NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|33620693|ref|NP_891744|]
View 

UvsY [Escherichia phage RB49]

Protein Classification

UvsY domain-containing protein( domain architecture ID 10567396)

UvsY domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
UvsY pfam11056
Recombination, repair and ssDNA binding protein UvsY; UvsY protein enhances the rate of ...
 9-135 8.78e-57

Recombination, repair and ssDNA binding protein UvsY; UvsY protein enhances the rate of single-stranded-DNA-dependant ATP hydrolysis by UvsX protein. The enhancement of ATP hydrolysis by UvsY protein is shown to result from the ability of UvsY protein to increase the affinity of UvsX protein for single-stranded DNA.


:

Pssm-ID: 463212  Cd Length: 128  Bit Score: 172.57  E-value: 8.78e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33620693     9 QLEADMKIDATKLQWEALNNPVVYSKWLRIYSEAKRETIALEAKKKKAMKNRLDFYTNRSDD-WCRAEYEKSELKVVMAA 87
Cdd:pfam11056   1 ELKEDSKIDTTALQTESINNPVLHSKWLRYYSDAKQEKTRLEAQKKKLLKERLDYYTGRADDeVCMEEYEKSEMKTVLAA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 33620693    88 DDEILPLDTKIAYYQMVMDFAGRALDIVKSRGFAIKNAIELRMLESGR 135
Cdd:pfam11056  81 DEEVIKIDAKIQYIDQVLDFLEEALKAISQRGFQIKNAIEWRKFEAGK 128
 
Name Accession Description Interval E-value
UvsY pfam11056
Recombination, repair and ssDNA binding protein UvsY; UvsY protein enhances the rate of ...
 9-135 8.78e-57

Recombination, repair and ssDNA binding protein UvsY; UvsY protein enhances the rate of single-stranded-DNA-dependant ATP hydrolysis by UvsX protein. The enhancement of ATP hydrolysis by UvsY protein is shown to result from the ability of UvsY protein to increase the affinity of UvsX protein for single-stranded DNA.


Pssm-ID: 463212  Cd Length: 128  Bit Score: 172.57  E-value: 8.78e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33620693     9 QLEADMKIDATKLQWEALNNPVVYSKWLRIYSEAKRETIALEAKKKKAMKNRLDFYTNRSDD-WCRAEYEKSELKVVMAA 87
Cdd:pfam11056   1 ELKEDSKIDTTALQTESINNPVLHSKWLRYYSDAKQEKTRLEAQKKKLLKERLDYYTGRADDeVCMEEYEKSEMKTVLAA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 33620693    88 DDEILPLDTKIAYYQMVMDFAGRALDIVKSRGFAIKNAIELRMLESGR 135
Cdd:pfam11056  81 DEEVIKIDAKIQYIDQVLDFLEEALKAISQRGFQIKNAIEWRKFEAGK 128
 
Name Accession Description Interval E-value
UvsY pfam11056
Recombination, repair and ssDNA binding protein UvsY; UvsY protein enhances the rate of ...
 9-135 8.78e-57

Recombination, repair and ssDNA binding protein UvsY; UvsY protein enhances the rate of single-stranded-DNA-dependant ATP hydrolysis by UvsX protein. The enhancement of ATP hydrolysis by UvsY protein is shown to result from the ability of UvsY protein to increase the affinity of UvsX protein for single-stranded DNA.


Pssm-ID: 463212  Cd Length: 128  Bit Score: 172.57  E-value: 8.78e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 33620693     9 QLEADMKIDATKLQWEALNNPVVYSKWLRIYSEAKRETIALEAKKKKAMKNRLDFYTNRSDD-WCRAEYEKSELKVVMAA 87
Cdd:pfam11056   1 ELKEDSKIDTTALQTESINNPVLHSKWLRYYSDAKQEKTRLEAQKKKLLKERLDYYTGRADDeVCMEEYEKSEMKTVLAA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 33620693    88 DDEILPLDTKIAYYQMVMDFAGRALDIVKSRGFAIKNAIELRMLESGR 135
Cdd:pfam11056  81 DEEVIKIDAKIQYIDQVLDFLEEALKAISQRGFQIKNAIEWRKFEAGK 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH