|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.28e-165 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 465.47 E-value: 1.28e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 1 MNPVVLTMILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIH 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 81 SGQWSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINLHLLLLMSLT 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 241 TSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSLTMFPSTNNMKIKWQFNNS 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 146289864 321 KSMNLLSPMIILSTLILPLSPMLALLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
25-286 |
6.42e-21 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 91.22 E-value: 6.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 25 HWLLVWIGFEMNMLAIIP-ILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIHSGQWSTTN--------PLDPTTS 95
Cdd:pfam00361 3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDElskaltggLNSSGLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 96 II---MTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILL-TWQKLAP-----MSILYQISPTINLHLLLLMSLTSILIGG 166
Cdd:pfam00361 83 LLfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLLGS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 167 WGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIIL---------TTTTFMTFMMSSSTTTLSLSHLWNKM 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThglfsaglfLCAGSVIYRRVHTRNIRDYGGLAKTM 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 146289864 238 PLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITA 286
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-298 |
9.86e-19 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 86.71 E-value: 9.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 8 MILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIV--------INL 78
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISllygatgsLNL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 79 IHSGQWSTTNPLDPT---TSIIMTLA-LAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINLHLL 154
Cdd:COG1007 186 AGIAAALAAGGANSPlllLGLVLVLAgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 155 LLMSLTSILI-------GGWGGLNQTQLRKIMAYSSIAHMGWM------------TTIMIYNPTMALLNltiyiilTTTT 215
Cdd:COG1007 266 ADWQLLLAVLavlsmtvGNLAALAQTNVKRMLAYSSIAHAGYLllglaagtplgvSAALFYLLAYLFMN-------LGAF 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 216 FMTFMMSSSTTTLSLSHLWN----KMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLF 291
Cdd:COG1007 339 AVILLLSRKGGEAEEIEDLAglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418
|
....*..
gi 146289864 292 FYMRLAY 298
Cdd:COG1007 419 YYLRVVK 425
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
9-297 |
2.30e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 79.61 E-value: 2.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 9 ILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAI------------- 74
Cdd:TIGR01770 107 LLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGIsliygftgslnfe 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 75 VINLIHSGQwSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTI----- 149
Cdd:TIGR01770 187 DLLLFLSNG-MLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfs 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 150 --NLHLLLLMSLTSILIGGWGGLNQTQLRKIMAYSSIAHMGW------------MTTIMIYNPTMALLNLTIYIILTTTT 215
Cdd:TIGR01770 266 eaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligllagtlegIKAVLFYIFIYALMSLGAFGVLSLLR 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 216 FMTFMMSSSTTTLSLSHLWNkmPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMR 295
Cdd:TIGR01770 346 SYKDEWIEYISDFAGLFKTN--PILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
..
gi 146289864 296 LA 297
Cdd:TIGR01770 424 VV 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.28e-165 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 465.47 E-value: 1.28e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 1 MNPVVLTMILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIH 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 81 SGQWSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINLHLLLLMSLT 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 241 TSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSLTMFPSTNNMKIKWQFNNS 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*..
gi 146289864 321 KSMNLLSPMIILSTLILPLSPMLALLE 347
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
5.48e-118 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 344.87 E-value: 5.48e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 1 MNPVVLTMILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIH 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 81 SGQWSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTiNLHLLLLMSLT 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 241 TSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSLTMFPSTNNMKIKWQFNNS 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*..
gi 146289864 321 KSMNLLSPMIILSTLILPLSP-MLALL 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPaILALL 346
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-343 |
1.31e-114 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 336.02 E-value: 1.31e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 1 MNPVVLTMILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIH 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 81 SGQWSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINLHLLLLMSLT 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 241 TSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSLTMFPSTNNMKIKWQFNNS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|...
gi 146289864 321 KSmNLLSPMIILSTLILPLSPML 343
Cdd:MTH00112 321 KN-TLTATLTTLSTLLLPLSPMI 342
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.10e-110 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 324.95 E-value: 3.10e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 1 MNPVVLTMILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIH 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 81 SGQWSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINLHLLLLMSLT 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 241 TSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSLTMFPSTNNMKIKWQFNNS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
330 340
....*....|....*....|....*.
gi 146289864 321 KSMnLLSPMIILSTLILPLSPMLALL 346
Cdd:MTH00070 321 TNN-LLSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-339 |
3.07e-86 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 263.71 E-value: 3.07e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 1 MNPVVLTMILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIH 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 81 SGQWSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINLHLLLLMSLT 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 241 TSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSLTMFPSTNNMKIKWQFNNS 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330 340
....*....|....*....|....
gi 146289864 321 KS-----MNLLSPMIILSTLILPL 339
Cdd:MTH00041 321 ITvygviLSILSSISILGLLLIPL 344
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
1.12e-83 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 257.20 E-value: 1.12e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 1 MNPVVLTMILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIH 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 81 SGQWSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINLHLLLLMSLT 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 161 SILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 241 TSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSLTMFPSTNNMKIKWQfNNS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR-TKS 319
|
330 340
....*....|....*....|....*.
gi 146289864 321 KSMNLLSPMIILSTLILPLSPMLALL 346
Cdd:MTH00200 320 NSNLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
8-339 |
8.35e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 169.62 E-value: 8.35e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 8 MILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIHSgqwstt 87
Cdd:MTH00160 9 LFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNL------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 88 NPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQIsptINLHLLLLMSLTSILIGGW 167
Cdd:MTH00160 83 MLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIGAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 168 GGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLLTSAVLMT 247
Cdd:MTH00160 160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 248 MLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSLTMFPSTNNMKIKWQFNNSKSMNLLS 327
Cdd:MTH00160 240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLS 319
|
330
....*....|..
gi 146289864 328 PMIILSTLILPL 339
Cdd:MTH00160 320 FISLFGLILSSL 331
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
8-336 |
1.57e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 165.83 E-value: 1.57e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 8 MILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIHSGQWSTt 87
Cdd:MTH00144 8 LFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 88 npldpttSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINLHLLLLMS-LTSILIGG 166
Cdd:MTH00144 87 -------MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVIsVLSALVGS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 167 WGGLNQTQLRKIMAYSSIAHMGWMtTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLLTSAVLM 246
Cdd:MTH00144 160 IGGLNQTQVRALLAYSSISHTGWM-LVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIIS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 247 TMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSLTMFPSTNNMKIKWQFNNSKSMNLL 326
Cdd:MTH00144 239 LLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNLL 318
|
330
....*....|
gi 146289864 327 SPMIILSTLI 336
Cdd:MTH00144 319 GGLLFLLLYL 328
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
12-299 |
1.26e-41 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 148.00 E-value: 1.26e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 12 TIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVInlihsgQWSTTNPLD 91
Cdd:MTH00011 14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 92 PTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINLHLLLLMSLTSILIGGWGGLN 171
Cdd:MTH00011 88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 172 QTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLLTSAVLMTMLSL 251
Cdd:MTH00011 168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 146289864 252 GGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYS 299
Cdd:MTH00011 248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-345 |
1.75e-36 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 134.03 E-value: 1.75e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 8 MILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIHsgqwstt 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSN------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 88 NPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPtiNLHLLLLMSLTSILIGGW 167
Cdd:MTH00197 75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 168 GGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLLTSAVLMT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 248 MLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSltmfpstnnMKIKWQFNNSKSMNLLS 327
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSL---------ILSNWMINFLMKINLLY 303
|
330
....*....|....*...
gi 146289864 328 PMIILSTLILPLSPMLAL 345
Cdd:MTH00197 304 SGLFILLMMMLPLLMIFT 321
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-296 |
9.25e-23 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 97.41 E-value: 9.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 13 IMLGTVIVMTTSHWLLVWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIV-------------INL 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCAllcgttgglhlsyINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 79 IHSGQWSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINlhLLLLMS 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 159 LTSILIGGWGGLNQTQLRKIMAYSSIAHMGW------MTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSH 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFvlwgieIGSFESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 146289864 233 LWNKMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
25-286 |
6.42e-21 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 91.22 E-value: 6.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 25 HWLLVWIGFEMNMLAIIP-ILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIHSGQWSTTN--------PLDPTTS 95
Cdd:pfam00361 3 DLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDElskaltggLNSSGLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 96 II---MTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILL-TWQKLAP-----MSILYQISPTINLHLLLLMSLTSILIGG 166
Cdd:pfam00361 83 LLfllILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLLGS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 167 WGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIIL---------TTTTFMTFMMSSSTTTLSLSHLWNKM 237
Cdd:pfam00361 163 LAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThglfsaglfLCAGSVIYRRVHTRNIRDYGGLAKTM 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 146289864 238 PLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITA 286
Cdd:pfam00361 243 PILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
8-345 |
4.77e-19 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 87.76 E-value: 4.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 8 MILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVINLIHSGQWST 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 87 ----TNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINlhLLLLMSLTSI 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 163 LIGGWGGLNQTQLRKIMAYSSIAHMGWmttiMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWN------- 235
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGF----ILFGVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKGlivevsg 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 236 ---KMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLaysTSLTMFPSTNNMK 312
Cdd:MTH00199 335 lsrKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV---VQIIYFQADYSIL 411
|
330 340 350
....*....|....*....|....*....|....*
gi 146289864 313 IkWQ--FNNSKSMNLLSPMIILSTLILPLSPMLAL 345
Cdd:MTH00199 412 I-WQkvLKKEERLDLSKSILIGVTFFIILFLMISP 445
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-298 |
9.86e-19 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 86.71 E-value: 9.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 8 MILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIV--------INL 78
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLyVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYGISllygatgsLNL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 79 IHSGQWSTTNPLDPT---TSIIMTLA-LAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTINLHLL 154
Cdd:COG1007 186 AGIAAALAAGGANSPlllLGLVLVLAgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLVEAFPGLA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 155 LLMSLTSILI-------GGWGGLNQTQLRKIMAYSSIAHMGWM------------TTIMIYNPTMALLNltiyiilTTTT 215
Cdd:COG1007 266 ADWQLLLAVLavlsmtvGNLAALAQTNVKRMLAYSSIAHAGYLllglaagtplgvSAALFYLLAYLFMN-------LGAF 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 216 FMTFMMSSSTTTLSLSHLWN----KMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLF 291
Cdd:COG1007 339 AVILLLSRKGGEAEEIEDLAglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418
|
....*..
gi 146289864 292 FYMRLAY 298
Cdd:COG1007 419 YYLRVVK 425
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
9-297 |
2.30e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 79.61 E-value: 2.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 9 ILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAI------------- 74
Cdd:TIGR01770 107 LLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGIsliygftgslnfe 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 75 VINLIHSGQwSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISPTI----- 149
Cdd:TIGR01770 187 DLLLFLSNG-MLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfs 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 150 --NLHLLLLMSLTSILIGGWGGLNQTQLRKIMAYSSIAHMGW------------MTTIMIYNPTMALLNLTIYIILTTTT 215
Cdd:TIGR01770 266 eaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligllagtlegIKAVLFYIFIYALMSLGAFGVLSLLR 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 216 FMTFMMSSSTTTLSLSHLWNkmPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMR 295
Cdd:TIGR01770 346 SYKDEWIEYISDFAGLFKTN--PILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLR 423
|
..
gi 146289864 296 LA 297
Cdd:TIGR01770 424 VV 425
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
1-296 |
2.89e-13 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 70.23 E-value: 2.89e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 1 MNPVVLTMILLTImLGTVIVMTTSHWLLVWIGFEMNMLAI-IPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVI--- 76
Cdd:PRK05777 101 GRGEFYLLVLFAL-LGMMVMVSANDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLlyg 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 77 --------NLIHSGQWSTTNPLDPTTSIIMTLA-LAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQI-- 145
Cdd:PRK05777 180 atgslsfaGIAKALADGSGNSLLLLFGLVFLLVgLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlv 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 146 -----SPTINLHLLLLMSLTSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFM 220
Cdd:PRK05777 260 vafggLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 221 MSSSTTTLSLSHLWN---------KMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLF 291
Cdd:PRK05777 340 GVISLLRRKGGEAESisdfaglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAF 419
|
....*
gi 146289864 292 FYMRL 296
Cdd:PRK05777 420 YYLRV 424
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
291-341 |
3.35e-12 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 60.73 E-value: 3.35e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 146289864 291 FFYMRLAYSTSLTMFPSTNNMKIKWQFNNSKSMNLLSPMIILSTLILPLSP 341
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
6-301 |
3.84e-11 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 63.63 E-value: 3.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 6 LTMILLTIMLGtviVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVI--------N 77
Cdd:COG0651 112 LFLLLLAGMNG---AFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLlygatgtlN 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 78 LIHSGQWSTT--NPLDPTTSIIMTLALAMKLGLAPFHFWVPE-----------VTQGIQLSSGL--ILLTWQKLAPMSIL 142
Cdd:COG0651 189 MADLAARLAEldPGLLLAAFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPA 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 143 YQISPTInlhllLLMSLTSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTT-IMIYNP---TMALL----NLTIYIILTTT 214
Cdd:COG0651 269 LFLGTLL-----LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPlglAGALFhllnHALAKALLFLA 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 215 TFMTFMMSSSTTTLSLSHLWNKMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYM 294
Cdd:COG0651 344 AGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFV 423
|
....*..
gi 146289864 295 RLAYSTS 301
Cdd:COG0651 424 RIFGRAQ 430
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
9-190 |
3.17e-08 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 55.25 E-value: 3.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 9 ILLTIMLGTVIVMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSM---------EASTKYFLTQATASMLLMLAIVI--- 76
Cdd:MTH00198 193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALyfg 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 77 --------NLIHSGQWSTTNPLDPTTSI---IMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILyqI 145
Cdd:MTH00198 273 ftgnegmlGTILSATLETTNIELRQGSLgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--T 350
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 146289864 146 SPTINLHLLLLMSLTSILIGGWGGLNQTQLRKIMAYSSIAHMGWM 190
Cdd:MTH00198 351 SLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFI 395
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
50-191 |
1.61e-06 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 49.69 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 50 PRSMEASTKYFLTQATASMLLMLAIVINLIHSGQWS------TTNPLDPTTSII----MTLALAMKLGLAPFHFWVPEV- 118
Cdd:COG1008 157 ERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTfdiaelAAAPLPLTAQLLlflaFFIAFAVKVPMFPFHTWLPDAh 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 119 ----TQGIQLSSGLIL----------------LTWQKLAPM-------SILYqisptinlhllllmsltsiliGGWGGLN 171
Cdd:COG1008 237 veapTAGSVLLAGVLLkmggygllrfalplfpEASAYFAPLlaalgviGIIY---------------------GALVALA 295
|
170 180
....*....|....*....|
gi 146289864 172 QTQLRKIMAYSSIAHMGWMT 191
Cdd:COG1008 296 QTDLKRLIAYSSVSHMGFVL 315
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
235-337 |
3.74e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 48.43 E-value: 3.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 235 NKMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAYSTSLTMFPSTNNMKIK 314
Cdd:PRK12667 387 RKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHK 466
|
90 100
....*....|....*....|...
gi 146289864 315 wqfnNSKSMNLlsPMIILSTLIL 337
Cdd:PRK12667 467 ----ESPSMSV--VILVLALAVL 483
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
6-337 |
1.33e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 46.63 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 6 LTMILLTIMLGtviVMTTSHWLLVWIGFEMNMLAIIPIL-MKKYNPRSMEASTKYFLTQATASMLLMLAIVINLihsGQW 84
Cdd:PRK08376 126 LILLLELGMLG---MAITGDLFNFFVFLEIMSIASYALVaFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLY---GQY 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 85 STTN--------PLDPTTSIIMTLA-----LAMKLGLAPFHFWVP----EVTQGIqlSSGLILLTWQKL-APMSILYQI- 145
Cdd:PRK08376 200 GTLNmaylavkmSENPTVVAKIALAlfiagLAMKSGAVPVHMWLPdaypAAPSSI--SAMLLVIKQAGLyALARVLFSIy 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 146 SPTINLHL----LLLMSLTSILIGGWGGLNQTQLRKIMAYSSIAHMGWM-----TTIMIYNPT------MALLNLTIYII 210
Cdd:PRK08376 278 GPAINLATvgwvIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllglgVGLAALGDPamasygEIALAGGIYHI 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 211 LTTTTFMTFMMSSSTTTLSLSHLWN---------KMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIImPTI 281
Cdd:PRK08376 358 VNHALYKALLFLTAGAVIYETGTRNlnelgglarTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPIL-GVI 436
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 146289864 282 MAITALLNLFFYMRLAYstslTMFPSTNNMKIKWQFNNSKSMnlLSPMIILSTLIL 337
Cdd:PRK08376 437 AMIGSVLTLASFVKVFH----TAFFGPPSEKVMNVKEPPKPM--LVPMLILAIAII 486
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
234-300 |
1.40e-05 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 46.68 E-value: 1.40e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 146289864 234 WNKMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQEL--TKNNSIIMPTIMAITALLNLFFYMRLAYST 300
Cdd:COG1009 363 RKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAAleAGGLGPLLLAVALLGAFLTAFYSFRLFFLV 431
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
8-335 |
3.40e-05 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 45.37 E-value: 3.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 8 MILLTIMLGTVIVMTTSHWLLVWIGFEMNMLA--IIPILMKKYNprsMEASTKYFLTQATASMLLMLAIVINLIHSGQWS 85
Cdd:PRK08668 102 MFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfMMVPMGKKES---RKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFD 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 86 TT---NPLDPTTSIIMTLALAM--------KLGLAPFHFWVPEV--------------------TQGIQLSSGLILLTwq 134
Cdd:PRK08668 179 FAdisQGLINDTSTGFALIVFLfllafgvaKAGIFPLHVWAPDAyseapqsfsavlsgqlsklgAYGFLLVLYVLPGT-- 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 135 KLAPMSILYQISPTINLHLLLLMSLTSIlIGGWGGLNQTQLRKIMAYSSIAHMGW-------MTTIMIYNPTMALLNLTI 207
Cdd:PRK08668 257 KLFSEFGTYRGVPLFNYILAWLGNISII-VGTLMAILQEDIKKLIAYSSVANGGYilvglglGTSLGFAGGLFHVFNHAL 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 208 YIILTTTTFMTFMMSSSTTTLSLSH-LWNKMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITA 286
Cdd:PRK08668 336 FKGLFFLIFAAVIYRTGTTKISEMGgLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGS 415
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 146289864 287 LLNLFFYMRLAYSTSLTMFPStnnmkikwQFNNSK--SMNLLSPMIILSTL 335
Cdd:PRK08668 416 IGSFLYVFRPLAGVFLGQLPS--------DHKDVKeaPLPMLIPMAILVLL 458
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
2-191 |
4.65e-05 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 44.93 E-value: 4.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 2 NPVVLTMILLTIMLGTVI-VMTTSHWLLVWIGFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASmLLMLAIVINLIH 80
Cdd:TIGR01972 103 KRVKEFYALLLLLEAGVIgVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGS-LLMLLAILGLYF 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 81 SGQWST------TNPLDPTTSIIMTLAL----AMKLGLAPFHFWVPEV-----TQGIQLSSGLILltwqKLAP---MSIL 142
Cdd:TIGR01972 182 LGGGTFdllellNLPLPFGVQTWLFLAFfiafAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTygfLRFN 257
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 146289864 143 YQISP-TINLHLLLLMSLTSILI--GGWGGLNQTQLRKIMAYSSIAHMGWMT 191
Cdd:TIGR01972 258 LPLFPdASLYFAPVLAALGVIAIiyGALIALAQTDIKRLIAYSSISHMGFVL 309
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
27-296 |
1.39e-04 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 43.40 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 27 LLVWigFEMNMLAIIPILMKKYNPRSMEASTKYFLTQATASMLLMLAIVI--------NLIH----SGQWSTTNPLdPTT 94
Cdd:PRK12663 133 LYVW--FEVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLlygtfgtlNMAHiamrLNDMGDTATL-TTI 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 95 SIIMTLALAMKLGLAPFhFWVPEV--TQGIQLSSGLI-LLT----WQKLAPMSILYQISPTINLHLLLLMSLTSILIGGW 167
Cdd:PRK12663 210 ALLFLLAFGMKAALFPF-MWLPAAyhTPNTEVAALFAaLLTkvgiYALIRVFTLLFPQERELLHPLLATMAAITMVIGAL 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 168 GGLNQTQLRKIMAYSSIAHMGWMTT-IMIYNPT-------MALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPL 239
Cdd:PRK12663 289 GALAYKDIRRIAGYQVISSIGFILLgLALGTPAgingaifYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPL 368
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 146289864 240 LTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRL 296
Cdd:PRK12663 369 FGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
236-298 |
2.38e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 42.94 E-value: 2.38e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 146289864 236 KMPLLTSAVLMTMLSLGGLPPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRLAY 298
Cdd:PRK08375 364 RMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-296 |
6.27e-04 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 41.53 E-value: 6.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 51 RSMEASTKYFLTQATASMLLMLA----------------IVINLIHSGQWSTTNPLdpTTSIIMTLALAMKLGLAPFHFW 114
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfswlyglsggeielqeIVNGLINTQMYNSPGIS--IALIFITVGIGFKLSLAPFHQW 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 115 VPEVTQG-----------IQLSSGLILLTwqklAPMSILYQISPTINLHLLLLMSLTSILIGGWGGLNQTQLRKIMAYSS 183
Cdd:CHL00049 237 TPDVYEGsptpvvaflsvTSKVAASALAT----RIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSS 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 184 IAHMGW-MTTIMIYNP--------TMALLNLTIYIILTTTTFMTFMMSSSTTTLSLSHLWNKMPLLTSAVLMTMLSLGGL 254
Cdd:CHL00049 313 IGQIGYvIIGIIVGDSndgyasmiTYMLFYIFMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGI 392
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 146289864 255 PPLSGFSPKWMIIQELTKNNSIIMPTIMAITALLNLFFYMRL 296
Cdd:CHL00049 393 PPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-260 |
1.75e-03 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 40.03 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 9 ILLTIMLGTVIVMTTSHWLLVWIGFEMnmLAIIPILMKKY---NPRSMEASTKYFLTQATAS-MLLMLAIVINLIHSGQW 84
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLET--LSIASYLLTGYmkrDPRSNEAALKYLLIGAASSaIFLYGSSLLYGLSGGST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 85 STT---NPLDPTTSIIMTLAL-------AMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLA----PMSILYQISPTIN 150
Cdd:PRK02504 193 QLSaiaLALITSPSLGLALALvfviagiAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFD 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 151 L---HLLLLMSLTSILIGGWGGLNQTQLRKIMAYSSIAHMGWMTTIMIYNPTMALLNLTIYIILTTTTFMTFMMSSSTTT 227
Cdd:PRK02504 273 EqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEAGYASMVFYLLAYLFMNLGAFACVILFS 352
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 146289864 228 LSLSH--------LWNKMPLLTSAVLMTMLSLGGLPPLSGF 260
Cdd:PRK02504 353 LRTGTdqisdyagLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
78-263 |
9.75e-03 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 38.10 E-value: 9.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 78 LIHSGQWSTTNPLDPTTSIIMTLALAMKLGLAPFHFWVPEVTQGIQLSSGLILLTWQKLAPMSILYQISP-----TINLH 152
Cdd:PRK12650 194 ILHSDVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPvfhdvAVWNW 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146289864 153 LLLLMSLTSILIGGWGGLNQTQLRKIMAYSSIAHMGWM-TTIMIYNP---TMALLNLTIYIILTTTTFMTFMMSSSTT-- 226
Cdd:PRK12650 274 LLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIGVGTPfalTAAVVHTLAHALFKSSLFMLIGVVDHQAgt 353
|
170 180 190
....*....|....*....|....*....|....*....
gi 146289864 227 --TLSLSHLWNKMPLLTSAVLMTMLSLGGLPPLSGFSPK 263
Cdd:PRK12650 354 rdIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
|
|
| |
