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Conserved domains on  [gi|17158413|ref|NP_477833|]
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wsv311 [Shrimp white spot syndrome virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WSS_VP super family cl13591
White spot syndrome virus structural envelope protein VP; This family of proteins is found in ...
 1-203 1.85e-65

White spot syndrome virus structural envelope protein VP; This family of proteins is found in viruses. Proteins in this family are approximately 210 amino acids in length. There is a conserved NNT sequence motif. These proteins are structural envelope proteins in viruses. This is the beta barrel C terminal domain. There is a protruding N terminal domain which completes the proteins. Three of four envelope proteins in white spot syndrome virus share sequence homology with each other and are present in this family - VP24, VP26 and VP28. VP19 is the other major envelope protein but shares no sequence homology with the other proteins. These proteins are essential for entry into cells of the crustacean host.


The actual alignment was detected with superfamily member pfam12175:

Pssm-ID: 403413  Cd Length: 201  Bit Score: 200.18  E-value: 1.85e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17158413     1 MEFGNLTNLDVAIIAILSIAiialiVIMVIMIVFNTRVGRSVVANYDQMMRVPIQRRAKVMSIRG--------ERSYNT- 71
Cdd:pfam12175   1 MHMGNLWGVYAAILAILALI-----LVVISIVVTNIEVNKKLVANKDDKDRYPVESEIINLTINGrgnhfnfvNGSLQTr 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17158413    72 PLGKVAMKNGLSDKDMKDVSADLVISTVTAPRTDPAGTGAENS-NMTLKILNNTGVDLLINDITVRPTViagnikgNTMS 150
Cdd:pfam12175  76 NLGKVYVANGTSDSEMKKKKADLVITSVDGDRTLNVNKGESKElELTAKVYNNTKRDITIDSVSLSPGL-------NATS 148

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 17158413   151 NTYFSSKDIKSSSSKITLIDVCSKFEDGAAFEATMNIGFTSKNVIDIKDEIKK 203
Cdd:pfam12175 149 REFSASKFVLSFKPTVLKKDRINTFVFGATFDADISMRFSPGNLFDVGDEIEK 201
 
Name Accession Description Interval E-value
WSS_VP pfam12175
White spot syndrome virus structural envelope protein VP; This family of proteins is found in ...
 1-203 1.85e-65

White spot syndrome virus structural envelope protein VP; This family of proteins is found in viruses. Proteins in this family are approximately 210 amino acids in length. There is a conserved NNT sequence motif. These proteins are structural envelope proteins in viruses. This is the beta barrel C terminal domain. There is a protruding N terminal domain which completes the proteins. Three of four envelope proteins in white spot syndrome virus share sequence homology with each other and are present in this family - VP24, VP26 and VP28. VP19 is the other major envelope protein but shares no sequence homology with the other proteins. These proteins are essential for entry into cells of the crustacean host.


Pssm-ID: 403413  Cd Length: 201  Bit Score: 200.18  E-value: 1.85e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17158413     1 MEFGNLTNLDVAIIAILSIAiialiVIMVIMIVFNTRVGRSVVANYDQMMRVPIQRRAKVMSIRG--------ERSYNT- 71
Cdd:pfam12175   1 MHMGNLWGVYAAILAILALI-----LVVISIVVTNIEVNKKLVANKDDKDRYPVESEIINLTINGrgnhfnfvNGSLQTr 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17158413    72 PLGKVAMKNGLSDKDMKDVSADLVISTVTAPRTDPAGTGAENS-NMTLKILNNTGVDLLINDITVRPTViagnikgNTMS 150
Cdd:pfam12175  76 NLGKVYVANGTSDSEMKKKKADLVITSVDGDRTLNVNKGESKElELTAKVYNNTKRDITIDSVSLSPGL-------NATS 148

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 17158413   151 NTYFSSKDIKSSSSKITLIDVCSKFEDGAAFEATMNIGFTSKNVIDIKDEIKK 203
Cdd:pfam12175 149 REFSASKFVLSFKPTVLKKDRINTFVFGATFDADISMRFSPGNLFDVGDEIEK 201
 
Name Accession Description Interval E-value
WSS_VP pfam12175
White spot syndrome virus structural envelope protein VP; This family of proteins is found in ...
 1-203 1.85e-65

White spot syndrome virus structural envelope protein VP; This family of proteins is found in viruses. Proteins in this family are approximately 210 amino acids in length. There is a conserved NNT sequence motif. These proteins are structural envelope proteins in viruses. This is the beta barrel C terminal domain. There is a protruding N terminal domain which completes the proteins. Three of four envelope proteins in white spot syndrome virus share sequence homology with each other and are present in this family - VP24, VP26 and VP28. VP19 is the other major envelope protein but shares no sequence homology with the other proteins. These proteins are essential for entry into cells of the crustacean host.


Pssm-ID: 403413  Cd Length: 201  Bit Score: 200.18  E-value: 1.85e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17158413     1 MEFGNLTNLDVAIIAILSIAiialiVIMVIMIVFNTRVGRSVVANYDQMMRVPIQRRAKVMSIRG--------ERSYNT- 71
Cdd:pfam12175   1 MHMGNLWGVYAAILAILALI-----LVVISIVVTNIEVNKKLVANKDDKDRYPVESEIINLTINGrgnhfnfvNGSLQTr 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17158413    72 PLGKVAMKNGLSDKDMKDVSADLVISTVTAPRTDPAGTGAENS-NMTLKILNNTGVDLLINDITVRPTViagnikgNTMS 150
Cdd:pfam12175  76 NLGKVYVANGTSDSEMKKKKADLVITSVDGDRTLNVNKGESKElELTAKVYNNTKRDITIDSVSLSPGL-------NATS 148

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 17158413   151 NTYFSSKDIKSSSSKITLIDVCSKFEDGAAFEATMNIGFTSKNVIDIKDEIKK 203
Cdd:pfam12175 149 REFSASKFVLSFKPTVLKKDRINTFVFGATFDADISMRFSPGNLFDVGDEIEK 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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