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U1 small nuclear ribonucleoprotein C [Homo sapiens]
C2H2-type zinc finger protein( domain architecture ID 10533256)
Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
zf-U1 | pfam06220 | U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) ... |
1-38 | 7.84e-20 | ||
U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilize U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. : Pssm-ID: 368798 Cd Length: 38 Bit Score: 77.09 E-value: 7.84e-20
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Name | Accession | Description | Interval | E-value | ||
zf-U1 | pfam06220 | U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) ... |
1-38 | 7.84e-20 | ||
U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilize U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. Pssm-ID: 368798 Cd Length: 38 Bit Score: 77.09 E-value: 7.84e-20
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COG5136 | COG5136 | U1 snRNP-specific protein C [RNA processing and modification]; |
1-47 | 1.07e-14 | ||
U1 snRNP-specific protein C [RNA processing and modification]; Pssm-ID: 227465 [Multi-domain] Cd Length: 188 Bit Score: 67.80 E-value: 1.07e-14
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ZnF_U1 | smart00451 | U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
1-37 | 4.32e-08 | ||
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 46.86 E-value: 4.32e-08
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Name | Accession | Description | Interval | E-value | ||
zf-U1 | pfam06220 | U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) ... |
1-38 | 7.84e-20 | ||
U1 zinc finger; This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilize U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. Pssm-ID: 368798 Cd Length: 38 Bit Score: 77.09 E-value: 7.84e-20
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COG5136 | COG5136 | U1 snRNP-specific protein C [RNA processing and modification]; |
1-47 | 1.07e-14 | ||
U1 snRNP-specific protein C [RNA processing and modification]; Pssm-ID: 227465 [Multi-domain] Cd Length: 188 Bit Score: 67.80 E-value: 1.07e-14
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ZnF_U1 | smart00451 | U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
1-37 | 4.32e-08 | ||
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 46.86 E-value: 4.32e-08
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Blast search parameters | ||||
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