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Conserved domains on  [gi|1084977224|gb|OGR89825|]
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hypothetical protein A3A86_07120 [Elusimicrobia bacterium RIFCSPLOWO2_01_FULL_60_11]

Protein Classification

c-type cytochrome( domain architecture ID 10601782)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; such as Pseudomonas putida 4-cresol dehydrogenase [hydroxylating] cytochrome c subunit that binds 1 heme c group per subunit

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  12594933|10647174|18568041|10395550|31252007|22723177
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
55-115 1.73e-04

Cytochrome C oxidase, cbb3-type, subunit III;


:

Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 37.77  E-value: 1.73e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1084977224  55 KEGYRVFLAVCGACHTSAR---PLNSPYVKPGEWKRFVERMHVKMEVRGIALSQADADRIIEFL 115
Cdd:pfam13442   4 AAGEALYAANCASCHGTGGagpSLAGRALPPEALVDIIRNGKGAMPAFGGDLSDEELEALAAYL 67
 
Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
55-115 1.73e-04

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 37.77  E-value: 1.73e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1084977224  55 KEGYRVFLAVCGACHTSAR---PLNSPYVKPGEWKRFVERMHVKMEVRGIALSQADADRIIEFL 115
Cdd:pfam13442   4 AAGEALYAANCASCHGTGGagpSLAGRALPPEALVDIIRNGKGAMPAFGGDLSDEELEALAAYL 67
 
Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
55-115 1.73e-04

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 37.77  E-value: 1.73e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1084977224  55 KEGYRVFLAVCGACHTSAR---PLNSPYVKPGEWKRFVERMHVKMEVRGIALSQADADRIIEFL 115
Cdd:pfam13442   4 AAGEALYAANCASCHGTGGagpSLAGRALPPEALVDIIRNGKGAMPAFGGDLSDEELEALAAYL 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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