NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2514344569|ref|NP_001409178|]
View 

formin-like protein 13 precursor [Oryza sativa Japonica Group]

Protein Classification

FH2 domain-containing protein( domain architecture ID 10490182)

FH2 domain-containing protein similar to formin homology proteins that control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarization

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
FH2 pfam02181
Formin Homology 2 Domain;
341-724 9.00e-119

Formin Homology 2 Domain;


:

Pssm-ID: 396655  Cd Length: 372  Bit Score: 362.36  E-value: 9.00e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 341 WDKLRAISGRTTVWDQVKnSDTFRVDEEAMESLFLNSGGGGAGSSDPAARRGGSGK--QERRLLDPKRLQNVAIMLKSLN 418
Cdd:pfam02181  16 WDKVRPSQDRGTVWDKLD-DESFELDGDLSELEELFSAKAKTKKNKKSEDKSSSKKkpKEVSLLDPKRAQNIAILLRKLK 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 419 VAADEVIGALVRGNPEDLGSEFYETLAKMAPTKEEELKLKGYSGDLSKIDPAERFLKDVLGVPFAFERVDAMLYRANFDN 498
Cdd:pfam02181  95 LPPEEIIQAILEGDEDALDLELLENLLKMAPTKEELKKLKEYKGDPSELGRAEQFLLELSKIPRLEARLRALLFKSTFEE 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 499 EVNYLRKSFGTLEAACEELRSSKLFLKLLDAVLKTGNRMNDGTNRGEARAFKLDTLLKLADIKSTDGRTTLLHFVVKEII 578
Cdd:pfam02181 175 EIEELKPSLEALEAASEELRNSRKFKKLLELILALGNYMNDGTRRGQAKGFKLSSLLKLSDTKSTDNKTTLLHYLVKIIR 254
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 579 RsegfdsdqsavnpgsgskeqfkrdGLKLLAGLSSELSNVKRAATLEMDTLSGNILRLEADLEKVKLVLQLKETCSDQga 658
Cdd:pfam02181 255 E------------------------KFPEVLDFSSELSHVKKAAKVNLEQLEKDVKQLERGLKKLERELELSALDEHP-- 308
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2514344569 659 SENFFQAMVVFLRRAEAEIKNMKTAEENALRLVKETTEYFhgDATKEEPHPLRIFVVVDEFLLILD 724
Cdd:pfam02181 309 DDKFREVLKEFLKSAEEKLDKLESLLREALELFKELVEYF--GEDPKETSPEEFFKILRDFLKEFK 372
 
Name Accession Description Interval E-value
FH2 pfam02181
Formin Homology 2 Domain;
341-724 9.00e-119

Formin Homology 2 Domain;


Pssm-ID: 396655  Cd Length: 372  Bit Score: 362.36  E-value: 9.00e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 341 WDKLRAISGRTTVWDQVKnSDTFRVDEEAMESLFLNSGGGGAGSSDPAARRGGSGK--QERRLLDPKRLQNVAIMLKSLN 418
Cdd:pfam02181  16 WDKVRPSQDRGTVWDKLD-DESFELDGDLSELEELFSAKAKTKKNKKSEDKSSSKKkpKEVSLLDPKRAQNIAILLRKLK 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 419 VAADEVIGALVRGNPEDLGSEFYETLAKMAPTKEEELKLKGYSGDLSKIDPAERFLKDVLGVPFAFERVDAMLYRANFDN 498
Cdd:pfam02181  95 LPPEEIIQAILEGDEDALDLELLENLLKMAPTKEELKKLKEYKGDPSELGRAEQFLLELSKIPRLEARLRALLFKSTFEE 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 499 EVNYLRKSFGTLEAACEELRSSKLFLKLLDAVLKTGNRMNDGTNRGEARAFKLDTLLKLADIKSTDGRTTLLHFVVKEII 578
Cdd:pfam02181 175 EIEELKPSLEALEAASEELRNSRKFKKLLELILALGNYMNDGTRRGQAKGFKLSSLLKLSDTKSTDNKTTLLHYLVKIIR 254
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 579 RsegfdsdqsavnpgsgskeqfkrdGLKLLAGLSSELSNVKRAATLEMDTLSGNILRLEADLEKVKLVLQLKETCSDQga 658
Cdd:pfam02181 255 E------------------------KFPEVLDFSSELSHVKKAAKVNLEQLEKDVKQLERGLKKLERELELSALDEHP-- 308
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2514344569 659 SENFFQAMVVFLRRAEAEIKNMKTAEENALRLVKETTEYFhgDATKEEPHPLRIFVVVDEFLLILD 724
Cdd:pfam02181 309 DDKFREVLKEFLKSAEEKLDKLESLLREALELFKELVEYF--GEDPKETSPEEFFKILRDFLKEFK 372
FH2 smart00498
Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, ...
341-731 8.70e-101

Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.


Pssm-ID: 214697 [Multi-domain]  Cd Length: 392  Bit Score: 316.60  E-value: 8.70e-101
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569  341 WDKLRAISGRTTVWDQVKnsDTFRVDEEAMESLFLNSGGGGAGSSDPAARRGGSGK---QERRLLDPKRLQNVAIMLKSL 417
Cdd:smart00498  15 WDKLNPSDLSGTVWDKID--EESEGDLDELEELFSAKEKTKSASKDVSEKKSILKKkasQEFKILDPKRSQNLAILLRKL 92
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569  418 NVAADEVIGALVRGNPEDLGSEFYETLAKMAPTKEEELKLKGYSG-DLSKIDPAERFLKDVLGVPFAFERVDAMLYRANF 496
Cdd:smart00498  93 HMSYEEIKEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEeDPEELARAEQFLLLISNIPYLEERLNALLFKANF 172
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569  497 DNEVNYLRKSFGTLEAACEELRSSKLFLKLLDAVLKTGNRMNDGTNRGEARAFKLDTLLKLADIKSTDGRTTLLHFVVKE 576
Cdd:smart00498 173 EEEVEDLKPQIEKVEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLKLSDVKSADNKTTLLHFLVKI 252
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569  577 IIRSegfdsdqsavnpgsgskeqFKRdGLKLLAGLSSELSNV----KRAATLEMDTLSGNILRLEADLEkvKLVLQLKET 652
Cdd:smart00498 253 IRKK-------------------YLG-GLSDPENLDDKFIEVmkpfLKAAKEKYDKLQKDLSDLKTRFE--KLVEYYGED 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569  653 CSDqGASENFFQAMVVFLRR----AEAEIKNMKTAEENALRLVKETTEYFHGDATKEEPHPLRIFVVVDEFLLILDRVCR 728
Cdd:smart00498 311 PKD-TSPEEFFKDFNEFLKEfskaAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLE 389

                   ...
gi 2514344569  729 DVG 731
Cdd:smart00498 390 ELG 392
 
Name Accession Description Interval E-value
FH2 pfam02181
Formin Homology 2 Domain;
341-724 9.00e-119

Formin Homology 2 Domain;


Pssm-ID: 396655  Cd Length: 372  Bit Score: 362.36  E-value: 9.00e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 341 WDKLRAISGRTTVWDQVKnSDTFRVDEEAMESLFLNSGGGGAGSSDPAARRGGSGK--QERRLLDPKRLQNVAIMLKSLN 418
Cdd:pfam02181  16 WDKVRPSQDRGTVWDKLD-DESFELDGDLSELEELFSAKAKTKKNKKSEDKSSSKKkpKEVSLLDPKRAQNIAILLRKLK 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 419 VAADEVIGALVRGNPEDLGSEFYETLAKMAPTKEEELKLKGYSGDLSKIDPAERFLKDVLGVPFAFERVDAMLYRANFDN 498
Cdd:pfam02181  95 LPPEEIIQAILEGDEDALDLELLENLLKMAPTKEELKKLKEYKGDPSELGRAEQFLLELSKIPRLEARLRALLFKSTFEE 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 499 EVNYLRKSFGTLEAACEELRSSKLFLKLLDAVLKTGNRMNDGTNRGEARAFKLDTLLKLADIKSTDGRTTLLHFVVKEII 578
Cdd:pfam02181 175 EIEELKPSLEALEAASEELRNSRKFKKLLELILALGNYMNDGTRRGQAKGFKLSSLLKLSDTKSTDNKTTLLHYLVKIIR 254
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569 579 RsegfdsdqsavnpgsgskeqfkrdGLKLLAGLSSELSNVKRAATLEMDTLSGNILRLEADLEKVKLVLQLKETCSDQga 658
Cdd:pfam02181 255 E------------------------KFPEVLDFSSELSHVKKAAKVNLEQLEKDVKQLERGLKKLERELELSALDEHP-- 308
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2514344569 659 SENFFQAMVVFLRRAEAEIKNMKTAEENALRLVKETTEYFhgDATKEEPHPLRIFVVVDEFLLILD 724
Cdd:pfam02181 309 DDKFREVLKEFLKSAEEKLDKLESLLREALELFKELVEYF--GEDPKETSPEEFFKILRDFLKEFK 372
FH2 smart00498
Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, ...
341-731 8.70e-101

Formin Homology 2 Domain; FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.


Pssm-ID: 214697 [Multi-domain]  Cd Length: 392  Bit Score: 316.60  E-value: 8.70e-101
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569  341 WDKLRAISGRTTVWDQVKnsDTFRVDEEAMESLFLNSGGGGAGSSDPAARRGGSGK---QERRLLDPKRLQNVAIMLKSL 417
Cdd:smart00498  15 WDKLNPSDLSGTVWDKID--EESEGDLDELEELFSAKEKTKSASKDVSEKKSILKKkasQEFKILDPKRSQNLAILLRKL 92
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569  418 NVAADEVIGALVRGNPEDLGSEFYETLAKMAPTKEEELKLKGYSG-DLSKIDPAERFLKDVLGVPFAFERVDAMLYRANF 496
Cdd:smart00498  93 HMSYEEIKEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEeDPEELARAEQFLLLISNIPYLEERLNALLFKANF 172
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569  497 DNEVNYLRKSFGTLEAACEELRSSKLFLKLLDAVLKTGNRMNDGTNRGEARAFKLDTLLKLADIKSTDGRTTLLHFVVKE 576
Cdd:smart00498 173 EEEVEDLKPQIEKVEAACEELRESKKFRKLLELILAIGNYMNGGSRRGQAYGFKLSSLLKLSDVKSADNKTTLLHFLVKI 252
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569  577 IIRSegfdsdqsavnpgsgskeqFKRdGLKLLAGLSSELSNV----KRAATLEMDTLSGNILRLEADLEkvKLVLQLKET 652
Cdd:smart00498 253 IRKK-------------------YLG-GLSDPENLDDKFIEVmkpfLKAAKEKYDKLQKDLSDLKTRFE--KLVEYYGED 310
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2514344569  653 CSDqGASENFFQAMVVFLRR----AEAEIKNMKTAEENALRLVKETTEYFHGDATKEEPHPLRIFVVVDEFLLILDRVCR 728
Cdd:smart00498 311 PKD-TSPEEFFKDFNEFLKEfskaAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLE 389

                   ...
gi 2514344569  729 DVG 731
Cdd:smart00498 390 ELG 392
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH