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Conserved domains on  [gi|1050391290|gb|OCT93482|]
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hypothetical protein XELAEV_18016552mg [Xenopus laevis]

Protein Classification

SEL1-like repeat protein( domain architecture ID 11715404)

SEL1-like repeat family protein may function as an adaptor protein for the assembly of macromolecular complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
573-815 1.60e-37

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 141.22  E-value: 1.60e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  573 YDLSYAYYANIAFQSTEDRLQPNRDQSYVETIRLIDEEVLKLQTKEDDDLFMWLRYQAKQGVISAQQSVSRMLYWGQqGI 652
Cdd:COG0790      1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GV 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  653 SSNLQAAAKFYEKGAmQQKDPVMMYDYGVVLLRGQGVKQDIPKALEYLKKAADMNFVPALNSLGWYYERYEG---DYEKA 729
Cdd:COG0790     80 PKDYEKALEWFEKAA-EQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGvpkDPAKA 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  730 IEYWERADELWNAEAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSATRGHIDAAVHVSFFWIKGIPglVPRNPHDAVVWT 809
Cdd:COG0790    159 AEWYRKAAEQGDADAQYNLGVLYENGR--GVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEG--VEKDLEKALRWL 234


                   ....*.
gi 1050391290  810 KWAAEQ 815
Cdd:COG0790    235 RKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
696-974 1.22e-12

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 68.80  E-value: 1.22e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  696 ALEYLKKAADMNFVPALNSLGWYYERYEGDYEKAIEYWERADELWNAEAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSA 775
Cdd:COG0790     17 ALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGR--GVPKDYEKALEWFEKAA 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  776 TRGHIDAAVHVSFFWIKGIPglVPRNPHDAVVWtkwaaeqngylgmqlrkgldaylkhswlesllhYIQAAEAGFEIAQF 855
Cdd:COG0790     95 EQGDAEAQYNLGLMYEEGLG--VPQDYAKALEW---------------------------------YEKAAEQGDADAQY 139

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  856 NAAYIcqhdpdglmshyihtdcmwkYYNlsvssaspssyaqikmGDLLytshmrrKRNVQAAVQMYKAAALLKDPQGLYN 935
Cdd:COG0790    140 NLGLL--------------------YLN----------------GEGV-------PKDPAKAAEWYRKAAEQGDADAQYN 176

                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1050391290  936 LGILVEDGVPVPwstlhelgfnrstgsNNYTIAIELYRR 974
Cdd:COG0790    177 LGVLYENGRGVP---------------KDPAKALEWYRK 200
TPR super family cl34042
TPR repeat [General function prediction only];
504-587 7.07e-04

TPR repeat [General function prediction only];


The actual alignment was detected with superfamily member COG0790:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 42.61  E-value: 7.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  504 ISLLLQAGCLGYHPALYLASVLFQTGFGIKMDPSKALMLKLIAAQKDDRLSLMSLGhKHHMGGDGYPVDYDLSYAYYANI 583
Cdd:COG0790    159 AEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLG-RLYLNGEGVEKDLEKALRWLRKA 237


                   ....
gi 1050391290  584 AFQS 587
Cdd:COG0790    238 AEQA 241
Laminin_G_2 super family cl47732
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G ...
 257-364 7.63e-04

Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.


The actual alignment was detected with superfamily member pfam02210:

Pssm-ID: 460494 [Multi-domain]  Cd Length: 126  Bit Score: 40.48  E-value: 7.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  257 LFYHVGDDSDYssPTVLLnSEGQLHIQVDLMSGKTYAFQSFVSLPLNQWCQIHLILDNSLANLTVicDDDPPSmmSYRFP 336
Cdd:pfam02210   10 LLYAGGGGSDF--LALEL-VNGRLVLRYDLGSGPESLLSSGKNLNDGQWHSVRVERNGNTLTLSV--DGQTVV--SSLPP 82

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1050391290  337 TSVYLDDTTGYFSLTGCQFVSGI------IGFLG 364
Cdd:pfam02210   83 GESLLLNLNGPLYLGGLPPLLLLpalpvrAGFVG 116
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
573-815 1.60e-37

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 141.22  E-value: 1.60e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  573 YDLSYAYYANIAFQSTEDRLQPNRDQSYVETIRLIDEEVLKLQTKEDDDLFMWLRYQAKQGVISAQQSVSRMLYWGQqGI 652
Cdd:COG0790      1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GV 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  653 SSNLQAAAKFYEKGAmQQKDPVMMYDYGVVLLRGQGVKQDIPKALEYLKKAADMNFVPALNSLGWYYERYEG---DYEKA 729
Cdd:COG0790     80 PKDYEKALEWFEKAA-EQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGvpkDPAKA 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  730 IEYWERADELWNAEAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSATRGHIDAAVHVSFFWIKGIPglVPRNPHDAVVWT 809
Cdd:COG0790    159 AEWYRKAAEQGDADAQYNLGVLYENGR--GVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEG--VEKDLEKALRWL 234


                   ....*.
gi 1050391290  810 KWAAEQ 815
Cdd:COG0790    235 RKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
696-974 1.22e-12

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 68.80  E-value: 1.22e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  696 ALEYLKKAADMNFVPALNSLGWYYERYEGDYEKAIEYWERADELWNAEAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSA 775
Cdd:COG0790     17 ALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGR--GVPKDYEKALEWFEKAA 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  776 TRGHIDAAVHVSFFWIKGIPglVPRNPHDAVVWtkwaaeqngylgmqlrkgldaylkhswlesllhYIQAAEAGFEIAQF 855
Cdd:COG0790     95 EQGDAEAQYNLGLMYEEGLG--VPQDYAKALEW---------------------------------YEKAAEQGDADAQY 139

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  856 NAAYIcqhdpdglmshyihtdcmwkYYNlsvssaspssyaqikmGDLLytshmrrKRNVQAAVQMYKAAALLKDPQGLYN 935
Cdd:COG0790    140 NLGLL--------------------YLN----------------GEGV-------PKDPAKAAEWYRKAAEQGDADAQYN 176

                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1050391290  936 LGILVEDGVPVPwstlhelgfnrstgsNNYTIAIELYRR 974
Cdd:COG0790    177 LGVLYENGRGVP---------------KDPAKALEWYRK 200
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 676-707 1.88e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 45.21  E-value: 1.88e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1050391290  676 MYDYGVVLLRGQGVKQDIPKALEYLKKAADMN 707
Cdd:pfam08238    4 QYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 742-779 1.09e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.93  E-value: 1.09e-05
                            10        20        30
                    ....*....|....*....|....*....|....*...
gi 1050391290   742 AEAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSATRGH 779
Cdd:smart00671    1 AEAQYNLGQMYEYGL--GVPKDLEKALEYYKKAAELGN 36
TPR COG0790
TPR repeat [General function prediction only];
504-587 7.07e-04

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 42.61  E-value: 7.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  504 ISLLLQAGCLGYHPALYLASVLFQTGFGIKMDPSKALMLKLIAAQKDDRLSLMSLGhKHHMGGDGYPVDYDLSYAYYANI 583
Cdd:COG0790    159 AEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLG-RLYLNGEGVEKDLEKALRWLRKA 237


                   ....
gi 1050391290  584 AFQS 587
Cdd:COG0790    238 AEQA 241
Laminin_G_2 pfam02210
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G ...
 257-364 7.63e-04

Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.


Pssm-ID: 460494 [Multi-domain]  Cd Length: 126  Bit Score: 40.48  E-value: 7.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  257 LFYHVGDDSDYssPTVLLnSEGQLHIQVDLMSGKTYAFQSFVSLPLNQWCQIHLILDNSLANLTVicDDDPPSmmSYRFP 336
Cdd:pfam02210   10 LLYAGGGGSDF--LALEL-VNGRLVLRYDLGSGPESLLSSGKNLNDGQWHSVRVERNGNTLTLSV--DGQTVV--SSLPP 82

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1050391290  337 TSVYLDDTTGYFSLTGCQFVSGI------IGFLG 364
Cdd:pfam02210   83 GESLLLNLNGPLYLGGLPPLLLLpalpvrAGFVG 116
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
573-815 1.60e-37

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 141.22  E-value: 1.60e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  573 YDLSYAYYANIAFQSTEDRLQPNRDQSYVETIRLIDEEVLKLQTKEDDDLFMWLRYQAKQGVISAQQSVSRMLYWGQqGI 652
Cdd:COG0790      1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGR-GV 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  653 SSNLQAAAKFYEKGAmQQKDPVMMYDYGVVLLRGQGVKQDIPKALEYLKKAADMNFVPALNSLGWYYERYEG---DYEKA 729
Cdd:COG0790     80 PKDYEKALEWFEKAA-EQGDAEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGvpkDPAKA 158

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  730 IEYWERADELWNAEAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSATRGHIDAAVHVSFFWIKGIPglVPRNPHDAVVWT 809
Cdd:COG0790    159 AEWYRKAAEQGDADAQYNLGVLYENGR--GVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEG--VEKDLEKALRWL 234


                   ....*.
gi 1050391290  810 KWAAEQ 815
Cdd:COG0790    235 RKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
506-777 1.31e-24

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 103.85  E-value: 1.31e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  506 LLLQAGCLGYHPALYLASVLFQTGFGIKMDPSKAlmlkliaaqkddrlslmslghkhhmggdgypvdydlsyayyaniaf 585
Cdd:COG0790     53 AAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKA---------------------------------------------- 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  586 qstedrlqpnrdqsyvetirlideevlklqtkedddlFMWLRYQAKQGVISAQQSVSRMLYWGqQGISSNLQAAAKFYEK 665
Cdd:COG0790     87 -------------------------------------LEWFEKAAEQGDAEAQYNLGLMYEEG-LGVPQDYAKALEWYEK 128

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  666 gAMQQKDPVMMYDYGVVLLRGQGVKQDIPKALEYLKKAADMNFVPALNSLGWYYERYEG---DYEKAIEYWERADELWNA 742
Cdd:COG0790    129 -AAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGvpkDPAKALEWYRKAAEQGDA 207

                          250       260       270
                   ....*....|....*....|....*....|....*
gi 1050391290  743 EAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSATR 777
Cdd:COG0790    208 DAQYNLGRLYLNGE--GVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
656-947 2.65e-22

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 96.92  E-value: 2.65e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  656 LQAAAKFYEKGAMQQKDPVMMYDYGVVLLRGQGVKQDIPKALEYLKKAADMNFVPALNSLGWYYERYEG---DYEKAIEY 732
Cdd:COG0790     10 AAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGvpkDYEKALEW 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  733 WERADELWNAEAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSATRGHIDAAVHVSFFWIKGIpgLVPRNPHDAVVWtkwa 812
Cdd:COG0790     90 FEKAAEQGDAEAQYNLGLMYEEGL--GVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGE--GVPKDPAKAAEW---- 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  813 aeqngylgmqlrkgldaylkhswlesllhYIQAAEAGFEIAQFNAAYIcqhdpdglmshyihtdcmwkYYNlsvssasps 892
Cdd:COG0790    162 -----------------------------YRKAAEQGDADAQYNLGVL--------------------YEN--------- 183

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1050391290  893 syaqikmGDLLytshmrrKRNVQAAVQMYKAAALLKDPQGLYNLGILVEDGVPVP 947
Cdd:COG0790    184 -------GRGV-------PKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVE 224
TPR COG0790
TPR repeat [General function prediction only];
696-974 1.22e-12

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 68.80  E-value: 1.22e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  696 ALEYLKKAADMNFVPALNSLGWYYERYEGDYEKAIEYWERADELWNAEAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSA 775
Cdd:COG0790     17 ALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGR--GVPKDYEKALEWFEKAA 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  776 TRGHIDAAVHVSFFWIKGIPglVPRNPHDAVVWtkwaaeqngylgmqlrkgldaylkhswlesllhYIQAAEAGFEIAQF 855
Cdd:COG0790     95 EQGDAEAQYNLGLMYEEGLG--VPQDYAKALEW---------------------------------YEKAAEQGDADAQY 139

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  856 NAAYIcqhdpdglmshyihtdcmwkYYNlsvssaspssyaqikmGDLLytshmrrKRNVQAAVQMYKAAALLKDPQGLYN 935
Cdd:COG0790    140 NLGLL--------------------YLN----------------GEGV-------PKDPAKAAEWYRKAAEQGDADAQYN 176

                          250       260       270
                   ....*....|....*....|....*....|....*....
gi 1050391290  936 LGILVEDGVPVPwstlhelgfnrstgsNNYTIAIELYRR 974
Cdd:COG0790    177 LGVLYENGRGVP---------------KDPAKALEWYRK 200
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 655-745 6.66e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.01  E-value: 6.66e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  655 NLQAAAKFYEKG-AMQQKDPVMMYDYGVVLLRgqgvKQDIPKALEYLKKAADM--NFVPALNSLGWYYERyEGDYEKAIE 731
Cdd:COG4235     32 RYDEALAAYEKAlRLDPDNADALLDLAEALLA----AGDTEEAEELLERALALdpDNPEALYLLGLAAFQ-QGDYAEAIA 106

                           90
                   ....*....|....
gi 1050391290  732 YWERADELWNAEAA 745
Cdd:COG4235    107 AWQKLLALLPADAP 120
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
655-783 2.39e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 2.39e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  655 NLQAAAKFYEKG-AMQQKDPVMMYDYGVVLLRgqgvKQDIPKALEYLKKAADMN--FVPALNSLGWYYERyEGDYEKAIE 731
Cdd:COG0457     57 RYEEALADYEQAlELDPDDAEALNNLGLALQA----LGRYEEALEDYDKALELDpdDAEALYNLGLALLE-LGRYDEAIE 131

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1050391290  732 YWERADEL--WNAEAAFNLGIMYFNgyypgQGRnYTAAYHYYLKSATRGHIDAA 783
Cdd:COG0457    132 AYERALELdpDDADALYNLGIALEK-----LGR-YEEALELLEKLEAAALAALL 179
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 637-770 2.07e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.96  E-value: 2.07e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  637 AQQSVSRMLYWGQQGissNLQAAAKFYEKG-AMQQKDPVMMYDYGVVLLRgqgvKQDIPKALEYLKKAADM--NFVPALN 713
Cdd:COG4783      4 AEALYALAQALLLAG---DYDEAEALLEKAlELDPDNPEAFALLGEILLQ----LGDLDEAIVLLHEALELdpDEPEARL 76

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1050391290  714 SLGWYYERyEGDYEKAIEYWERADELW--NAEAAFNLGIMYFNgyypgQGRNYTAAYHY 770
Cdd:COG4783     77 NLGLALLK-AGDYDEALALLEKALKLDpeHPEAYLRLARAYRA-----LGRPDEAIAAL 129
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 572-770 4.39e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.84  E-value: 4.39e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  572 DYDLSYAYYANIAFQSTEDRLQPNRDQSYVETIRLIDEEVLKLQTKEDDDLFMWLRYQAKQGVISAQQSVSRMLYWGQQG 651
Cdd:COG3914     13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALG 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  652 issNLQAAAKFYEKgAMQQ--KDPVMMYDYGVVLLRgqgvKQDIPKALEYLKKAADMN--FVPALNSLGWYYERyEGDYE 727
Cdd:COG3914     93 ---RYEEALALYRR-ALALnpDNAEALFNLGNLLLA----LGRLEEALAALRRALALNpdFAEAYLNLGEALRR-LGRLE 163

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1050391290  728 KAIEYWERADELW--NAEAAFNLGIMYFNgyypgQGRNYTAAYHY 770
Cdd:COG3914    164 EAIAALRRALELDpdNAEALNNLGNALQD-----LGRLEEAIAAY 203
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 655-754 5.33e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 5.33e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  655 NLQAAAKFYEKGAMQQKDPVMMYDYGVVLLRGQGvkqDIPKALEYLKKAADM--NFVPALNSLGWYYERyEGDYEKAIEY 732
Cdd:COG5010     35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG---DFEESLALLEQALQLdpNNPELYYNLALLYSR-SGDKDEAKEY 110

                           90       100
                   ....*....|....*....|....
gi 1050391290  733 WERADELW--NAEAAFNLGIMYFN 754
Cdd:COG5010    111 YEKALALSpdNPNAYSNLAALLLS 134
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 676-707 1.88e-06

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 45.21  E-value: 1.88e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1050391290  676 MYDYGVVLLRGQGVKQDIPKALEYLKKAADMN 707
Cdd:pfam08238    4 QYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 655-752 5.22e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 5.22e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  655 NLQAAAKFYEK-GAMQQKDPVMMYDYGVVLLRgqgvKQDIPKALEYLKKA--ADMNFVPALNSLGWYYERyEGDYEKAIE 731
Cdd:COG2956    125 DWEKAIEVLERlLKLGPENAHAYCELAELYLE----QGDYDEAIEALEKAlkLDPDCARALLLLAELYLE-QGDYEEAIA 199

                           90       100
                   ....*....|....*....|...
gi 1050391290  732 YWERADEL--WNAEAAFNLGIMY 752
Cdd:COG2956    200 ALERALEQdpDYLPALPRLAELY 222
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
690-773 5.96e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 5.96e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  690 KQDIPKALEYLKKA--ADMNFVPALNSLGWYYERyEGDYEKAIEYwERADELW--NAEAAFNLGIMYFngyypgQGRNYT 765
Cdd:COG3063      5 LGDLEEAEEYYEKAleLDPDNADALNNLGLLLLE-QGRYDEAIAL-EKALKLDpnNAEALLNLAELLL------ELGDYD 76


                   ....*...
gi 1050391290  766 AAYHYYLK 773
Cdd:COG3063     77 EALAYLER 84
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 742-779 1.09e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 42.93  E-value: 1.09e-05
                            10        20        30
                    ....*....|....*....|....*....|....*...
gi 1050391290   742 AEAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSATRGH 779
Cdd:smart00671    1 AEAQYNLGQMYEYGL--GVPKDLEKALEYYKKAAELGN 36
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 673-707 3.06e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 41.78  E-value: 3.06e-05
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 1050391290   673 PVMMYDYGVVLLRGQGVKQDIPKALEYLKKAADMN 707
Cdd:smart00671    1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
703-785 5.19e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.15  E-value: 5.19e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  703 AADMNFVPALNSLGWYYERyEGDYEKAIEYWERADEL--WNAEAAFNLGIMYFNgyypgQGRnYTAAYHYYLKSATRGHI 780
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRR-LGRYEEAIEDYEKALELdpDDAEALYNLGLAYLR-----LGR-YEEALADYEQALELDPD 74


                   ....*
gi 1050391290  781 DAAVH 785
Cdd:COG0457     75 DAEAL 79
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
655-739 6.97e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.46  E-value: 6.97e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  655 NLQAAAKFYEKG-AMQQKDPVMMYDYGVVLLRgqgvKQDIPKALEYLK-KAADMNFVPALNSLGWYYERyEGDYEKAIEY 732
Cdd:COG3063      7 DLEEAEEYYEKAlELDPDNADALNNLGLLLLE----QGRYDEAIALEKaLKLDPNNAEALLNLAELLLE-LGDYDEALAY 81


                   ....*..
gi 1050391290  733 WERADEL 739
Cdd:COG3063     82 LERALEL 88
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 655-739 9.13e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 9.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  655 NLQAAAKFYEKG-AMQQKDPVMMYDYGVVLLRgqgvKQDIPKALEYLKKAADMN--FVPALNSLGWYYERyEGDYEKAIE 731
Cdd:COG4783     53 DLDEAIVLLHEAlELDPDEPEARLNLGLALLK----AGDYDEALALLEKALKLDpeHPEAYLRLARAYRA-LGRPDEAIA 127


                   ....*...
gi 1050391290  732 YWERADEL 739
Cdd:COG4783    128 ALEKALEL 135
TPR COG0790
TPR repeat [General function prediction only];
504-705 1.02e-04

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 44.92  E-value: 1.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  504 ISLLLQAGCLGYHPALYLASVLFQTGFGIKMDPSKALMLKLIAAQKDDRLSLMSLGhkhhmggdgypvdydlsyayyani 583
Cdd:COG0790    123 LEWYEKAAEQGDADAQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLG------------------------ 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  584 afqstedrlqpnrdqsyvetirlideevlklqtkedddlfmwlryqakqgvisaqqsvsrMLYWGQQGISSNLQAAAKFY 663
Cdd:COG0790    179 ------------------------------------------------------------VLYENGRGVPKDPAKALEWY 198

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1050391290  664 EKGAmQQKDPVMMYDYGVVLLRGQGVKQDIPKALEYLKKAAD 705
Cdd:COG0790    199 RKAA-EQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAE 239
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 742-778 2.54e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.04  E-value: 2.54e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1050391290  742 AEAAFNLGIMYFNGYypGQGRNYTAAYHYYLKSATRG 778
Cdd:pfam08238    1 AEAQYRLGYLYLYGL--GVPKDPEKALEWYEKAAELG 35
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 655-739 4.17e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 4.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  655 NLQAAAKFYEKG-AMQQKDPVMMYDYGVVLLRgqgvKQDIPKALEYLKKAADMN--FVPALNSLGWYYERyEGDYEKAIE 731
Cdd:COG5010     69 DFEESLALLEQAlQLDPNNPELYYNLALLYSR----SGDKDEAKEYYEKALALSpdNPNAYSNLAALLLS-LGQDDEAKA 143


                   ....*...
gi 1050391290  732 YWERADEL 739
Cdd:COG5010    144 ALQRALGT 151
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 690-773 4.47e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 4.47e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  690 KQDIPKALEYLKKAADMN--FVPALNSLGWYYERyEGDYEKAIEYWERADEL--WNAEAAFNLGIMYFNgyypgQGRnYT 765
Cdd:COG2956     21 NGQPDKAIDLLEEALELDpeTVEAHLALGNLYRR-RGEYDRAIRIHQKLLERdpDRAEALLELAQDYLK-----AGL-LD 93


                   ....*...
gi 1050391290  766 AAYHYYLK 773
Cdd:COG2956     94 RAEELLEK 101
TPR COG0790
TPR repeat [General function prediction only];
504-587 7.07e-04

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 42.61  E-value: 7.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  504 ISLLLQAGCLGYHPALYLASVLFQTGFGIKMDPSKALMLKLIAAQKDDRLSLMSLGhKHHMGGDGYPVDYDLSYAYYANI 583
Cdd:COG0790    159 AEWYRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLG-RLYLNGEGVEKDLEKALRWLRKA 237


                   ....
gi 1050391290  584 AFQS 587
Cdd:COG0790    238 AEQA 241
Laminin_G_2 pfam02210
Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G ...
 257-364 7.63e-04

Laminin G domain; This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.


Pssm-ID: 460494 [Multi-domain]  Cd Length: 126  Bit Score: 40.48  E-value: 7.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  257 LFYHVGDDSDYssPTVLLnSEGQLHIQVDLMSGKTYAFQSFVSLPLNQWCQIHLILDNSLANLTVicDDDPPSmmSYRFP 336
Cdd:pfam02210   10 LLYAGGGGSDF--LALEL-VNGRLVLRYDLGSGPESLLSSGKNLNDGQWHSVRVERNGNTLTLSV--DGQTVV--SSLPP 82

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1050391290  337 TSVYLDDTTGYFSLTGCQFVSGI------IGFLG 364
Cdd:pfam02210   83 GESLLLNLNGPLYLGGLPPLLLLpalpvrAGFVG 116
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 656-748 1.47e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 42.67  E-value: 1.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  656 LQAAAKFYEK-GAMQQKDPVMMYDYGVVLLRgqgvKQDIPKALEYLKKAADM--NFVPALNSLGWYYERyEGDYEKAIEY 732
Cdd:COG3914    128 LEEALAALRRaLALNPDFAEAYLNLGEALRR----LGRLEEAIAALRRALELdpDNAEALNNLGNALQD-LGRLEEAIAA 202

                           90
                   ....*....|....*...
gi 1050391290  733 WERADELW--NAEAAFNL 748
Cdd:COG3914    203 YRRALELDpdNADAHSNL 220
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 656-785 3.85e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 3.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  656 LQAAAKFYEKGAMQQKDPVMMYDYGVVLLRGQGVKQDIPKALEYLKKAADMNFVPALNSLGWYYERyEGDYEKAIEYWER 735
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNK-LGDFEESLALLEQ 79

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1050391290  736 ADELW--NAEAAFNLGIMYFNgyypgQGRnYTAAYHYYLKSATRGHIDAAVH 785
Cdd:COG5010     80 ALQLDpnNPELYYNLALLYSR-----SGD-KDEAKEYYEKALALSPDNPNAY 125
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
656-778 4.36e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.90  E-value: 4.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  656 LQAAAKFYEKGAMQQKDPVMMYDYGVVLLRGQGV----KQDIPKALEYLKKAADMN--FVPALNSLGWYYERyEGDYEKA 729
Cdd:COG4785     48 LAAAALAAAALAAERIDRALALPDLAQLYYERGVaydsLGDYDLAIADFDQALELDpdLAEAYNNRGLAYLL-LGDYDAA 126

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1050391290  730 IEYWERADEL--WNAEAAFNLGIMYFN-GYYPGQGRNYTAAYHYYLKSATRG 778
Cdd:COG4785    127 LEDFDRALELdpDYAYAYLNRGIALYYlGRYELAIADLEKALELDPNDPERA 178
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 695-773 8.14e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.33  E-value: 8.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1050391290  695 KALEYLKKAADMN--FVPALNSLGWYYERyEGDYEKAIEYWERADELW--NAEAAFNLGIMYFngyypGQGrNYTAAYHY 770
Cdd:COG2956     94 RAEELLEKLLELDpdDAEALRLLAEIYEQ-EGDWEKAIEVLERLLKLGpeNAHAYCELAELYL-----EQG-DYDEAIEA 166


                   ...
gi 1050391290  771 YLK 773
Cdd:COG2956    167 LEK 169
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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