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Conserved domains on  [gi|20178594|ref|NP_620032|]
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third triple gene block protein [Peanut clump virus]

Protein Classification

Viral_Beta_CD domain-containing protein( domain architecture ID 10517599)

Viral_Beta_CD domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Viral_Beta_CD pfam04530
Viral Beta C/D like family; Family of ssRNA positive-strand viral proteins. Conserved region ...
 6-121 3.95e-61

Viral Beta C/D like family; Family of ssRNA positive-strand viral proteins. Conserved region found in the Beta C and Beta D transcripts.


:

Pssm-ID: 282398  Cd Length: 123  Bit Score: 184.47  E-value: 3.95e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20178594     6 ITHSSGCVCSDCQwSGSPTVDTKVYLGSGTHANTTKTRETSFLSVLNDN---------AWLFVIAALILCLYFIISKPHV 76
Cdd:pfam04530   1 ILHSPNCSCQFCS-SELPSTHTKVYLGSGTQARTTPVEATAAGHVLADNfslqyvllvAFLFVIAGFSLCVYLKSMSNDE 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 20178594    77 DAVYTEFHQDLNGFSMKLAPGvPIDPKVIAAVKNWQKYPFGTDPR 121
Cdd:pfam04530  80 ASDMTYFYQDLNSVEIKLGKG-PLDPEVIAAIHSWQKYPFGNIPS 123
 
Name Accession Description Interval E-value
Viral_Beta_CD pfam04530
Viral Beta C/D like family; Family of ssRNA positive-strand viral proteins. Conserved region ...
 6-121 3.95e-61

Viral Beta C/D like family; Family of ssRNA positive-strand viral proteins. Conserved region found in the Beta C and Beta D transcripts.


Pssm-ID: 282398  Cd Length: 123  Bit Score: 184.47  E-value: 3.95e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20178594     6 ITHSSGCVCSDCQwSGSPTVDTKVYLGSGTHANTTKTRETSFLSVLNDN---------AWLFVIAALILCLYFIISKPHV 76
Cdd:pfam04530   1 ILHSPNCSCQFCS-SELPSTHTKVYLGSGTQARTTPVEATAAGHVLADNfslqyvllvAFLFVIAGFSLCVYLKSMSNDE 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 20178594    77 DAVYTEFHQDLNGFSMKLAPGvPIDPKVIAAVKNWQKYPFGTDPR 121
Cdd:pfam04530  80 ASDMTYFYQDLNSVEIKLGKG-PLDPEVIAAIHSWQKYPFGNIPS 123
 
Name Accession Description Interval E-value
Viral_Beta_CD pfam04530
Viral Beta C/D like family; Family of ssRNA positive-strand viral proteins. Conserved region ...
 6-121 3.95e-61

Viral Beta C/D like family; Family of ssRNA positive-strand viral proteins. Conserved region found in the Beta C and Beta D transcripts.


Pssm-ID: 282398  Cd Length: 123  Bit Score: 184.47  E-value: 3.95e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20178594     6 ITHSSGCVCSDCQwSGSPTVDTKVYLGSGTHANTTKTRETSFLSVLNDN---------AWLFVIAALILCLYFIISKPHV 76
Cdd:pfam04530   1 ILHSPNCSCQFCS-SELPSTHTKVYLGSGTQARTTPVEATAAGHVLADNfslqyvllvAFLFVIAGFSLCVYLKSMSNDE 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 20178594    77 DAVYTEFHQDLNGFSMKLAPGvPIDPKVIAAVKNWQKYPFGTDPR 121
Cdd:pfam04530  80 ASDMTYFYQDLNSVEIKLGKG-PLDPEVIAAIHSWQKYPFGNIPS 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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