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Conserved domains on  [gi|19074352|ref|NP_585858|]
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Myb-like transcription factor [Encephalitozoon cuniculi GB-M1]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 1001130)

SANT/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
REB1 super family cl34920
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 1-259 7.04e-74

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


The actual alignment was detected with superfamily member COG5147:

Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 233.91  E-value: 7.04e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352   1 MEEKGSLSK--RLERLYMDYIEIEKILKKLRDIKKQCSYR-STIAKLKPRGNGPMVVEADVRQDEEFSKA----TKRCMK 73
Cdd:COG5147  54 TGKQSSNRWnnHLNPQLKKKNWSEEEDEQLIDLDKELGTQwSTIADYKDRRTAQQCVERYVNTLEDLSSThdskLQRRNE 133

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352  74 FDLYDPFWEEVSKRFNISRNECFNRWINNVEDLDRRLSRSDMAWVKQMS--EEGKDWIEMSKEMKCRPFKVFTEHLRLNT 151
Cdd:COG5147 134 FDKIDPFNENSARRPDIYEDELLEREVNREASYRLRVPRVSKADVKPREkgEENNPDIEDLQEMKELKSASITRHLILPS 213

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352 152 MS-----APKMWTLEEDKLLEQGVEKYGLSRWRYVSKIVGTRTGKECAMRFYFLNKNVQKGKWTEDERERLMEGVRIYGE 226
Cdd:COG5147 214 KSeinkaFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTDRDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGK 293

                       250       260       270
                ....*....|....*....|....*....|...
gi 19074352 227 GDWRNVSTHVMTRNPIQCRSKYIGEAKTKKENK 259
Cdd:COG5147 294 WTKEEEQELAKLVVEHGGSWTEIGKLLGRMPND 326
 
Name Accession Description Interval E-value
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 1-259 7.04e-74

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 233.91  E-value: 7.04e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352   1 MEEKGSLSK--RLERLYMDYIEIEKILKKLRDIKKQCSYR-STIAKLKPRGNGPMVVEADVRQDEEFSKA----TKRCMK 73
Cdd:COG5147  54 TGKQSSNRWnnHLNPQLKKKNWSEEEDEQLIDLDKELGTQwSTIADYKDRRTAQQCVERYVNTLEDLSSThdskLQRRNE 133

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352  74 FDLYDPFWEEVSKRFNISRNECFNRWINNVEDLDRRLSRSDMAWVKQMS--EEGKDWIEMSKEMKCRPFKVFTEHLRLNT 151
Cdd:COG5147 134 FDKIDPFNENSARRPDIYEDELLEREVNREASYRLRVPRVSKADVKPREkgEENNPDIEDLQEMKELKSASITRHLILPS 213

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352 152 MS-----APKMWTLEEDKLLEQGVEKYGLSRWRYVSKIVGTRTGKECAMRFYFLNKNVQKGKWTEDERERLMEGVRIYGE 226
Cdd:COG5147 214 KSeinkaFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTDRDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGK 293

                       250       260       270
                ....*....|....*....|....*....|...
gi 19074352 227 GDWRNVSTHVMTRNPIQCRSKYIGEAKTKKENK 259
Cdd:COG5147 294 WTKEEEQELAKLVVEHGGSWTEIGKLLGRMPND 326
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 158-217 5.57e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 51.16  E-value: 5.57e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19074352   158 WTLEEDKLLEQGVEKYGlSRWRYVSKIVGTRTGKECAMRF-YFLNKNVQKGKWTEDERERL 217
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWrRKLNPKISRGPWSKEEDQRL 60
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 158-198 1.34e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 49.88  E-value: 1.34e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 19074352 158 WTLEEDKLLEQGVEKYGLSRWRYVSKIVGTRTGKECAMRFY 198
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
158-202 5.19e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 48.37  E-value: 5.19e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 19074352    158 WTLEEDKLLEQGVEKYGLSRWRYVSKIVGTRTGKECAMRFYFLNK 202
Cdd:smart00717   4 WTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLK 48
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 158-225 5.93e-07

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 49.31  E-value: 5.93e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352  158 WTLEEDKLLEQGVEKYGLSRWRYVSKIVG-TRTGKECAMRFY-FLNKNVQKGKWTEDERERLMEGVRIYG 225
Cdd:PLN03212  28 WTVEEDEILVSFIKKEGEGRWRSLPKRAGlLRCGKSCRLRWMnYLRPSVKRGGITSDEEDLILRLHRLLG 97
 
Name Accession Description Interval E-value
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 1-259 7.04e-74

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 233.91  E-value: 7.04e-74
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352   1 MEEKGSLSK--RLERLYMDYIEIEKILKKLRDIKKQCSYR-STIAKLKPRGNGPMVVEADVRQDEEFSKA----TKRCMK 73
Cdd:COG5147  54 TGKQSSNRWnnHLNPQLKKKNWSEEEDEQLIDLDKELGTQwSTIADYKDRRTAQQCVERYVNTLEDLSSThdskLQRRNE 133

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352  74 FDLYDPFWEEVSKRFNISRNECFNRWINNVEDLDRRLSRSDMAWVKQMS--EEGKDWIEMSKEMKCRPFKVFTEHLRLNT 151
Cdd:COG5147 134 FDKIDPFNENSARRPDIYEDELLEREVNREASYRLRVPRVSKADVKPREkgEENNPDIEDLQEMKELKSASITRHLILPS 213

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352 152 MS-----APKMWTLEEDKLLEQGVEKYGLSRWRYVSKIVGTRTGKECAMRFYFLNKNVQKGKWTEDERERLMEGVRIYGE 226
Cdd:COG5147 214 KSeinkaFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTDRDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGK 293

                       250       260       270
                ....*....|....*....|....*....|...
gi 19074352 227 GDWRNVSTHVMTRNPIQCRSKYIGEAKTKKENK 259
Cdd:COG5147 294 WTKEEEQELAKLVVEHGGSWTEIGKLLGRMPND 326
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 158-217 5.57e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 51.16  E-value: 5.57e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 19074352   158 WTLEEDKLLEQGVEKYGlSRWRYVSKIVGTRTGKECAMRF-YFLNKNVQKGKWTEDERERL 217
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWrRKLNPKISRGPWSKEEDQRL 60
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 158-198 1.34e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 49.88  E-value: 1.34e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 19074352 158 WTLEEDKLLEQGVEKYGLSRWRYVSKIVGTRTGKECAMRFY 198
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
158-202 5.19e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 48.37  E-value: 5.19e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 19074352    158 WTLEEDKLLEQGVEKYGLSRWRYVSKIVGTRTGKECAMRFYFLNK 202
Cdd:smart00717   4 WTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLK 48
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 158-198 1.30e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 47.11  E-value: 1.30e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 19074352   158 WTLEEDKLLEQGVEKYGlSRWRYVSKIVGTRTGKECAMRFY 198
Cdd:pfam00249   4 WTPEEDELLLEAVEKLG-NRWKKIAKLLPGRTDNQCKNRWQ 43
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
206-248 1.52e-07

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 46.83  E-value: 1.52e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 19074352    206 KGKWTEDERERLMEGVRIYGEGDWRNVSTHVMTRNPIQCRSKY 248
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERW 43
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 208-248 1.73e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 46.80  E-value: 1.73e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 19074352 208 KWTEDERERLMEGVRIYGEGDWRNVSTHVMTRNPIQCRSKY 248
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERW 41
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 158-225 5.93e-07

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 49.31  E-value: 5.93e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19074352  158 WTLEEDKLLEQGVEKYGLSRWRYVSKIVG-TRTGKECAMRFY-FLNKNVQKGKWTEDERERLMEGVRIYG 225
Cdd:PLN03212  28 WTVEEDEILVSFIKKEGEGRWRSLPKRAGlLRCGKSCRLRWMnYLRPSVKRGGITSDEEDLILRLHRLLG 97
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 206-248 9.49e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 44.42  E-value: 9.49e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 19074352   206 KGKWTEDERERLMEGVRIYGeGDWRNVSTHVMTRNPIQCRSKY 248
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPGRTDNQCKNRW 42
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 158-219 5.15e-05

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 44.01  E-value: 5.15e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 19074352 158 WTLEEDKLLEQGVEKYGLSRWRYVSKIVGTRTGKECAMRFYF-LNKNVQKGKWTEDERERLME 219
Cdd:COG5147  23 WKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNhLNPQLKKKNWSEEEDEQLID 85
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 156-202 9.53e-05

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 39.09  E-value: 9.53e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 19074352 156 KMWTLEEDKLLEQGVEKYGLSRWRYVSKI---VGTRTGKECAMRFYFLNK 202
Cdd:cd11660   1 RKWTDEEDEALVEGVEKYGVGNWAKILKDyffVNNRTSVDLKDKWRNLKK 50
PLN03091 PLN03091
hypothetical protein; Provisional
 157-219 2.47e-04

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 41.89  E-value: 2.47e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19074352  157 MWTLEEDKLLEQGVEKYGLSRWRYVSKIVG-TRTGKECAMRFY-FLNKNVQKGKWTEDERERLME 219
Cdd:PLN03091  16 LWSPEEDEKLLRHITKYGHGCWSSVPKQAGlQRCGKSCRLRWInYLRPDLKRGTFSQQEENLIIE 80
COG5114 COG5114
Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];
129-198 3.45e-04

Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];


Pssm-ID: 227445 [Multi-domain]  Cd Length: 432  Bit Score: 41.59  E-value: 3.45e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 19074352 129 IEMSKEMKCRPFKVftehlrLNTMSAP---KMWTLEEDKLLEQGVEKYGLSRWRYVSKIVGTRTGKECAMRFY 198
Cdd:COG5114  40 IETGVHSPYHGYRI------IETNSYPigeEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYL 106
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
 156-197 4.62e-04

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 41.02  E-value: 4.62e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 19074352 156 KMWTLEEDKLLEQGVEKYGlSRWRYVSKIVGTRTGKECAMRF 197
Cdd:COG5259 280 KNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHF 320
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
 201-244 5.36e-03

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 37.94  E-value: 5.36e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 19074352 201 NKNVQKGKWTEDERERLMEGVRIYGEgDWRNVSTHVMTRNPIQC 244
Cdd:COG5259 274 SLLIRDKNWSRQELLLLLEGIEMYGD-DWDKVARHVGTKTKEQC 316
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 208-248 6.57e-03

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 34.08  E-value: 6.57e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 19074352 208 KWTEDERERLMEGVRIYGEGDWRNV---STHVMTRNPIQCRSKY 248
Cdd:cd11660   2 KWTDEEDEALVEGVEKYGVGNWAKIlkdYFFVNNRTSVDLKDKW 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 209-251 8.84e-03

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 33.82  E-value: 8.84e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 19074352   209 WTEDERERLMEGVRIYGeGDWRNVSTHVMTRNPIQCRSKYIGE 251
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRK 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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