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Conserved domains on  [gi|2213906110|ref|NP_001390282|]
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protein O-GlcNAcase isoform 5 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NAGidase super family cl06544
beta-N-acetylglucosaminidase; This family has previously been described as a hyaluronidase. ...
 67-187 1.07e-34

beta-N-acetylglucosaminidase; This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.


The actual alignment was detected with superfamily member pfam07555:

Pssm-ID: 429533  Cd Length: 293  Bit Score: 133.85  E-value: 1.07e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2213906110  67 EYCGTFcypnvsQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYK 146
Cdd:pfam07555 154 EYNGSW------DSPYLRTLGAKLDPDIQIMWTGDGVCSSEITVEDADRANEVIGRPPLIWDNYPVNDYAKDRLLLGPYT 227

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2213906110 147 GRSTELIPRLKGVLTNPNCEFEANYVAIHTLA--TWyksNMNG 187
Cdd:pfam07555 228 GRDPGLATHLAGIVSNPMEQAEASKVALFTVAdyAW---NPDG 267
RimI super family cl33885
Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal ...
 705-765 1.75e-03

Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal structure and biogenesis];


The actual alignment was detected with superfamily member COG0456:

Pssm-ID: 440224 [Multi-domain]  Cd Length: 92  Bit Score: 38.10  E-value: 1.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2213906110 705 VAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIAKMEGFPKD-VVILGRSL 765
Cdd:COG0456    30 IGRALLEAALERARERGARRLRLEVREDNEAAIALYEKLGFEEVGERPNYYGDdALVMEKEL 91
 
Name Accession Description Interval E-value
NAGidase pfam07555
beta-N-acetylglucosaminidase; This family has previously been described as a hyaluronidase. ...
 67-187 1.07e-34

beta-N-acetylglucosaminidase; This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.


Pssm-ID: 429533  Cd Length: 293  Bit Score: 133.85  E-value: 1.07e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2213906110  67 EYCGTFcypnvsQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYK 146
Cdd:pfam07555 154 EYNGSW------DSPYLRTLGAKLDPDIQIMWTGDGVCSSEITVEDADRANEVIGRPPLIWDNYPVNDYAKDRLLLGPYT 227

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2213906110 147 GRSTELIPRLKGVLTNPNCEFEANYVAIHTLA--TWyksNMNG 187
Cdd:pfam07555 228 GRDPGLATHLAGIVSNPMEQAEASKVALFTVAdyAW---NPDG 267
RimI COG0456
Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal ...
 705-765 1.75e-03

Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440224 [Multi-domain]  Cd Length: 92  Bit Score: 38.10  E-value: 1.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2213906110 705 VAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIAKMEGFPKD-VVILGRSL 765
Cdd:COG0456    30 IGRALLEAALERARERGARRLRLEVREDNEAAIALYEKLGFEEVGERPNYYGDdALVMEKEL 91
 
Name Accession Description Interval E-value
NAGidase pfam07555
beta-N-acetylglucosaminidase; This family has previously been described as a hyaluronidase. ...
 67-187 1.07e-34

beta-N-acetylglucosaminidase; This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.


Pssm-ID: 429533  Cd Length: 293  Bit Score: 133.85  E-value: 1.07e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2213906110  67 EYCGTFcypnvsQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYK 146
Cdd:pfam07555 154 EYNGSW------DSPYLRTLGAKLDPDIQIMWTGDGVCSSEITVEDADRANEVIGRPPLIWDNYPVNDYAKDRLLLGPYT 227

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2213906110 147 GRSTELIPRLKGVLTNPNCEFEANYVAIHTLA--TWyksNMNG 187
Cdd:pfam07555 228 GRDPGLATHLAGIVSNPMEQAEASKVALFTVAdyAW---NPDG 267
RimI COG0456
Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal ...
 705-765 1.75e-03

Ribosomal protein S18 acetylase RimI and related acetyltransferases [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440224 [Multi-domain]  Cd Length: 92  Bit Score: 38.10  E-value: 1.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2213906110 705 VAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEIAKMEGFPKD-VVILGRSL 765
Cdd:COG0456    30 IGRALLEAALERARERGARRLRLEVREDNEAAIALYEKLGFEEVGERPNYYGDdALVMEKEL 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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