
117-207 | 2.43e-21 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 88.06 E-value: 2.43e-21
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
120-190 | 1.48e-20 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 85.27 E-value: 1.48e-20
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
304-371 | 5.94e-19 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 81.03 E-value: 5.94e-19
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H15 | smart00526 | Domain in histone families 1 and 5; |
117-183 | 1.45e-14 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 68.37 E-value: 1.45e-14
|
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Linker_histone | pfam00538 | linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin ... |
228-288 | 1.66e-10 | |||
linker histone H1 and H5 family; Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. Pssm-ID: 459846 [Multi-domain] Cd Length: 71 Bit Score: 56.76 E-value: 1.66e-10
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H15 | smart00526 | Domain in histone families 1 and 5; |
215-281 | 5.49e-10 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 55.28 E-value: 5.49e-10
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H15 | smart00526 | Domain in histone families 1 and 5; |
308-364 | 1.49e-09 | |||
Domain in histone families 1 and 5; Pssm-ID: 197772 [Multi-domain] Cd Length: 66 Bit Score: 54.12 E-value: 1.49e-09
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H15 | cd00073 | linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, ... |
308-374 | 2.71e-05 | |||
linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber Pssm-ID: 238028 [Multi-domain] Cd Length: 88 Bit Score: 42.61 E-value: 2.71e-05
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valS | PRK14900 | valyl-tRNA synthetase; Provisional |
417-493 | 1.82e-04 | |||
valyl-tRNA synthetase; Provisional Pssm-ID: 237855 [Multi-domain] Cd Length: 1052 Bit Score: 44.21 E-value: 1.82e-04
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
421-515 | 4.28e-04 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 42.57 E-value: 4.28e-04
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
416-515 | 4.93e-04 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 42.18 E-value: 4.93e-04
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PRK13808 | PRK13808 | adenylate kinase; Provisional |
386-515 | 2.09e-03 | |||
adenylate kinase; Provisional Pssm-ID: 172341 [Multi-domain] Cd Length: 333 Bit Score: 40.26 E-value: 2.09e-03
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PLN02226 | PLN02226 | 2-oxoglutarate dehydrogenase E2 component |
428-515 | 3.28e-03 | |||
2-oxoglutarate dehydrogenase E2 component Pssm-ID: 177871 [Multi-domain] Cd Length: 463 Bit Score: 40.12 E-value: 3.28e-03
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Blast search parameters | ||||
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