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Conserved domains on  [gi|32128462|ref|NP_858997|]
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HNH endonuclease [Xanthomonas phage Xp10]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HNH_3 pfam13392
HNH endonuclease; This is a zinc-binding loop of Fold group 7 as found in ...
 59-103 2.09e-11

HNH endonuclease; This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.


:

Pssm-ID: 433169  Cd Length: 46  Bit Score: 56.06  E-value: 2.09e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 32128462    59 YRAHRLAWLLHTGSWPSQH-LDHISGQRDDNRFSNLRECNKSENGQ 103
Cdd:pfam13392   1 KYAHRVAWELHNGPIPDGMvVDHIDGDRRNNRPENLRLVTRRENAR 46
PHA00280 super family cl27633
putative NHN endonuclease
 47-139 1.70e-06

putative NHN endonuclease


The actual alignment was detected with superfamily member PHA00280:

Pssm-ID: 106901 [Multi-domain]  Cd Length: 121  Bit Score: 44.77  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32128462   47 QGYLQVRVHGkdyRAHRLAWLLHTGSWPS-QHLDHISGQRDDNRFSNLRECNKSENGQNRGMSSNNTSGVQGVCWHKQTK 125
Cdd:PHA00280   3 KSYKQFYKAP---RRHIQVWEAANGPIPKgYYIDHIDGNPLNDALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKERE 79

                         90
                 ....*....|....
gi 32128462  126 KWRARIMVQGKHIS 139
Cdd:PHA00280  80 MWRGTVTAEGKQHN 93
 
Name Accession Description Interval E-value
HNH_3 pfam13392
HNH endonuclease; This is a zinc-binding loop of Fold group 7 as found in ...
 59-103 2.09e-11

HNH endonuclease; This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.


Pssm-ID: 433169  Cd Length: 46  Bit Score: 56.06  E-value: 2.09e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 32128462    59 YRAHRLAWLLHTGSWPSQH-LDHISGQRDDNRFSNLRECNKSENGQ 103
Cdd:pfam13392   1 KYAHRVAWELHNGPIPDGMvVDHIDGDRRNNRPENLRLVTRRENAR 46
PHA00280 PHA00280
putative NHN endonuclease
 47-139 1.70e-06

putative NHN endonuclease


Pssm-ID: 106901 [Multi-domain]  Cd Length: 121  Bit Score: 44.77  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32128462   47 QGYLQVRVHGkdyRAHRLAWLLHTGSWPS-QHLDHISGQRDDNRFSNLRECNKSENGQNRGMSSNNTSGVQGVCWHKQTK 125
Cdd:PHA00280   3 KSYKQFYKAP---RRHIQVWEAANGPIPKgYYIDHIDGNPLNDALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKERE 79

                         90
                 ....*....|....
gi 32128462  126 KWRARIMVQGKHIS 139
Cdd:PHA00280  80 MWRGTVTAEGKQHN 93
 
Name Accession Description Interval E-value
HNH_3 pfam13392
HNH endonuclease; This is a zinc-binding loop of Fold group 7 as found in ...
 59-103 2.09e-11

HNH endonuclease; This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.


Pssm-ID: 433169  Cd Length: 46  Bit Score: 56.06  E-value: 2.09e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 32128462    59 YRAHRLAWLLHTGSWPSQH-LDHISGQRDDNRFSNLRECNKSENGQ 103
Cdd:pfam13392   1 KYAHRVAWELHNGPIPDGMvVDHIDGDRRNNRPENLRLVTRRENAR 46
PHA00280 PHA00280
putative NHN endonuclease
 47-139 1.70e-06

putative NHN endonuclease


Pssm-ID: 106901 [Multi-domain]  Cd Length: 121  Bit Score: 44.77  E-value: 1.70e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 32128462   47 QGYLQVRVHGkdyRAHRLAWLLHTGSWPS-QHLDHISGQRDDNRFSNLRECNKSENGQNRGMSSNNTSGVQGVCWHKQTK 125
Cdd:PHA00280   3 KSYKQFYKAP---RRHIQVWEAANGPIPKgYYIDHIDGNPLNDALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKERE 79

                         90
                 ....*....|....
gi 32128462  126 KWRARIMVQGKHIS 139
Cdd:PHA00280  80 MWRGTVTAEGKQHN 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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