NCBI Conserved Domain Search

Conserved domains on [gi|5836018|ref|NP_008778|]

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NADH dehydrogenase subunit 2 (mitochondrion) [Plestiodon egregius]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

ND2

MTH00112

NADH dehydrogenase subunit 2; Provisional

1-330

1.31e-144

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 412.29 E-value: 1.31e-144

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     1 MNPVMLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    81 TGTWDILQLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYLTQNSLSTTTLLMMGLL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   161 STLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMM 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   241 SALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYISTLTLAQSSTQTPHKWRFQPa 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKP- 319

                        330
                 ....*....|
gi 5836018   321 MKTAPTATMI 330
Cdd:MTH00112 320 KKNTLTATLT 329

Name

Accession

Description

Interval

E-value

ND2

MTH00112

NADH dehydrogenase subunit 2; Provisional

1-330

1.31e-144

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 412.29 E-value: 1.31e-144

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     1 MNPVMLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    81 TGTWDILQLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYLTQNSLSTTTLLMMGLL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   161 STLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMM 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   241 SALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYISTLTLAQSSTQTPHKWRFQPa 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKP- 319

                        330
                 ....*....|
gi 5836018   321 MKTAPTATMI 330
Cdd:MTH00112 320 KKNTLTATLT 329

NuoN

COG1007

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...

14-296

3.32e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase

Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 111.36 E-value: 3.32e-27

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   14 ALGTIITMSSHHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDI------ 86
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLagiaaa 191

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   87 LQLTNQP------ACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLY-------LTQNSLSTTT 153
Cdd:COG1007 192 LAAGGANspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveafPGLAADWQLL 271

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018  154 LLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNI----MLLNLALYILMTASTFMLLMSTSAK---- 225
Cdd:COG1007 272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLLSRKggea 351

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5836018  226 -TIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRL 296
Cdd:COG1007 352 eEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423

Proton_antipo_M

pfam00361

Proton-conducting membrane transporter; This is a family of membrane transporters that ...

23-268

6.64e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.

Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 107.40 E-value: 6.64e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     23 SHHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDILQLTNQP-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     94 ---ACIMLTMALSMKLGLAPLHFWLPEVLQGTPLK-TALIIVTWQKLAPLAL-----LYLTQNSLSTTTLLMMGLLSTLI 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    165 GGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNI----MLLNLALYILMTASTFMLLMS-----TSAKTIQDLTTVWP 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 5836018    236 ISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273

NDH_I_N

TIGR01770

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...

15-299

7.96e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]

Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 104.64 E-value: 7.96e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     15 LGTIITMSSHHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDILQLTNQP 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     94 ACIMLT------------MALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLA-LLYLTQNSLSTTT------L 154
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAvFLRLFLYILFGFSeawqifL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    155 LMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNI----MLLNLALYILMTASTFMLLMSTS------A 224
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRsykdewI 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5836018    225 KTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYI 299
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV 427

Name

Accession

Description

Interval

E-value

ND2

MTH00112

NADH dehydrogenase subunit 2; Provisional

1-330

1.31e-144

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 412.29 E-value: 1.31e-144

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     1 MNPVMLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    81 TGTWDILQLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYLTQNSLSTTTLLMMGLL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   161 STLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMM 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   241 SALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYISTLTLAQSSTQTPHKWRFQPa 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKP- 319

                        330
                 ....*....|
gi 5836018   321 MKTAPTATMI 330
Cdd:MTH00112 320 KKNTLTATLT 329

ND2

MTH00135

NADH dehydrogenase subunit 2; Provisional

1-331

3.36e-141

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 403.42 E-value: 3.36e-141

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     1 MNPVMLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    81 TGTWDILQLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYLTQNSlSTTTLLMMGLL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   161 STLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMM 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   241 SALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYISTLTLAQSSTQTPHKWRFQPA 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330
                 ....*....|.
gi 5836018   321 MKTAPTATMIV 331
Cdd:MTH00135 320 QLTLPLAISTT 330

ND2

MTH00070

NADH dehydrogenase subunit 2; Provisional

1-331

1.82e-134

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 386.58 E-value: 1.82e-134

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     1 MNPVMLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWS 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    81 TGTWDILQLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYLTQNSLSTTTLLMMGLL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   161 STLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMM 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   241 SALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYISTLTLAQSSTQTPHKWRFQPA 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330
                 ....*....|.
gi 5836018   321 MKTaPTATMIV 331
Cdd:MTH00070 321 TNN-LLSLTII 330

ND2

MTH00105

NADH dehydrogenase subunit 2; Provisional

1-331

8.60e-125

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 361.86 E-value: 8.60e-125

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     1 MNPVMLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWS 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    81 TGTWDILQLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYLTQNSLSTTTLLMMGLL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   161 STLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMM 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   241 SALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYISTLTLAQSSTQTPHKWRFQPA 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330
                 ....*....|.
gi 5836018   321 MKTAPTATMIV 331
Cdd:MTH00105 321 KPMTLLPTLII 331

ND2

MTH00200

NADH dehydrogenase subunit 2; Provisional

1-316

7.40e-97

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 290.72 E-value: 7.40e-97

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     1 MNPVMLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWS 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    81 TGTWDILQLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYLTQNSLSTTTLLMMGLL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   161 STLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMM 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 5836018   241 SALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYISTLTLAQSSTQTPHKWR 316
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR 316

ND2

MTH00041

NADH dehydrogenase subunit 2; Validated

1-304

1.03e-93

NADH dehydrogenase subunit 2; Validated

Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 282.97 E-value: 1.03e-93

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     1 MNPVMLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWS 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    81 TGTWDILQLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYLTQNSLSTTTLLMMGLL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   161 STLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMM 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5836018   241 SALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYISTLTL 304
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTL 304

ND2

MTH00160

NADH dehydrogenase subunit 2; Provisional

1-298

1.28e-59

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 194.66 E-value: 1.28e-59

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     1 MNPVMLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWS 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    81 tgtwdiLQLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYLTQNSlstTTLLMMGLL 160
Cdd:MTH00160  82 ------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN---NFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   161 STLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMM 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 5836018   241 SALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSY 298
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY 290

ND2

MTH00144

NADH dehydrogenase subunit 2; Provisional

5-302

1.73e-59

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 194.33 E-value: 1.73e-59

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     5 MLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    85 DILqltnqpacIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALL-YLTQNSLSTTTLLMMGLLSTL 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsNFLDLYWLAYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   164 IGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPiSPMMSAL 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKP-SYKTGLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 5836018   244 MLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYISTL 302
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294

ND2

MTH00011

NADH dehydrogenase subunit 2; Validated

6-311

8.10e-48

NADH dehydrogenase subunit 2; Validated

Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 164.18 E-value: 8.10e-48

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     6 LSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTInawstgTWD 85
Cdd:MTH00011   8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    86 ILQLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYLTQNSLSTTTLLMMGLLSTLIG 165
Cdd:MTH00011  82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   166 GWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMMSALML 245
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 5836018   246 MLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYISTLTLAQSSTQT 311
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLK 307

ND2

MTH00197

NADH dehydrogenase subunit 2; Provisional

7-298

3.24e-43

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 151.75 E-value: 3.24e-43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     7 SIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTgtwdi 86
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL----- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    87 lqLTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLylTQNSLSTTTLLMMGLLSTLIGG 166
Cdd:MTH00197  76 --YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   167 WGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMMSALMLM 246
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 5836018   247 LLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSY 298
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283

NuoN

COG1007

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...

14-296

3.32e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase

Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 111.36 E-value: 3.32e-27

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   14 ALGTIITMSSHHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDI------ 86
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLagiaaa 191

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   87 LQLTNQP------ACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLY-------LTQNSLSTTT 153
Cdd:COG1007 192 LAAGGANspllllGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveafPGLAADWQLL 271

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018  154 LLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNI----MLLNLALYILMTASTFMLLMSTSAK---- 225
Cdd:COG1007 272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVILLLSRKggea 351

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5836018  226 -TIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRL 296
Cdd:COG1007 352 eEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423

Proton_antipo_M

pfam00361

Proton-conducting membrane transporter; This is a family of membrane transporters that ...

23-268

6.64e-27

Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 107.40 E-value: 6.64e-27

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     23 SHHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDILQLTNQP-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     94 ---ACIMLTMALSMKLGLAPLHFWLPEVLQGTPLK-TALIIVTWQKLAPLAL-----LYLTQNSLSTTTLLMMGLLSTLI 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    165 GGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNI----MLLNLALYILMTASTFMLLMS-----TSAKTIQDLTTVWP 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 5836018    236 ISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273

ND2

MTH00199

NADH dehydrogenase subunit 2; Provisional

7-299

1.93e-26

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 108.95 E-value: 1.93e-26

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     7 SIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWD 85
Cdd:MTH00199 100 PILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETS 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    86 ILQ----LTNQPACIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALlyLTQNSLSTTTLLMMGLLS 161
Cdd:MTH00199 180 IQGinsiLTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSI--LVQIGPVTNVVLICAVLS 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   162 TLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATN----IMLLNLALYILMTASTFMLLMSTSAKT--IQDLTTVWP 235
Cdd:MTH00199 258 IIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSR 337

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5836018   236 ISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYI 299
Cdd:MTH00199 338 KNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQI 401

ND2

MTH00196

NADH dehydrogenase subunit 2; Provisional

13-299

4.10e-26

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 106.65 E-value: 4.10e-26

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    13 LALGTIITMSSHHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDI--LQL 89
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    90 TNQPAC-----------IMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLALLYltQNSLSTTTLLMMG 158
Cdd:MTH00196  82 VLNSGQsfssvsvpigyLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   159 LLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLAT----NIMLLNLALYILMTASTFMLLMSTSAKT--IQDLTT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5836018   233 VWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYI 299
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIVKI 306

PRK05777

NADH-quinone oxidoreductase subunit NuoN;

14-296

1.21e-25

NADH-quinone oxidoreductase subunit NuoN;

Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 106.83 E-value: 1.21e-25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    14 ALGTIITMSSHHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDILQLTNQ 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    93 PA------------CIMLTMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLA----LLYLTQNSLSTT---T 153
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAvllrLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   154 LLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM----AAILTLATNIMLLNLALYILMTASTF--MLLMST---SA 224
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglAAGTAEGYSAVLFYLLAYLFMTLGAFgvISLLRRkggEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5836018   225 KTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRL 296
Cdd:PRK05777 353 ESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424

NDH_I_N

TIGR01770

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...

15-299

7.96e-25

Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 104.64 E-value: 7.96e-25

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     15 LGTIITMSSHHWLLAWIGLELNTLAIIPIIA-KQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDILQLTNQP 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     94 ACIMLT------------MALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLAPLA-LLYLTQNSLSTTT------L 154
Cdd:TIGR01770 193 SNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAvFLRLFLYILFGFSeawqifL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    155 LMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNI----MLLNLALYILMTASTFMLLMSTS------A 224
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRsykdewI 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5836018    225 KTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYI 299
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKV 427

HyfB

COG0651

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...

30-299

3.40e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];

Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 87.90 E-value: 3.40e-19

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   30 WIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDILQLTN----------QPACIMLT 99
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018  100 MALSMKLGLAPLHFWLPE-----------VLQGTPLKTAL--IIVTWqklaplALLYLTQNSLSTTTLLM-MGLLSTLIG 165
Cdd:COG0651 213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVL------TLLFGADPALFLGTLLLvLGLLTMLVG 286

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018  166 GWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYI----LMTASTFM----LLMSTSAKTIQDLTTVWPIS 237
Cdd:COG0651 287 ALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLaagaIERATGTRDLDKLGGLGKRM 366

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5836018  238 PMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYI 299
Cdd:COG0651 367 PLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428

ND2

MTH00198

NADH dehydrogenase subunit 2; Provisional

13-296

1.40e-15

NADH dehydrogenase subunit 2; Provisional

Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 77.59 E-value: 1.40e-15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    13 LALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRAT---------EATTKYFLTQAAASATVLFSS------TIN 77
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCalyfgfTGN 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    78 AWSTGTwdILQLTNQPACIML----------TMALSMKLGLAPLHFWLPEVLQGTPLKTALIIVTWQKLapLALLYLTQN 147
Cdd:MTH00198 277 EGMLGT--ILSATLETTNIELrqgslgylfiTVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSL 352

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   148 SLSTTTLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLN----LALYILMTASTFMLLMSTS 223
Cdd:MTH00198 353 VITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQAswtyAVTYLVSALASFTVICTLE 432

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   224 ---------------------AKTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMM 282
Cdd:MTH00198 433 efgtrtptsrqrdgsfgnynlVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIY 512

                        330       340
                 ....*....|....*....|.
gi 5836018   283 ALSALL-------SLFFYLRL 296
Cdd:MTH00198 513 YLVALFaiictciSAFYYIRI 533

PRK08375

putative monovalent cation/H+ antiporter subunit D; Reviewed

33-298

1.03e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 62.59 E-value: 1.03e-10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    33 LELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDILQLTNQP--------ACIMLTMALSM 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALaenptvvtAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   105 KLGLAPLHFWLPEVLQGT-PLKTALIIVTWQKLA--PLALLYLT------QNSLSTTTLLM-MGLLSTLIGGWGGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAApPVVTALLSGLVTKVAvyALIRIYFTvfggdfRFALGLGWLLAvLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   175 TRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYI----LMTASTFMLL----MSTSAKTIQDLTTVWPISPMMSALMLM 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhaLMKGALFLAAgaieVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 5836018   247 LLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSY 298
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426

ndhB

CHL00049

NADH dehydrogenase subunit 2

51-263

1.91e-09

NADH dehydrogenase subunit 2

Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 58.48 E-value: 1.91e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    51 RATEATTKYFLTQAAASATVLFS-STINAWSTGTWDI---------LQLTNQPAC----IMLTMALSMKLGLAPLHFWLP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   117 EVLQGTPLKTALIIVTWQKLAPLAL----LYLTQNSLSTTTLLMMGLLSTL---IGGWGGLNQTQTRKIMAFSSIAHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALatriFDIPFYFSSNEWHLLLEILAILsmiLGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   190 -MAAILTLATNI----MLLNLALYILMTASTFMLLMSTSAKT----IQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGF 260
Cdd:CHL00049 319 vIIGIIVGDSNDgyasMITYMLFYIFMNLGTFACIVLFGLRTgtdnIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398


                 ...
gi 5836018   261 MPK 263
Cdd:CHL00049 399 FGK 401

PRK12667

putative monovalent cation/H+ antiporter subunit D; Reviewed

101-299

3.08e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 58.06 E-value: 3.08e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   101 ALSMKLGLAPLHFWLPEVLQG--TPLKTAL--IIVTWQKLAPLALLYLTQNSLSTTT---------LLMMGLLSTLIGGW 167
Cdd:PRK12667 232 AFTIKAAIFPNHFWLPDAHPAapSPVSAMLsgLVVNVGAYAIIRFLYTIFGISPSLIdfraalspiLIILGAVSAIIGAL 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   168 GGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYILMTA-STFMLLMST-----SAKT--IQDLTTVWPISPM 239
Cdd:PRK12667 312 MMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAiAKSLLFLASgvfihAAGTrdIDELAGLGRKMPI 391

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   240 MSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYI 299
Cdd:PRK12667 392 ASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451

ND5

MTH00020

NADH dehydrogenase subunit 5; Reviewed

72-308

1.50e-07

NADH dehydrogenase subunit 5; Reviewed

Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 52.77 E-value: 1.50e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    72 FSSTINAWSTGTWDILQLTnqpaCIMLT---MALSMKLGLaplHFWLPEVLQGTPLKTALIIVTWQKLAPLALL-----Y 143
Cdd:MTH00020 194 FSSVFNMVVSAPSSDITLI----CLFLFigaVGKSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLLirsspL 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   144 LTQNSLSTTTLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMaailTLATNIMLLNLALYILMTASTFMLLMSTS 223
Cdd:MTH00020 267 FEQAPLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYM----VVACGLSHYSISLFHLMNHAFFKALLFLS 342

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   224 AKTI-------QDLTTVWPIS---PMMSALMLMLLMSLAGLPPFTGFMPKWLILQ-ELTTHSLSTTATMMALSALLSLFF 292
Cdd:MTH00020 343 AGSVihalsdeQDMRKMGGLIsflPLTYIFFLIGSLSLMGFPYLTGFYSKDLILElAFGQYYLIFAYWLGCFSALLTAFY 422

                        250
                 ....*....|....*.
gi 5836018   293 YLRLSYISTLTLAQSS 308
Cdd:MTH00020 423 SIRLIYLTFLSNTNLK 438

PRK08376

putative monovalent cation/H+ antiporter subunit D; Reviewed

33-266

6.96e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 50.87 E-value: 6.96e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    33 LELNTLAIIPIIAKQHH-PRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDI----------LQLTNQPACIMLTMA 101
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMaylavkmsenPTVVAKIALALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   102 LSMKLGLAPLHFWLPEVLQGTP--LKTALIIVTWQKLAPLA--LLYLTQNSLSTTTL----LMMGLLSTLIGGWGGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALArvLFSIYGPAINLATVgwviIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   174 QTRKIMAFSSIAHLGWM-----AAILTLATNIM-----------LLNLALYILMTASTFM----LLMSTSAKTIQDLTTV 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgVGLAALGDPAMasygeialaggIYHIVNHALYKALLFLtagaVIYETGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 5836018   234 WPISPMMSALMLMLLMSLAGLPPFTGFMPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422

PRK12644

putative monovalent cation/H+ antiporter subunit A; Reviewed

80-287

1.41e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed

Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 49.92 E-value: 1.41e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    80 STGTWDILQLTNQP----------ACImLTMALSmKLGLAPLHFWLPEVLQG-TP----------LKTALIIVTwqKLAP 138
Cdd:PRK12644 183 AAGTYRLSELLADPptgpavsvavVLI-LVGALS-KSAIVPFHFWLPGAMAApTPvsaylhaaamVKAGIYLVA--RLAP 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   139 lallyltqnSLSTT-----TLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLAT-NIMLLNLALYI--- 209
Cdd:PRK12644 259 ---------GFADVpvwrpTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTrDAALAGLAMLLaha 329

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   210 LMTASTFMLL----MSTSAKTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALS 285
Cdd:PRK12644 330 LFKAALFLVVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVLA 409


                 ..
gi 5836018   286 AL 287
Cdd:PRK12644 410 GI 411

PRK08377

NADH dehydrogenase subunit N; Validated

33-299

1.74e-06

NADH dehydrogenase subunit N; Validated

Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 49.38 E-value: 1.74e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    33 LELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTGTWDILQLTNQPACIMLTMAL----SMKLGL 108
Cdd:PRK08377 137 MEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIAQLAGTIDPTVAQvglaLLIFGL 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   109 A------PLHFWLPEVLQGTP----LKTALIIVTWQKLAPLALLYLTQNSLSTTTLL----MMGLLSTLIGGWGGLNQTQ 174
Cdd:PRK08377 217 AveaelfPLNAWAPDAYQAAPhpitVMFSAFVVKAGLYAMARILYLMQNANGWSSVLklviIMATLTVFFAELSALRQKN 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   175 TRKIMAFSSIAHLGWMAAILTLATNI--------MLLNLALYILMTASTFMLLMSTSAKTIQDLTTVWPISPMMSALMLM 246
Cdd:PRK08377 297 VKRMIAYSSIGQVGMIALALALGTQAgvdagvfhMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTI 376

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 5836018   247 LLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRLSYI 299
Cdd:PRK08377 377 GALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLIHT 429

PRK02504

NAD(P)H-quinone oxidoreductase subunit N;

50-263

1.96e-06

NAD(P)H-quinone oxidoreductase subunit N;

Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 49.28 E-value: 1.96e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    50 PRATEATTKYFLTQAAASATVLFSST----INAWSTGTWDI-LQLTNQP---ACIMLTMAL---SMKLGLAPLHFWLPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIaLALITSPslgLALALVFVIagiAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   119 LQGTPLKTALIIVTWQKLA--PLALLYLTQNSLSTTT-----LLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMA 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAgfALAIRLLVTAFPSFDEqwkllFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   192 AILTLATN----IMLLNLALYILMTASTFMLLMSTSAKT----IQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPK 263
Cdd:PRK02504 317 IGLVAGTEagyaSMVFYLLAYLFMNLGAFACVILFSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396

PRK06458

hydrogenase 4 subunit F; Validated

5-268

5.28e-06

hydrogenase 4 subunit F; Validated

Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 48.00 E-value: 5.28e-06

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     5 MLSIFISSLALgtiiTMSSHHWLLAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAASA-----TVLFSSTINAW 79
Cdd:PRK06458 113 MYQLFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAfalfgTILVYANAATV 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    80 STGTWDILQLTN--------QPACIMLTMALSM-----KLGLAPLHFWLPE-----------VLQGTPLKTALIIVTWQK 135
Cdd:PRK06458 189 MGDGEMAILWTEllkhasllDPTLMKLAFVFLLigfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYY 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   136 LAPLALLyltQNSLSTTTLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAaiLTLATNIMLLNLALYILMTAST 215
Cdd:PRK06458 269 ILIDAAI---GSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIA--FALGIGGPLGIFAALLHMLNHS 343

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 5836018   216 FM----------LLMSTSAKTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQ 268
Cdd:PRK06458 344 LTksaiffasgnVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406

NuoL

COG1009

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...

78-296

9.91e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase

Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 47.07 E-value: 9.91e-06

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   78 AWSTGTWDILQLTNQ-----------PACIMLTMALSMKLGLAPLHFWLPEVLQG-TP---------LKTA---LIIvtw 133
Cdd:COG1009 186 GAIAGTLNFSELLAAaptilssplltLILLLLLLGAFGKSAQFPLHFWLPDAMEGpTPvsallhaatMVKAgvyLLA--- 262

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018  134 qKLAPLallyLTQNSLSTTTLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMaailTLATNIMLLNLALYILMTA 213
Cdd:COG1009 263 -RLSPL----FALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYM----FLALGVGAYVAALFHLLTH 333

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018  214 STFMLLMSTSAKTI------QDLTT---VWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQE-LTTHSLSTTATMMA 283
Cdd:COG1009 334 AFFKALLFLGAGSVihatgtRDIRKmggLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAVA 413

                       250
                ....*....|....
gi 5836018  284 -LSALLSLFFYLRL 296
Cdd:COG1009 414 lLGAFLTAFYSFRL 427

PRK08676

hydrogenase membrane subunit; Validated

28-295

2.66e-05

hydrogenase membrane subunit; Validated

Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 45.90 E-value: 2.66e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    28 LAWIGLELNTLAIIPIIAKQHHPRATEATTKYFLTQAAA------SATVLFSSTINAWSTGT--WDIL---------QLT 90
Cdd:PRK08676 126 LFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTlnWTELaahasllspSVL 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    91 NQPACIMLTmALSMKLGLAPLHFWLPEVLQGTP-LKTALIIVTWQKLAPLALLYLT----QNSLSTT---TLLMMGLLST 162
Cdd:PRK08676 206 GASFLFIFI-GFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSallrQSGAAEQfsnVLIGLGIFSI 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   163 LIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNI----MLLNLALYILMTASTF----MLLMSTSAKTIQDLTTVW 234
Cdd:PRK08676 285 AVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLalfwMLFHMLAHSLVKSGLFfsagILHRQYRSDRFDRIFDVF 364

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5836018   235 PISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTAT---MMALSALLSLFFYLR 295
Cdd:PRK08676 365 RLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAvllLLLLAASSFAIFLLK 428

PRK12662

putative monovalent cation/H+ antiporter subunit D; Reviewed

92-296

3.24e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 45.50 E-value: 3.24e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    92 QPACIMLTMALSMKLGLAPLHFWLPEVLQGTPlktALIIVTWQKLAPLALLYLT---------QNSLSTT-----TLLMM 157
Cdd:PRK12662 209 QIGVLFIMVGLFIKAALFPFHKWLIQAYSEAP---SFISVFFSGTSTKVMIYLIirivydvfkANFVFTTlpfnnVFMIL 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   158 GLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYI----LMTASTFMLLMSTSAK----TIQD 229
Cdd:PRK12662 286 AALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIvnhsIVKSALFMVSGSISYHfgttKLED 365

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5836018   230 LTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRL 296
Cdd:PRK12662 366 CLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432

PRK12665

putative monovalent cation/H+ antiporter subunit D; Reviewed

96-268

4.69e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 44.96 E-value: 4.69e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    96 IMLTMALSMKLGLAPLHFWLPEVLQGTP-LKTALIIVTWQKLAPLAL-----LYLTQNSLSTTtLLMMGLLSTLIGGWGG 169
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPaPVTAVFAGLLTKVGVYAIirthtLLFPGGGLDTL-LMVVALLTMVVGILGA 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   170 LNQTQTRKIMAFSSIAHLGWMAAILTLATNIMLLNLALYIL--MTASTFMLLMS------TSAKTIQDLTTVWPISPMMS 241
Cdd:PRK12665 292 IAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAhhITVQTTLFLVVglierqAGSSSLRRLGGLAKASPLLA 371

                        170       180
                 ....*....|....*....|....*..
gi 5836018   242 ALMLMLLMSLAGLPPFTGFMPKWLILQ 268
Cdd:PRK12665 372 VLFFVPALNLGGIPPFSGFIGKVALLE 398

PRK08668

NADH dehydrogenase subunit M; Validated

2-298

7.51e-05

NADH dehydrogenase subunit M; Validated

Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 44.60 E-value: 7.51e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     2 NPVMLSIFISSLALGTIITMSSHHWLLAWIGLELNTLAIIPIIAKQHHpRATEATTKYFLTQAAASATVLFSSTINAWST 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    82 GTWDILQLTNQ-----------PACIMLTMALSMKLGLAPLHFWLPE-----------VLQGTPLKT-ALIIVTWQKLAP 138
Cdd:PRK08668 175 GTFDFADISQGlindtstgfalIVFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   139 LALLYLTQNSLSTTTLL-----MMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLATNIML-------LNLA 206
Cdd:PRK08668 255 GTKLFSEFGTYRGVPLFnyilaWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvFNHA 334

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   207 LY-ILMTASTFMLLMSTSAKTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALS 285
Cdd:PRK08668 335 LFkGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFG 414

                        330
                 ....*....|...
gi 5836018   286 ALLSLFFYLRLSY 298
Cdd:PRK08668 415 SIGSFLYVFRPLA 427

PRK12663

Na+/H+ antiporter subunit D;

96-296

1.24e-04

Na+/H+ antiporter subunit D;

Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 43.79 E-value: 1.24e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    96 IMLTMALSMKLGLAPLhFWLPEVLQGTPLK-TALIIVTWQKLAPLAL------LYLTQNSLSTTTLLMMGLLSTLIGGWG 168
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHTPNTEvAALFAALLTKVGIYALirvftlLFPQERELLHPLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   169 GLNQTQTRKIMAFSSIAHLGWMAAILTLAT------------NIMLLNLALYILmtASTFMLLmsTSAKTIQDLTTVWPI 236
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLGLALGTpagingaifylvHDMVVKTALFLI--AGSLVRL--TGYRSLQYLGGLYRK 365

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   237 SPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMALSALLSLFFYLRL 296
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425

NDH_I_M

TIGR01972

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...

55-268

2.16e-04

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]

Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 43.00 E-value: 2.16e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     55 ATTKYFLTQAAASATVLFSSTINAWSTG-TWDILQLTNQP--------ACIMLTMALSMKLGLAPLHFWLPEV-LQGTPL 124
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGgTFDLLELLNLPlpfgvqtwLFLAFFIAFAVKVPLFPLHTWLPDAhVEAPTA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    125 KTALIIVTWQKLAPLALL-----YLTQNSLSTTTLLM-MGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM----AAIL 194
Cdd:TIGR01972 237 GSVILAGVLLKMGTYGFLrfnlpLFPDASLYFAPVLAaLGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVllgiFSFN 316

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5836018    195 TLATNIMLLNLALYILMTASTFMLL----MSTSAKTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQ 268
Cdd:TIGR01972 317 ELGISGAVFQMISHGLITAALFLLVgvlyERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394

PRK06589

putative monovalent cation/H+ antiporter subunit D; Reviewed

2-308

3.24e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed

Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 42.50 E-value: 3.24e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     2 NPVMLSIFISSLALGTIITMSSHhWLLAWIGLELNTLAIIPIIAkqhHPRATEATT--KYFLTQAAASATVLFSSTINAW 79
Cdd:PRK06589 115 SSRFLFFFNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIG---HTRNNISLSggYKYLKILMISALLLFLPAVILI 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    80 --STGTWDILQ---LTNQPACIMLTMALSM--KLGLAPLHFWLPE-VLQGTPL----------KTALIIVTWQKLAPLAL 141
Cdd:PRK06589 191 ytKTGNLDFVSgglFSKNQSIILLLMFIYGiaKTAIFPVHSWLPAaMVAHYPVsallhavivvKTGLFCIYKILLYIFGL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   142 LYLTQNSLSTTTLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWM---AAILT-LATNIMLLNLALYILMTASTFM 217
Cdd:PRK06589 271 SYLQRIFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLAllsAFILTpKALGAAILHLVSHSFAKICLFY 350

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   218 LLMS----TSAKTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTATMMAL-----SALL 288
Cdd:PRK06589 351 SMGSiyslKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLvviasSILS 430

                        330       340
                 ....*....|....*....|
gi 5836018   289 SLFFYLRLSYISTLTLAQSS 308
Cdd:PRK06589 431 ALYLLKILSSIYKPSLSENS 450

NuoM

COG1008

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...

38-188

3.47e-04

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase

Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 42.38 E-value: 3.47e-04

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   38 LAIIP---IIAKQHHPRATEATTKYFLTQAAASATVLFSSTINAWSTG--TWDILQLTNQP--------ACIMLTMALSM 104
Cdd:COG1008 142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGalTFDIAELAAAPlpltaqllLFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018  105 KLGLAPLHFWLPE-----------VLQGTPLKT---ALIIVTWQkLAPLALLYLTqnslstTTLLMMGLLSTLIGGWGGL 170
Cdd:COG1008 222 KVPMFPFHTWLPDahveaptagsvLLAGVLLKMggyGLLRFALP-LFPEASAYFA------PLLAALGVIGIIYGALVAL 294

                       170
                ....*....|....*...
gi 5836018  171 NQTQTRKIMAFSSIAHLG 188
Cdd:COG1008 295 AQTDLKRLIAYSSVSHMG 312

PRK12561

NAD(P)H-quinone oxidoreductase subunit 4; Provisional

55-226

5.89e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional

Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 41.56 E-value: 5.89e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    55 ATTKYFLTQAAASATVLFSSTINAWSTG--TWDILQLTNQPACIMLTM--------ALSMKLGLAPLHFWLPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDtfTFDLAELGAKSYPLALELllyagfliAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   118 ----VLQGTPLKT---ALIIVTWQKLaPLALLYLTqnslstTTLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGW- 189
Cdd:PRK12561 218 pvsmILAGVLLKMggyALIRFNVQML-PDAHVYFA------PALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFv 290

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 5836018   190 ---MAAILTLATNIMLLNLALYILMTASTFMLLMSTSAKT 226
Cdd:PRK12561 291 llgIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERT 330

ND5

MTH00032

NADH dehydrogenase subunit 5; Provisional

111-268

9.60e-04

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 41.10 E-value: 9.60e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   111 LHFWLPEVLQGTPLKTALIIVTWQKLAPLALL-----YLTQNSLSTTTLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIA 185
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   186 HLGWMAAILTL--ATNIMLLNLALY------ILMTASTFMLLMSTSAKTIQDLTTVWPISPMMSALMLMLLMSLAGLPPF 257
Cdd:MTH00032 324 QLGYMVLIIGIegSHNVGLFHLVNHaffkalLFLSAGSVIHSTTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYL 403

                        170
                 ....*....|.
gi 5836018   258 TGFMPKWLILQ 268
Cdd:MTH00032 404 TGFYSKDLILE 414

ND4

MTH00226

NADH dehydrogenase subunit 4; Provisional

100-211

2.21e-03

NADH dehydrogenase subunit 4; Provisional

Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 39.90 E-value: 2.21e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   100 MALSMKLGLAPLHFWLPEVLQGTPLKTALIIV-TWQKLAPLALLYLTQNSLS------TTTLLMMGLLSTLIGGWGGLNQ 172
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGLVRLSWPILPlgaqnlAPAVIAMGIVGIVYGSFATCRQ 317

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 5836018   173 TQTRKIMAFSSIAHLGwMAAILTLATNIMLLNLALYILM 211
Cdd:MTH00226 318 IDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIML 355

PRK12646

DUF4040 family protein;

81-291

4.12e-03

DUF4040 family protein;

Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 38.97 E-value: 4.12e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    81 TGTWDILQLTNQ-----------PACIMLTMALSMKLGLAPLHFWLPEVLQG-TPLKTALIIVTWQKlAPLALLY----- 143
Cdd:PRK12646 188 TGTNNITEILGQadhiknhglfiPMIFMFLLGAFTKSAQFPFHIWLPRAMAApTPVSAYLHSATMVK-AGIFLLFrftpl 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   144 LTQNSLSTTTLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLA-------------TNIMLLNLALYIL 210
Cdd:PRK12646 267 LGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasIYVFVLFAALFHL 346

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   211 MTASTF--MLLM-------STSAKTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLIL------QELTTHSL 275
Cdd:PRK12646 347 MNHAIFkcALFMgvgiidhEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLdaltqtGQLSQFSL 426

                        250
                 ....*....|....*.
gi 5836018   276 STTATMMALSALLSLF 291
Cdd:PRK12646 427 ISMIIIVFIGVIASIF 442

PRK12650

DUF4040 family protein;

110-263

6.44e-03

DUF4040 family protein;

Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 38.49 E-value: 6.44e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   110 PLHFWLPEVLQG-TPLKTALIIVTWQKLAPLALL----YLTQNSLSTTTLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSI 184
Cdd:PRK12650 226 PFHFWLPEAMAAiTPVSAFLHAAAVVKAGIYLLLrfspVFHDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTV 305

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   185 AHLGWMAAILTLATNIML----LNLALYILMTASTFMLL----MSTSAKTIQDLTTVWPISPMMSALMLMLLMSLAGLPP 256
Cdd:PRK12650 306 SQLGWIVATIGVGTPFALtaavVHTLAHALFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPP 385


                 ....*..
gi 5836018   257 FTGFMPK 263
Cdd:PRK12650 386 LFGFVSK 392

NADH_dehy_S2_C

pfam06444

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...

291-331

7.31e-03

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.

Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 34.16 E-value: 7.31e-03

                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 5836018    291 FFYLRLSYISTLTLAQSSTQTPHKWRFQPAMKTAPTATMIV 331
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTT 41

ND5

MTH00151

NADH dehydrogenase subunit 5; Provisional

143-301

8.21e-03

NADH dehydrogenase subunit 5; Provisional

Pssm-ID: 214436 [Multi-domain] Cd Length: 565 Bit Score: 37.90 E-value: 8.21e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   143 YLTQNSLSTTTLLMMGLLSTLIGGWGGLNQTQTRKIMAFSSIAHLGWMAAILTLAtnimLLNLALYILMTASTF------ 216
Cdd:MTH00151 232 FLSSSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLG----MPSLALFHLYTHALFkallfl 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018   217 ----MLLMSTSAKTIQDLTTVWPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQELTTHSLSTTAT-MMALSALLSLF 291
Cdd:MTH00151 308 cagsIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVlLMFVGVGLTAL 387

                        170
                 ....*....|
gi 5836018   292 FYLRLSYIST 301
Cdd:MTH00151 388 YSARLSFCLV 397

NDH_I_L

TIGR01974

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...

94-299

9.43e-03

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]

Pssm-ID: 273905 [Multi-domain] Cd Length: 609 Bit Score: 37.65 E-value: 9.43e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018     94 ACIMLTMALSMKLGLAPLHFWLPEVLQG-TPLkTALI----IVTW-----QKLAPLALlyLTQNSLSTTTLLmmGLLSTL 163
Cdd:TIGR01974 215 ICLLLFIGAMGKSAQLPLHTWLPDAMEGpTPV-SALIhaatMVTAgvylvARTSPLFE--LSPTALYLVTII--GAITAL 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5836018    164 IGGWGGLNQTQTRKIMAFSSIAHLGWMaailTLATNIMLLNLALYILMTASTFMLLMSTSA----------KTIQDLTTV 233
Cdd:TIGR01974 290 FAATVALVQNDIKRILAYSTMSQLGYM----FLALGVGAYAAAIFHLMTHAFFKALLFLGAgsvihamhheQDIRKMGGL 365

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 5836018    234 WPISPMMSALMLMLLMSLAGLPPFTGFMPKWLILQE-LTTHSLSTTATMMALSALLSLFFYLRLSYI 299
Cdd:TIGR01974 366 RKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAaFASGTHSFLFVAGLIGAFLTAFYSFRLIFM 432

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01