NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1125377456|gb|OLD15055|]
View 

hypothetical protein AUI97_00235 [Crenarchaeota archaeon 13_1_40CM_3_52_17]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Adenine_glyco super family cl01059
Methyladenine glycosylase; The DNA-3-methyladenine glycosylase I is constitutively expressed ...
 2-98 5.57e-33

Methyladenine glycosylase; The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.


The actual alignment was detected with superfamily member COG2818:

Pssm-ID: 470051  Cd Length: 191  Bit Score: 114.80  E-value: 5.57e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125377456   2 KPPKDDAEYFERLTKSVFTAGLNWSVVENKWPDFQKAFAQFSLPKVAKFNAKDVKVLMGNTGIVRNEKKIKATIHNAGEF 81
Cdd:COG2818    27 VPVHDDRALFEKLCLEGFQAGLSWITILRKREAFRAAFDGFDPEKVAAYDEADVERLLADPGIIRNRLKIEATINNARAF 106

                          90
                  ....*....|....*..
gi 1125377456  82 LRLQKEFGSVKRYIDSY 98
Cdd:COG2818   107 LALQEEFGSFSAYLWSF 123
 
Name Accession Description Interval E-value
Tag COG2818
3-methyladenine DNA glycosylase Tag [Replication, recombination and repair];
2-98 5.57e-33

3-methyladenine DNA glycosylase Tag [Replication, recombination and repair];


Pssm-ID: 442066  Cd Length: 191  Bit Score: 114.80  E-value: 5.57e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125377456   2 KPPKDDAEYFERLTKSVFTAGLNWSVVENKWPDFQKAFAQFSLPKVAKFNAKDVKVLMGNTGIVRNEKKIKATIHNAGEF 81
Cdd:COG2818    27 VPVHDDRALFEKLCLEGFQAGLSWITILRKREAFRAAFDGFDPEKVAAYDEADVERLLADPGIIRNRLKIEATINNARAF 106

                          90
                  ....*....|....*..
gi 1125377456  82 LRLQKEFGSVKRYIDSY 98
Cdd:COG2818   107 LALQEEFGSFSAYLWSF 123
Adenine_glyco pfam03352
Methyladenine glycosylase; The DNA-3-methyladenine glycosylase I is constitutively expressed ...
 2-95 2.68e-32

Methyladenine glycosylase; The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.


Pssm-ID: 460894  Cd Length: 177  Bit Score: 112.49  E-value: 2.68e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125377456   2 KPPKDDAEYFERLTKSVFTAGLNWSVVENKWPDFQKAFAQFSLPKVAKFNAKDVKVLMGNTGIVRNEKKIKATIHNAGEF 81
Cdd:pfam03352  18 VPVHDDRKLFELLCLEGFQAGLSWITILKKREAFREAFDGFDPEKVAKYDEADIERLLADPGIIRNRLKIEAAINNARAF 97

                          90
                  ....*....|....
gi 1125377456  82 LRLQKEFGSVKRYI 95
Cdd:pfam03352  98 LKIQEEFGSFSDYL 111
 
Name Accession Description Interval E-value
Tag COG2818
3-methyladenine DNA glycosylase Tag [Replication, recombination and repair];
2-98 5.57e-33

3-methyladenine DNA glycosylase Tag [Replication, recombination and repair];


Pssm-ID: 442066  Cd Length: 191  Bit Score: 114.80  E-value: 5.57e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125377456   2 KPPKDDAEYFERLTKSVFTAGLNWSVVENKWPDFQKAFAQFSLPKVAKFNAKDVKVLMGNTGIVRNEKKIKATIHNAGEF 81
Cdd:COG2818    27 VPVHDDRALFEKLCLEGFQAGLSWITILRKREAFRAAFDGFDPEKVAAYDEADVERLLADPGIIRNRLKIEATINNARAF 106

                          90
                  ....*....|....*..
gi 1125377456  82 LRLQKEFGSVKRYIDSY 98
Cdd:COG2818   107 LALQEEFGSFSAYLWSF 123
Adenine_glyco pfam03352
Methyladenine glycosylase; The DNA-3-methyladenine glycosylase I is constitutively expressed ...
 2-95 2.68e-32

Methyladenine glycosylase; The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.


Pssm-ID: 460894  Cd Length: 177  Bit Score: 112.49  E-value: 2.68e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125377456   2 KPPKDDAEYFERLTKSVFTAGLNWSVVENKWPDFQKAFAQFSLPKVAKFNAKDVKVLMGNTGIVRNEKKIKATIHNAGEF 81
Cdd:pfam03352  18 VPVHDDRKLFELLCLEGFQAGLSWITILKKREAFREAFDGFDPEKVAKYDEADIERLLADPGIIRNRLKIEAAINNARAF 97

                          90
                  ....*....|....
gi 1125377456  82 LRLQKEFGSVKRYI 95
Cdd:pfam03352  98 LKIQEEFGSFSDYL 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH