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Conserved domains on  [gi|6321409|ref|NP_011486|]
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Cgr1p [Saccharomyces cerevisiae S288C]

Protein Classification

CGR1 family protein( domain architecture ID 11145969)

CGR1 family protein similar to rRNA-processing proteins, CgrA and CGR1, which are involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 12-119 2.15e-21

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


:

Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 81.52  E-value: 2.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321409     12 AKGTPVSGKVWKAEKTPLRAKSRVVkNKKLTSWELKKQKRLEDKQFKERLKALKDEKEEARQAKITMLKERREKKEENER 91
Cdd:pfam03879   1 PKGMRVSGKPWKAEKKAFRRSSLVV-GPKSKSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKER 79

                          90       100
                  ....*....|....*....|....*...
gi 6321409     92 YERLAAKMHAKKVERMRRREKRNKALKE 119
Cdd:pfam03879  80 YEELAAKMHAKKVERLKRKEKRNKLLKE 107
 
Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 12-119 2.15e-21

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 81.52  E-value: 2.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321409     12 AKGTPVSGKVWKAEKTPLRAKSRVVkNKKLTSWELKKQKRLEDKQFKERLKALKDEKEEARQAKITMLKERREKKEENER 91
Cdd:pfam03879   1 PKGMRVSGKPWKAEKKAFRRSSLVV-GPKSKSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKER 79

                          90       100
                  ....*....|....*....|....*...
gi 6321409     92 YERLAAKMHAKKVERMRRREKRNKALKE 119
Cdd:pfam03879  80 YEELAAKMHAKKVERLKRKEKRNKLLKE 107
PRK11819 PRK11819
putative ABC transporter ATP-binding protein; Reviewed
 42-105 6.14e-04

putative ABC transporter ATP-binding protein; Reviewed


Pssm-ID: 236992 [Multi-domain]  Cd Length: 556  Bit Score: 37.79  E-value: 6.14e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6321409    42 TSWELKKQKRL--EDKQFKERLKALKDEKE------EARQAKitmlkerreKKEENERYERLAAKMHAKKVE 105
Cdd:PRK11819 246 SSWLEQKAKRLaqEEKQEAARQKALKRELEwvrqspKARQAK---------SKARLARYEELLSEEYQKRNE 308
ABC_ABC_ChvD TIGR03719
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ...
 42-107 1.94e-03

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.


Pssm-ID: 274744 [Multi-domain]  Cd Length: 552  Bit Score: 36.45  E-value: 1.94e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6321409     42 TSWELKKQKRL--EDKQFKERLKALKDEKE------EARQAKitmlkerreKKEENERYERLAAKMHAKKVERM 107
Cdd:TIGR03719 244 SSWLEQKQKRLeqEEKEESARQKTLKRELEwvrqspKGRQAK---------SKARLARYEELLSQEFQKRNETA 308
 
Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 12-119 2.15e-21

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 81.52  E-value: 2.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321409     12 AKGTPVSGKVWKAEKTPLRAKSRVVkNKKLTSWELKKQKRLEDKQFKERLKALKDEKEEARQAKITMLKERREKKEENER 91
Cdd:pfam03879   1 PKGMRVSGKPWKAEKKAFRRSSLVV-GPKSKSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKER 79

                          90       100
                  ....*....|....*....|....*...
gi 6321409     92 YERLAAKMHAKKVERMRRREKRNKALKE 119
Cdd:pfam03879  80 YEELAAKMHAKKVERLKRKEKRNKLLKE 107
PRK11819 PRK11819
putative ABC transporter ATP-binding protein; Reviewed
 42-105 6.14e-04

putative ABC transporter ATP-binding protein; Reviewed


Pssm-ID: 236992 [Multi-domain]  Cd Length: 556  Bit Score: 37.79  E-value: 6.14e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6321409    42 TSWELKKQKRL--EDKQFKERLKALKDEKE------EARQAKitmlkerreKKEENERYERLAAKMHAKKVE 105
Cdd:PRK11819 246 SSWLEQKAKRLaqEEKQEAARQKALKRELEwvrqspKARQAK---------SKARLARYEELLSEEYQKRNE 308
ABC_ABC_ChvD TIGR03719
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ...
 42-107 1.94e-03

ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.


Pssm-ID: 274744 [Multi-domain]  Cd Length: 552  Bit Score: 36.45  E-value: 1.94e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6321409     42 TSWELKKQKRL--EDKQFKERLKALKDEKE------EARQAKitmlkerreKKEENERYERLAAKMHAKKVERM 107
Cdd:TIGR03719 244 SSWLEQKQKRLeqEEKEESARQKTLKRELEwvrqspKGRQAK---------SKARLARYEELLSQEFQKRNETA 308
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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