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Conserved domains on  [gi|25057943|ref|NP_740153|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Arcos sp. KU 149]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009580)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177192  Cd Length: 324  Bit Score: 595.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    1 MMSTIFSFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAA 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   81 PMLALTLAMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  161 VFTGGFTLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  241 NTLSAILFLGTTLYLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAFAGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320


                 ....
gi 25057943  321 PPQF 324
Cdd:MTH00134 321 PPQL 324
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 595.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    1 MMSTIFSFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAA 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   81 PMLALTLAMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  161 VFTGGFTLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  241 NTLSAILFLGTTLYLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAFAGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320


                 ....
gi 25057943  321 PPQF 324
Cdd:MTH00134 321 PPQL 324
NADHdh pfam00146
NADH dehydrogenase;
13-309 2.17e-115

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 335.60  E-value: 2.17e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    13 LILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALTLAMMLW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    93 TPIPLPQ--PITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGGFTLST 170
Cdd:pfam00146  83 AVIPFGPglVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   171 FSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 25057943   251 TTLYLnVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:pfam00146 243 GWLGP-FPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-309 7.24e-108

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 317.46  E-value: 7.24e-108
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   4 TIFSFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPML 83
Cdd:COG1005   7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  84 ALTLAMMLWTPIPLPQP--ITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIV 161
Cdd:COG1005  87 AFIPALLAFAVIPFGPGlvLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943 162 FTGGFTLSTFSTAQEA-IWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:COG1005 167 LAGSLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 25057943 241 NTLSAILFLG-----TTLYLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:COG1005 247 SALATTLFLGgwlgpFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-324 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 595.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    1 MMSTIFSFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAA 80
Cdd:MTH00134   1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   81 PMLALTLAMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTI 160
Cdd:MTH00134  81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  161 VFTGGFTLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:MTH00134 161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  241 NTLSAILFLGTTLYLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAFAGL 320
Cdd:MTH00134 241 NTLSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGL 320


                 ....
gi 25057943  321 PPQF 324
Cdd:MTH00134 321 PPQL 324
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 2-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 542.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    2 MSTIFSFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAP 81
Cdd:MTH00071   1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   82 MLALTLAMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIV 161
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  162 FTGGFTLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241
Cdd:MTH00071 161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  242 TLSAILFLGTTLYLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAFAGLP 321
Cdd:MTH00071 241 TLSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIP 320


                 ..
gi 25057943  322 PQ 323
Cdd:MTH00071 321 PM 322
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 2-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 528.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    2 MSTIFSFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAP 81
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   82 MLALTLAMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIV 161
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  162 FTGGFTLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  242 TLSAILFLGTTLYLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAFAGLP 321
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ..
gi 25057943  322 PQ 323
Cdd:MTH00111 321 PQ 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 8-323 1.91e-172

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 480.66  E-value: 1.91e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    8 FIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALTL 87
Cdd:MTH00104   2 FMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   88 AMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGGFT 167
Cdd:MTH00104  82 ALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFT 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  168 LSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAIL 247
Cdd:MTH00104 162 LSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTIL 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 25057943  248 FLGTTLYLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAFAGLPPQ 323
Cdd:MTH00104 242 FLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQ 317
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 2-324 1.37e-151

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 428.24  E-value: 1.37e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    2 MSTIFsFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAP 81
Cdd:MTH00040   1 MSVIL-FLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSP 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   82 MLALTLAMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIV 161
Cdd:MTH00040  80 VLFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVI 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  162 FTGGFTLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241
Cdd:MTH00040 160 FSGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMN 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  242 TLSAILFLGTTLYLN-VPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAFAGL 320
Cdd:MTH00040 240 LLSVILFLGGGSPFNeIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNIL 319


                 ....
gi 25057943  321 PPQF 324
Cdd:MTH00040 320 PPNY 323
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 9-322 1.45e-151

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 427.79  E-value: 1.45e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    9 IINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALTLA 88
Cdd:MTH00218   5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   89 MMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGGFTL 168
Cdd:MTH00218  85 LLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  169 STFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILF 248
Cdd:MTH00218 165 EGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILF 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 25057943  249 LGTtlylnvpSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAFAGLPP 322
Cdd:MTH00218 245 LGT-------SLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 9-319 2.69e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 340.57  E-value: 2.69e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    9 IINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALTLA 88
Cdd:MTH00195   5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   89 MMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGGFTL 168
Cdd:MTH00195  85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  169 STFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILF 248
Cdd:MTH00195 165 TIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 25057943  249 LGttlylnvpSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAFAG 319
Cdd:MTH00195 245 LG--------GGGTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
13-309 2.17e-115

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 335.60  E-value: 2.17e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    13 LILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALTLAMMLW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    93 TPIPLPQ--PITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGGFTLST 170
Cdd:pfam00146  83 AVIPFGPglVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   171 FSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 25057943   251 TTLYLnVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:pfam00146 243 GWLGP-FPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 30-306 2.03e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 330.68  E-value: 2.03e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   30 ERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALTLAMMLWTPIPLPQPITDLNLAIL 109
Cdd:MTH00143  25 ERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSSSYFGWGLL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  110 FLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGGFTLSTFSTAQEAIWLLFPAWPLAA 189
Cdd:MTH00143 105 FFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLGFLMFPVFL 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  190 MWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGTTLYLNVpsLTAAIIMIKA 269
Cdd:MTH00143 185 MWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSVLFL--LGGVVFMFKV 262

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 25057943  270 ALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLAL 306
Cdd:MTH00143 263 LFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 5-317 1.33e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 325.96  E-value: 1.33e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    5 IFSFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLA 84
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   85 LTLAMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTG 164
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  165 GFTLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLS 244
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 25057943  245 AILFLGTTLYLNvpsltaaIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAF 317
Cdd:MTH00193 241 VLMFLGGDLLSL-------LFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 9-322 5.51e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 322.83  E-value: 5.51e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    9 IINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALTLA 88
Cdd:MTH00054   5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   89 MMLWTPIPLPQPI--TDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGGF 166
Cdd:MTH00054  85 FIAWGVIPYGEGVvlSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  167 TLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAI 246
Cdd:MTH00054 165 NLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 25057943  247 LFLGTTLYLNVPSLTAAIIM---IKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVAFAGLPP 322
Cdd:MTH00054 245 LFLGGWLVISGPTSYFSNFVwfgIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 7-313 1.45e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 320.83  E-value: 1.45e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    7 SFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALT 86
Cdd:MTH00225   2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   87 LAMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGGF 166
Cdd:MTH00225  82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  167 TLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAI 246
Cdd:MTH00225 162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 25057943  247 LFLGTTLYlnvpsLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSI 313
Cdd:MTH00225 242 LFFGGFFV-----TIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-322 1.82e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 321.30  E-value: 1.82e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    1 MMSTIFSFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAA 80
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   81 PMLALTLAMMLWTPIPLPQP--ITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLN 158
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYERGvlISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  159 TIVFTGGFTLSTFSTAQEA-IWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANI 237
Cdd:MTH00216 161 VLLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  238 LLMNTLSAILFLGTTL-YLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIWHLSIPVA 316
Cdd:MTH00216 241 ILMSCLTTILFLGGWLsPIKYFKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFG 320


                 ....*.
gi 25057943  317 FAGLPP 322
Cdd:MTH00216 321 FNGPPP 326
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 4-309 7.24e-108

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 317.46  E-value: 7.24e-108
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   4 TIFSFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPML 83
Cdd:COG1005   7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  84 ALTLAMMLWTPIPLPQP--ITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIV 161
Cdd:COG1005  87 AFIPALLAFAVIPFGPGlvLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943 162 FTGGFTLSTFSTAQEA-IWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
Cdd:COG1005 167 LAGSLNLSEIVEAQAGgLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 25057943 241 NTLSAILFLG-----TTLYLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:COG1005 247 SALATTLFLGgwlgpFPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-309 2.42e-104

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 308.27  E-value: 2.42e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    1 MMSTIFSFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAA 80
Cdd:PRK06076   5 GPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   81 PMLALTLAMMLWTPIPLPQ--PITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLN 158
Cdd:PRK06076  85 PVIAFIPAFLAWAVIPFGPelVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLA 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  159 TIVFTGGFTLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238
Cdd:PRK06076 165 VVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMI 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 25057943  239 LMNTLSAILFLG---TTLYLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:PRK06076 245 LVSALITTLFLGgwlPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 7-317 2.69e-92

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 277.05  E-value: 2.69e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    7 SFIINPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALT 86
Cdd:MTH00010   4 SFFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   87 LAMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGGF 166
Cdd:MTH00010  84 LALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTF 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  167 TLSTFSTAQEAiWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAI 246
Cdd:MTH00010 164 SFSKIIMSQYS-WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSV 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 25057943  247 LFLGTTLYLnvpSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIwhLSIPVAF 317
Cdd:MTH00010 243 FFTSFIPSI---FISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMF 308
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 4-324 1.01e-91

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 276.90  E-value: 1.01e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    4 TIFSFI---INPLILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAA 80
Cdd:MTH00029   2 TIYSYItvtIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   81 PMLALTLAMMLWTPIPLPQPI--TDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLN 158
Cdd:MTH00029  82 PIISFTLAILAWAIVTMDQGVflSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIIS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  159 TIVFTGGFTLSTFSTAQEAIWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIL 238
Cdd:MTH00029 162 VILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNII 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  239 LMNTLSAILFLGTTL----------------YLNVPSLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPL 302
Cdd:MTH00029 242 LMSCMMTIFFLGGWLspldgiptppeafsifEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPL 321

                        330       340
                 ....*....|....*....|..
gi 25057943  303 TLALVIWHLSIPVAFAGLPPQF 324
Cdd:MTH00029 322 SLGLVILTAGILIGFNGVPPPF 343
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 13-304 2.35e-60

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 194.35  E-value: 2.35e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   13 LILIVFVLLAVALLTLLERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALTLAMMLW 92
Cdd:MTH00090   3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   93 TPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGGFTL-STF 171
Cdd:MTH00090  83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFvSSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  172 STAQEAIWLLFpawplaamwYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGt 251
Cdd:MTH00090 163 SLSLFVIYLPF---------LIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK- 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 25057943  252 tlylnvpsltaaIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTL 304
Cdd:MTH00090 233 ------------FSFLMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 3-304 2.98e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 165.87  E-value: 2.98e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943    3 STIFSFIINpLILIVFVLLAvalltllERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPM 82
Cdd:MTH00058   6 SGLEGLLII-LLLVAFFILG-------ERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVF 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   83 LALTLAMMLWTPIPLPQPITDLNLAILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVF 162
Cdd:MTH00058  78 LLVLLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLC 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  163 TGGFTLSTFSTAQEAIWLLFPawPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNT 242
Cdd:MTH00058 158 YGSYSLVDFYYSGWLSVLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSW 235

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 25057943  243 LSAILFLGTTLYlnvpsltaaIIMIKAALLsvLFLWVRASYPRFRYDQLMHLIWKNFLPLTL 304
Cdd:MTH00058 236 LGSVLFFGGGFV---------SIMLLFHLL--FFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 30-304 2.34e-46

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 160.50  E-value: 2.34e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   30 ERKTLGYMQLRKGPNIVGPYGLLQPIADGLKLFMKEPVRPSTSSPLLFLAAPMLALTLAMMLWTPIPLPQPI--TDLNLA 107
Cdd:CHL00032  51 EREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLvlADLSIG 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  108 ILFLLAISSLAVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLNTIVFTGgfTLSTFSTAQEAIWLLFPAWPL 187
Cdd:CHL00032 131 VFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSN--SLSTVDIVEAQSKYGFWGWNL 208

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  188 aamW---------YISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLG----TTLY 254
Cdd:CHL00032 209 ---WrqpigfivfLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGgwnlSIPY 285

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 25057943  255 LNVPSL------------TAAIIMIKAALLSVLFLWV--RASYPRFRYDQLMHLIWKNFLPLTL 304
Cdd:CHL00032 286 IFIPELfeinktggvfgtTIGIFITLAKTYLFLFISIttRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
2-309 9.00e-32

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 120.29  E-value: 9.00e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943   2 MSTIFSFIINPLILIVFVLLAVALltllERKTLGYMQLRKGPnivgpyGLLQPIADGLKLFMKEPVRPSTSSPLLFLA-- 79
Cdd:COG0650   1 MMLILLALLQLLLALLLAPLLLGI----IRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLFRAApy 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943  80 ---APMLALTLAMMLWTPIPLPQPITDLnLAILFLLAISSLAvyaILGSGWASNSKYALIGALRAVAQTISYEVSLGLIL 156
Cdd:COG0650  71 valAAMLLAALLVPVLTTGPPLSFSGDL-IVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVL 146

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25057943 157 LNTIVFTGGFTLSTFSTAQEA---IWLLFPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE 233
Cdd:COG0650 147 FALALLAGSTSLSDIVAYQAAhgpLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAA 226

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 25057943 234 YANILLMNTLSAILFLGTTLYLNVPsLTAAIIMIKAALLSVLFLWVRASYPRFRYDQLMHLIWKNFLPLTLALVIW 309
Cdd:COG0650 227 ALKLFVLLSLFVNLFLPWGIALTLL-LALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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