|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
200-959 |
1.23e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.04 E-value: 1.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 200 LEELTEKLNEAQKQEvvsDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAkadehegaIKNKLRQTET 279
Cdd:TIGR02168 234 LEELREELEELQEEL---KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA--------LANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 280 EKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQ 359
Cdd:TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 360 DLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQM-LDRLKEIQNHFDTCEAERK 438
Cdd:TIGR02168 383 TLRSKVAQLELQIA--SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAeLEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 439 HADLQISELTRHAEDATKQAERYLSELQQsealKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE--TVDE--- 513
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEliSVDEgye 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 514 ------LTGKNNQILKEKDELKTQLYAALQQIENLRKELN--DVLTKRALQEEELHSKEEK------LRDIKSHQADLEL 579
Cdd:TIGR02168 537 aaieaaLGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLplDSIKGTEIQGNDREILKNIegflgvAKDLVKFDPKLRK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 580 EVKNSLDTIH---RLESELKKQSKIQSQMKVekAHLEEEIAE----LKKSQAQDKAKLLEMQESIKDLSAIRADLANKLA 652
Cdd:TIGR02168 617 ALSYLLGGVLvvdDLDNALELAKKLRPGYRI--VTLDGDLVRpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIA 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 653 EEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRElkdltsslqsvkTKHEQNIQELMKHFKKEKSEAENH 732
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL------------EAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 733 IRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQN-------ENENKKLKLKYQCLKDQLEEREKHISIEEEHLRR 805
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALrealdelRAELTLLNEEAANLRERLESLERRIAATERRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 806 MEEARLQLKDQLLCLETEQEsilgvigkEIDAACKTFSKDSVEKLKVFSSgpdihydPHRWLAESKTKLQWLCEELKERE 885
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIE--------ELEELIEELESELEALLNERAS-------LEEALALLRSELEELSEELRELE 907
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 166214932 886 NREKNLRHQLMLCRQQLRNLtENKESELQCLFQQIerQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALE 959
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQL-ELRLEGLEVRIDNL--QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-827 |
1.64e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.66 E-value: 1.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 160 QLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDA---ETKRALEELTEKLNEAQKqevVSDRVERRLQELEREMRTERE 236
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEkleELRLEVSELEEEIEELQK---ELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 237 LVERRQDQLGLMSLQLQEALKKQEAKADEhegaiknkLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQL 316
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEE--------LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 317 TKAEGDRKGLQHQVSQISKQQSnYQDEQGEDWRFRRgvEREKQDLEKQMSDLrVQLNFSAMASELEEVKRCMERKDKEKA 396
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIE-RLEARLERLEDRR--ERLQQEIEELLKKL-EEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 397 HLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEA-ERKHADLQ-------------------ISELTRHAEDATK 456
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlQENLEGFSegvkallknqsglsgilgvLSELISVDEGYEA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 457 QAERYLSELQQS-------------EALKEEAEKRREDLKLKAqesirqwkLKHKKLERALEKQSETVDELTGKNNQILK 523
Cdd:TIGR02168 538 AIEAALGGRLQAvvvenlnaakkaiAFLKQNELGRVTFLPLDS--------IKGTEIQGNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 524 EKDELK-------------TQLYAALQQIENLRKELN------DVLTKRAL--------------QEEELHSKEEKLRDI 570
Cdd:TIGR02168 610 FDPKLRkalsyllggvlvvDDLDNALELAKKLRPGYRivtldgDLVRPGGVitggsaktnssileRRREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 571 KSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANK 650
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 651 LAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQrELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAE 730
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT-LLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 731 NhirtlKAESLEEKNmakihrGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEAR 810
Cdd:TIGR02168 849 E-----LSEDIESLA------AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
730
....*....|....*..
gi 166214932 811 LQLKDQLLCLETEQESI 827
Cdd:TIGR02168 918 EELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-769 |
9.53e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.35 E-value: 9.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 166 QSLRDLSSEQIRLGDDFNRELSRR-------SRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELV 238
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 239 ERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKL----RQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRT 314
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEellkKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 315 QLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGV---EREKQDLEKQMSDLRVQLNF---------SAMASELE 382
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVkalLKNQSGLSGILGVLSELISVdegyeaaieAALGGRLQ 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 383 EVkrCMERKDKEKAHLASQVENltreleNGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQ--ISELTRHAEDATKQAER 460
Cdd:TIGR02168 549 AV--VVENLNAAKKAIAFLKQN------ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLgvAKDLVKFDPKLRKALSY 620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 461 YLSELQQSEALKEEAEKRRedlKLKAQESI------------------RQWKLKHKKLERALEKQSETVDELTGKNNQIL 522
Cdd:TIGR02168 621 LLGGVLVVDDLDNALELAK---KLRPGYRIvtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELE 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 523 KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQ 602
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 603 SQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATI 682
Cdd:TIGR02168 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 683 ---ITQLKLERDVHQRELKdltsSLQSVKTKHEQNIQELMKHFKKEKS---EAENHIRTLKAESLEEKNMAKIHRGQLEK 756
Cdd:TIGR02168 858 aaeIEELEELIEELESELE----ALLNERASLEEALALLRSELEELSEelrELESKRSELRRELEELREKLAQLELRLEG 933
|
650
....*....|...
gi 166214932 757 LKSQCDRLTEELT 769
Cdd:TIGR02168 934 LEVRIDNLQERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
218-837 |
1.78e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 88.07 E-value: 1.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 218 DRVERRLQELEREMRT---ERELVERRQDqlglmsLQLQEALKKQEAKADEHEgAIKNKLRQTETEKNQLEQELELSRRL 294
Cdd:COG1196 189 ERLEDILGELERQLEPlerQAEKAERYRE------LKEELKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 295 LNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfRRGVEREKQDLEKQMSDLRVQLNf 374
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER-------RRELEERLEELEEELAELEEELE- 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 375 sAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDA 454
Cdd:COG1196 334 -ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 455 TKQAERYLSELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSEtvdeltgknnQILKEKDELKTQLYA 534
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEE-EALEEAAEEEAELEEEEEALLELLA----------ELLEEAALLEAALAE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 535 ALQQIENLRKELNdvLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEK--AHL 612
Cdd:COG1196 482 LLEELAEAAARLL--LLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEddEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 613 EEEIAELKKSQAQDKAKLLEmqesikDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDV 692
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPL------DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 693 HQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNE 772
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 166214932 773 NENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDA 837
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
174-810 |
1.25e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 85.96 E-value: 1.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 174 EQIRLGDDFNRELSRR---SRSDAETKRALE----ELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlg 246
Cdd:PTZ00121 1144 EARKAEDAKRVEIARKaedARKAEEARKAEDakkaEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE-- 1221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 247 lMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRR---LLNQSEGSRETLLHQVEELRT--QLTKAEG 321
Cdd:PTZ00121 1222 -DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARrqaAIKAEEARKADELKKAEEKKKadEAKKAEE 1300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 322 DRKGLQHQVSQISKQQSNYQDEQGEDWRfRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQ 401
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAEEAK-KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 402 VENLTRELENGEK--QQLQMLDRLKEIQNHFDTCEAERKHAD--LQISELTRHAEDATKQAErylsELQQSEALKEEAEK 477
Cdd:PTZ00121 1380 ADAAKKKAEEKKKadEAKKKAEEDKKKADELKKAAAAKKKADeaKKKAEEKKKADEAKKKAE----EAKKADEAKKKAEE 1455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 478 RR--EDLKLKAQESIRQWKLKHKKLERalekqsETVDELTGKNNQILKEKDELKTQLYAAlQQIENLRKelndvlTKRAL 555
Cdd:PTZ00121 1456 AKkaEEAKKKAEEAKKADEAKKKAEEA------KKADEAKKKAEEAKKKADEAKKAAEAK-KKADEAKK------AEEAK 1522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 556 QEEELHSKEEKLRDIKSHQAdlelEVKNSLDTIHRLEsELKKQSKIQsqmKVEKAHLEEEIAELKKSQAQ-----DKAKL 630
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKA----EEKKKADELKKAE-ELKKAEEKK---KAEEAKKAEEDKNMALRKAEeakkaEEARI 1594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 631 LEMQESIKDLSAIRADLANKlAEEERAKKAVLK---DLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSV 707
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKK-AEEAKIKAEELKkaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 708 KTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRG-QLEKLKSQCDRLTEELTQNENENKKlklKYQCLK 786
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAeELKKAEEENKIKAEEAKKEAEEDKK---KAEEAK 1750
|
650 660
....*....|....*....|....
gi 166214932 787 DQLEEREKHISIEEEHLRRMEEAR 810
Cdd:PTZ00121 1751 KDEEEKKKIAHLKKEEEKKAEEIR 1774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
160-706 |
1.67e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 1.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 160 QLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAE---TKRALEELTEKLNEAQKQEVvsdRVERRLQELEREMRTERE 236
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAEleeLRLELEELELELEEAQAEEY---ELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 237 LVERRQDQLGLMSLQLQEaLKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQL 316
Cdd:COG1196 310 RRRELEERLEELEEELAE-LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 317 TKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKA 396
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE---------EALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 397 HLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISE-LTRHAEDATKQAERYLSELQQSEALKEEA 475
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 476 EKRREDLKLK---------AQESIRQwkLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLR-KE 545
Cdd:COG1196 540 LEAALAAALQnivveddevAAAAIEY--LKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARyYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 546 LNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQ 625
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 626 DKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQ 705
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
.
gi 166214932 706 S 706
Cdd:COG1196 778 A 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
190-810 |
5.67e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 83.65 E-value: 5.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 190 SRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlglMSLQLQEALKKQEAKADEHEGA 269
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAE---DARKAEEARKAEDAKRVEIARK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 270 IKNKLRQTETEKNQLEQELELSRRLLnqsEGSRETLLHQVEELRtqltKAEGDRKglqhqVSQISKQQSNYQDEQGEDWR 349
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEAARKAE---EVRKAEELRKAEDAR----KAEAARK-----AEEERKAEEARKAEDAKKAE 1227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 350 FRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNH 429
Cdd:PTZ00121 1228 AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA 1307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 430 FDTCEAERKHADL--QISELTRHAEDATKQAERylsELQQSEALKEEAEKRREDLKlKAQESIRQWKLK---HKKLERAL 504
Cdd:PTZ00121 1308 KKKAEEAKKADEAkkKAEEAKKKADAAKKKAEE---AKKAAEAAKAEAEAAADEAE-AAEEKAEAAEKKkeeAKKKADAA 1383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 505 EKQSETV---DELTGKNNQILKEKDELKTQlYAALQQIENLRKELNDV-----LTKRALQE---EELHSKEEKLRdiKSH 573
Cdd:PTZ00121 1384 KKKAEEKkkaDEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKkkadeAKKKAEEAkkaDEAKKKAEEAK--KAE 1460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 574 QADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEE---------EIAELKKSQAQDKAKLLEMQESIKDLSAIR 644
Cdd:PTZ00121 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakkaaeakkKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 645 ADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEE-------TATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQE 717
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEdknmalrKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 718 LMKHFKKEKsEAENHIRTLKAESLEEKNMA----------KIHRGQLEKLKSQCDRLTEELTQNENENKKlklKYQCLKD 787
Cdd:PTZ00121 1621 KAEELKKAE-EEKKKVEQLKKKEAEEKKKAeelkkaeeenKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK---AAEALKK 1696
|
650 660
....*....|....*....|....*.
gi 166214932 788 QLEEREKHISI---EEEHLRRMEEAR 810
Cdd:PTZ00121 1697 EAEEAKKAEELkkkEAEEKKKAEELK 1722
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
359-959 |
5.74e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 5.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 359 QDLEKQMSDLRVQLnfsaMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERK 438
Cdd:COG1196 216 RELKEELKELEAEL----LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 439 HADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQEsirqwklkhkkLERALEKQSETVDELTGKN 518
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE-----------LEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 519 NQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQ 598
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 599 SKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDltAQAKSRDEE 678
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG--VKAALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 679 TATIITQLKLERDVHQRELKDLTSSLQSVktkheqnIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLK 758
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAA-------LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 759 SQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDqllclETEQESILGVIGKEIDAA 838
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE-----VTLEGEGGSAGGSLTGGS 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 839 CKTFSKDSVEKLkvfssgpdihydphRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQ 918
Cdd:COG1196 667 RRELLAALLEAE--------------AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 166214932 919 QIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALE 959
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
198-764 |
6.14e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 6.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 198 RALEELTEKLNEAQKQEvvsDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQT 277
Cdd:COG1196 232 LKLRELEAELEELEAEL---EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 278 ETEKNQLEQELELSRRLLNQsEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVERE 357
Cdd:COG1196 309 ERRRELEERLEELEEELAEL-EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 358 KQDLEKQMSDLRVQLNFSAMASELEEVKRcmERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAER 437
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERL--ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 438 KHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDE--LT 515
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEaaLA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 516 GKNNQILKEKDElktqlyAALQQIENLRKELNDVLTKRALQEEelhsKEEKLRDIKSHQADLELEVKNSLDTIHRLESEL 595
Cdd:COG1196 546 AALQNIVVEDDE------VAAAAIEYLKAAKAGRATFLPLDKI----RARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 596 KKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSR 675
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 676 DEETATIITQLKLERDVHQRELKDLTSSLQsvktKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIhRGQLE 755
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEA----LEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL-ERELE 770
|
....*....
gi 166214932 756 KLKSQCDRL 764
Cdd:COG1196 771 RLEREIEAL 779
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
314-833 |
6.21e-15 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 79.68 E-value: 6.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 314 TQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEdwrfrrgVEREKQDLEKQMSDLRVQLNfsamasELEEVKRCMERKDK 393
Cdd:TIGR04523 145 TEIKKKEKELEKLNNKYNDLKKQKEELENELNL-------LEKEKLNIQKNIDKIKNKLL------KLELLLSNLKKKIQ 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 394 EKAHLASQVENLtrelengEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKE 473
Cdd:TIGR04523 212 KNKSLESQISEL-------KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 474 EAEKRREDLKLKAQESIRQWKLK-HKKLERALEKQSETVDELTGKNNQILKEKDELKtqlyaalQQIENLRKELNDVLTK 552
Cdd:TIGR04523 285 ELEKQLNQLKSEISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQISQNNKIISQLN-------EQISQLKKELTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 553 RALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLE 632
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 633 MQESIKDLSairadlanklaEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVkTKHE 712
Cdd:TIGR04523 438 NNSEIKDLT-----------NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKL-NEEK 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 713 QNIQELMKHFKKEKSEAENHIRTLKAE---------SLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQ 783
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKEKIEKLESEkkekeskisDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQE 585
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 166214932 784 CLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGK 833
Cdd:TIGR04523 586 EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
276-814 |
2.22e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 78.24 E-value: 2.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 276 QTETEKNQLEQELELsrrLLNQSEGSRETLL--HQVE--ELRTQLTKAEGDRKGLQHQVSQISKQQSN--------YQDE 343
Cdd:pfam15921 246 QLEALKSESQNKIEL---LLQQHQDRIEQLIseHEVEitGLTEKASSARSQANSIQSQLEIIQEQARNqnsmymrqLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 344 QGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAmaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRL 423
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDKIEELEKQLVLAN--SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 424 KEIQNHfDTCEAerkhadLQISELTRHAEDATKQAERYLSELQqseALKEEAEKRREDLKLKAQ---ESIRQWKLKHKKL 500
Cdd:pfam15921 401 KRLWDR-DTGNS------ITIDHLRRELDDRNMEVQRLEALLK---AMKSECQGQMERQMAAIQgknESLEKVSSLTAQL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 501 ERALEKQSETVDELTGKNnQILKEKDELKTQLYAALQQIENLRKELNDVLTKR------ALQE-EELHSKEEKLRDIKSH 573
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKK-MTLESSERTVSDLTASLQEKERAIEATNAEITKLrsrvdlKLQElQHLKNEGDHLRNVQTE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 574 QADLELEVKNSLDTIHRLESELKKQSKIQSQ-------MKVEKAHLEEEI-------AELKKSQAQDKAKLLEMQESIKD 639
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEIndrrlelQEFKILKDKKDAKIRELEARVSD 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 640 LSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEEtatiITQLKLERDVHQRELKDLTSSLQSVKTKheqniqeLM 719
Cdd:pfam15921 630 LELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNE----LNSLSEDYEVLKRNFRNKSEEMETTTNK-------LK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 720 KHFKKEKSEAENHIRTLKAESLEEKNMAKI----------HRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQL 789
Cdd:pfam15921 699 MQLKSAQSELEQTRNTLKSMEGSDGHAMKVamgmqkqitaKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQEL 778
|
570 580
....*....|....*....|....*..
gi 166214932 790 E--EREKHISIEEEHLRRMEEARLQLK 814
Cdd:pfam15921 779 StvATEKNKMAGELEVLRSQERRLKEK 805
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
187-598 |
5.16e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 5.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 187 SRRSRSDAETKRALEELTEKLNEaqkqevvsdrverrLQELEREMRTERELVERRQDQLglmsLQLQEALKKQEAKADEH 266
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEE--------------LEEKIAELEKALAELRKELEEL----EEELEQLRKELEELSRQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 267 EGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGE 346
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 347 dwrfrrgVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEI 426
Cdd:TIGR02168 808 -------LRAELTLLNEEAANLRERLE--SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 427 QNhfdtceaERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKaQESIRQwKLKHKKlERALEK 506
Cdd:TIGR02168 879 LN-------ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR-LEGLEV-RIDNLQ-ERLSEE 948
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 507 QSETVDELTGKNNQILKEKDELKTQLyaalQQIENLRKELNDVltkRALQEEELHSKEEKLRDIKSHQADLELEVKNSLD 586
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRL----KRLENKIKELGPV---NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
410
....*....|..
gi 166214932 587 TIHRLESELKKQ 598
Cdd:TIGR02168 1022 AIEEIDREARER 1033
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
221-960 |
6.01e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 6.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 221 ERRlQELEREMRTERELVERRQD-------QLGLMSLQLQEALKKQEAKADEHEGAI----------KNKLRQTETEKNQ 283
Cdd:TIGR02168 172 ERR-KETERKLERTRENLDRLEDilnelerQLKSLERQAEKAERYKELKAELRELELallvlrleelREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 284 LEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEK 363
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 364 QMSDLrvQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNhfdtceaERKHADLQ 443
Cdd:TIGR02168 331 KLDEL--AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL-------QIASLNNE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 444 ISELTRHAEDATKQAERYLSElqQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILK 523
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQE--IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 524 EKDELKT--QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSL-DTIHRLESE-LKKQS 599
Cdd:TIGR02168 480 AERELAQlqARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALgGRLQAVVVEnLNAAK 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 600 KIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVL------KDLSDLTAQAK 673
Cdd:TIGR02168 560 KAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvDDLDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 674 S-----------------------RDEETATIITQLKLERDVHQRELKDLTSSLQSVktkhEQNIQELmkhfKKEKSEAE 730
Cdd:TIGR02168 640 KlrpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAEL----EKALAEL----RKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 731 NHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEAR 810
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 811 LQLKDQLLCLETEqesilgvigkeidaacktfskdsveklkvfssgpdihydphrwLAESKTKLQWLCEELKERENREKN 890
Cdd:TIGR02168 792 EQLKEELKALREA-------------------------------------------LDELRAELTLLNEEAANLRERLES 828
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 166214932 891 LRHQLMLCRQQLRNLTENKES---ELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALET 960
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEElseDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
413-744 |
7.09e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 76.65 E-value: 7.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 413 EKQQLQML-DRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQ----SEALKEEAEKRREDLKLKAQ 487
Cdd:TIGR02169 672 EPAELQRLrERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqeEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 488 EsIRQWKLKHKKLERALEKQSETVDELTGKNN------------QILKEKDELKTQLYAALQQIENLRKELNDVLTKRAL 555
Cdd:TIGR02169 752 E-IENVKSELKELEARIEELEEDLHKLEEALNdlearlshsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 556 QEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQE 635
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 636 SIKDLSAIRADLANKLAeeerAKKAVLKDLSDLTAQAKSRDEETAtIITQLKLERDVHQRELkdltSSLQSVKTKHEQNI 715
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLE----ALEEELSEIEDPKGEDEEIPEEEL-SLEDVQAELQRVEEEI----RALEPVNMLAIQEY 981
|
330 340 350
....*....|....*....|....*....|....
gi 166214932 716 QELMKHF-----KKEKSEAENHIRTLKAESLEEK 744
Cdd:TIGR02169 982 EEVLKRLdelkeKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
268-981 |
1.20e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 1.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 268 GAIKNKLRQTETEKNqleqeLELSRRLLNQSEGSRETLLHQVEELRTQLTKAEgDRKGLQHQVSQISKQQSNYQDEQGED 347
Cdd:TIGR02168 166 GISKYKERRKETERK-----LERTRENLDRLEDILNELERQLKSLERQAEKAE-RYKELKAELRELELALLVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 348 WrfRRGVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQqlqmldrlKEIQ 427
Cdd:TIGR02168 240 E--LEELQEELKEAEEELEELTAELQ--ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ--------KQIL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 428 NhfdtceAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQW---KLKHKKLERAL 504
Cdd:TIGR02168 308 R------ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeelESRLEELEEQL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 505 EKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQE-----EELHSKEEKLRDIKSHQADLEL 579
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkelqAELEELEEELEELQEELERLEE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 580 EVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLeEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKK 659
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 660 AVLKD-------------LSDLTAQAKSR---------DEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQE 717
Cdd:TIGR02168 541 AALGGrlqavvvenlnaaKKAIAFLKQNElgrvtflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSY 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 718 LMKHF-----------KKEKSEAENHIRTLKAES------------------LEEKNMAKIHRGQLEKLKSQCDRLTEEL 768
Cdd:TIGR02168 621 LLGGVlvvddldnaleLAKKLRPGYRIVTLDGDLvrpggvitggsaktnssiLERRREIEELEEKIEELEEKIAELEKAL 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 769 TQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSKdsve 848
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE---- 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 849 klkvfssgpdihydphrwLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTE---NKESELQCLFQQIERQEQ 925
Cdd:TIGR02168 777 ------------------LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaaNLRERLESLERRIAATER 838
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 166214932 926 LLDEIHREKRDLLEETQRKDEEMGSLQDRVIALETSTQVALDHLESVPEKLSLLED 981
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS 894
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
166-655 |
5.19e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 5.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 166 QSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQL 245
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 246 glmsLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKG 325
Cdd:COG1196 389 ----LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 326 LQHQVSQISKQQSNYQDEQGEdwrfrRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:COG1196 465 LAELLEEAALLEAALAELLEE-----LAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 406 TRELENGEKQQLQMLD--RLKEIQNHFDTCEAERKH--ADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRRED 481
Cdd:COG1196 540 LEAALAAALQNIVVEDdeVAAAAIEYLKAAKAGRATflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 482 LKLKAQESIRQWKLKHKKLERAL-EKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEEL 560
Cdd:COG1196 620 DTLLGRTLVAARLEAALRRAVTLaGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 561 HSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDL 640
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
490
....*....|....*
gi 166214932 641 SAIradlaNKLAEEE 655
Cdd:COG1196 780 GPV-----NLLAIEE 789
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
193-981 |
5.30e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 5.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 193 DAETKRALEELTEKLNEAQKQEVVSDRVERRLQELERemrtERELVERRQDQLglmslqlqeaLKKQEAKADEHEGAIKN 272
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRR----EREKAERYQALL----------KEKREYEGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 273 KLRQTETEKNQL---EQELELSRRLLNQSEGSRETLLHQVEELRTQLTK-AEGDRKGLQHQVSQISKQQSNYQDEQGEDw 348
Cdd:TIGR02169 235 LERQKEAIERQLaslEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEK- 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 349 rfrrgvEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELEngekqqlQMLDRLKEIQN 428
Cdd:TIGR02169 314 ------ERELEDAEERLAKLEAEID--KLLAEIEELEREIEEERKRRDKLTEEYAELKEELE-------DLRAELEEVDK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 429 HFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEAlkeeaekRREDLKLKAqESIRQwklKHKKLERALEKQS 508
Cdd:TIGR02169 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE-------ELADLNAAI-AGIEA---KINELEEEKEDKA 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 509 ETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVltkralqEEELHSKEEKLRDIKSHQ---ADLELEVKNSL 585
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL-------QRELAEAEAQARASEERVrggRAVEEVLKASI 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 586 DTIHRLESELKKqSKIQSQMKVEKAH--------------LEEEIAELKKSQAQDKA--KLLEMQESIKDLSAIRADLAN 649
Cdd:TIGR02169 521 QGVHGTVAQLGS-VGERYATAIEVAAgnrlnnvvveddavAKEAIELLKRRKAGRATflPLNKMRDERRDLSILSEDGVI 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 650 KLA--------EEERAKKAVLKD---LSDLTAQAKSRDE-----------ETATIITQLKLERDVHQRELKDLTSSLQSV 707
Cdd:TIGR02169 600 GFAvdlvefdpKYEPAFKYVFGDtlvVEDIEAARRLMGKyrmvtlegelfEKSGAMTGGSRAPRGGILFSRSEPAELQRL 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 708 KTKhEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKD 787
Cdd:TIGR02169 680 RER-LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 788 QLEEREKHISIEEEHLRRMEEARLQLKDQLLcleteqESILGVIGKEIDAACKTFSKDSveklkvfssgpDIHYDPHRWL 867
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLEARLS------HSRIPEIQAELSKLEEEVSRIE-----------ARLREIEQKL 821
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 868 AESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESelqcLFQQIERQEQLLDEIHREKRDLLEETQRKDEE 947
Cdd:TIGR02169 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEE----LEEELEELEAALRDLESRLGDLKKERDELEAQ 897
|
810 820 830
....*....|....*....|....*....|....
gi 166214932 948 MGSLQDRVIALETSTQVALDHLESVPEKLSLLED 981
Cdd:TIGR02169 898 LRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
222-948 |
7.18e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.64 E-value: 7.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 222 RRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGS 301
Cdd:PTZ00121 1027 EKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 302 RETLLHQVEELRTQLTKAEGDRKGLQ-HQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASE 380
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEaRKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE 1186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 381 L---EEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTC---EAERKHADLQISELTRHAEDA 454
Cdd:PTZ00121 1187 VrkaEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAkkaEEERNNEEIRKFEEARMAHFA 1266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 455 TKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLE-RALEKQSETVDELTGKNNQILKEKDELKTQLY 533
Cdd:PTZ00121 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEaKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 534 AALQQIENLRKELNDvlTKRALQEEELHSKEEKLrdiKSHQADLELEVKNSLDTIHRLESELKKQSKiqsqmKVEKAHLE 613
Cdd:PTZ00121 1347 AAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKK---KADAAKKKAEEKKKADEAKKKAEEDKKKAD-----ELKKAAAA 1416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 614 EEIAELKKSQAQDKAKLLEMQESIKDlsAIRADLANKLAEEER-AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDV 692
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKkAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 693 HQRELKDLTSSLQSVKTKHEQNIQELMKHfKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNE 772
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKK-ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 773 NENKKLKLKYQCLKDQLEER--------EKHISIEEEHLRRMEEARLQlKDQLLCLETEQESILGVIGKEIDaacktfSK 844
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEARieevmklyEEEKKMKAEEAKKAEEAKIK-AEELKKAEEEKKKVEQLKKKEAE------EK 1646
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 845 DSVEKLKVFSSGPDIHYDPHRWLAESKTKlqwLCEELKERENREKNLRHQLMLCRQQLRNLTE--NKESELQCLFQQIER 922
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKK---KAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEAEEKKKAEELKK 1723
|
730 740
....*....|....*....|....*.
gi 166214932 923 QEQLLDEIHREKRDLLEETQRKDEEM 948
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAEEA 1749
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
184-732 |
1.64e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.02 E-value: 1.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 184 RELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLqEALKKQEAKA 263
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI-EELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 264 DEHEGAIKNKLRQTETEKNQLE---QELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNY 340
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKkeiEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 341 QDeqgedwrfRRGVEREKQDLEKQMSDLRVQLN-FSAMASELEEVKRCMERKDKEKAHLAS-QVENLTRELENGEKQQLQ 418
Cdd:PRK03918 331 KE--------LEEKEERLEELKKKLKELEKRLEeLEERHELYEEAKAKKEELERLKKRLTGlTPEKLEKELEELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 419 MLDRLKEIQNHFDTCEAERKHADLQISELTR------------HAEDATKQAERYLSELQQSEALKEEAEKRREDLK--L 484
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRkeL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 485 KAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKE 564
Cdd:PRK03918 483 RELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 565 EKLRDIKSHQADLELEVKN----SLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDL 640
Cdd:PRK03918 563 KKLDELEEELAELLKELEElgfeSVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 641 SAIRADLANKLA----EEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKT--KHEQN 714
Cdd:PRK03918 643 EELRKELEELEKkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKleKALER 722
|
570
....*....|....*...
gi 166214932 715 IQELMKHFKKEKSEAENH 732
Cdd:PRK03918 723 VEELREKVKKYKALLKER 740
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-655 |
5.30e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 5.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 310 EELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfRRGVEREKQDLEKQMSDLRVQLnfsamaseleevkrcmE 389
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEE-------LEQLRKELEELSRQISALRKDL----------------A 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 390 RKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQI------------------SELTRHA 451
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlkeelkalrealdelrAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 452 EDATKQAERylseLQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQ 531
Cdd:TIGR02168 817 EEAANLRER----LESLERRIAATERRLEDL----EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 532 LYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNsldtihrleselkKQSKIQSQMKVEKAH 611
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN-------------LQERLSEEYSLTLEE 955
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 166214932 612 LEEEIAELKKSQAQDKAKLLEMQESIKDLSAIradlaNKLAEEE 655
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENKIKELGPV-----NLAAIEE 994
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
381-959 |
8.79e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.71 E-value: 8.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 381 LEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAER 460
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 461 YLSELQQSEALKE---EAEKRREDLKLKaqesIRQWKLKHKKLERaLEKQSETVDELTGKNNQILKEKDELKTQLYAALQ 537
Cdd:PRK03918 247 LESLEGSKRKLEEkirELEERIEELKKE----IEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 538 QIENLRKELNDVLTKRALQEE-------------ELHSKEEKLRDIKSHQADLE-LEVKNSLDTIHRLESELKKQSKIQS 603
Cdd:PRK03918 322 EINGIEERIKELEEKEERLEElkkklkelekrleELEERHELYEEAKAKKEELErLKKRLTGLTPEKLEKELEELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 604 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADL-----ANKLAEEERAKKAVLKDLSDLTAQAKSRDEE 678
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 679 TATIITQLKLERDVhqRELKDLTSSLQSVKtkheqniQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLK 758
Cdd:PRK03918 482 LRELEKVLKKESEL--IKLKELAEQLKELE-------EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 759 SqcdrLTEELTQNENENKKLKLKYQCLKDQLEERE-KHISIEEEHLRRMEEAR---LQLKDQLLCLETEQESIlgvigke 834
Cdd:PRK03918 553 E----LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYneyLELKDAEKELEREEKEL------- 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 835 idAACKTFSKDSVEKlkvfssgpdihydphrwLAESKTKLQWLCEELKERENREKNLRHqlmlcrQQLRNLTENKESELQ 914
Cdd:PRK03918 622 --KKLEEELDKAFEE-----------------LAETEKRLEELRKELEELEKKYSEEEY------EELREEYLELSRELA 676
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 166214932 915 CLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALE 959
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
283-664 |
5.31e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.02 E-value: 5.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 283 QLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDR-KGLQHQVSQISKQQSnyqdEQGEDWRFRRGVEREKQDL 361
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREReKAERYQALLKEKREY----EGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 362 EKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKAHLASQVENLTRELEN-GEKQQLQMLDRLKEIqnhfdtcEAERKHA 440
Cdd:TIGR02169 243 ERQLASLE---------EELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGEL-------EAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 441 DLQISELTRHAEDATKQAERYLSELqqsEALKEEAEKRREDlklkaqesIRQWKLKHKKLERALEKQSETVDELTGKNNQ 520
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEI---DKLLAEIEELERE--------IEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 521 ILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSK 600
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 166214932 601 IQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAiRADLANKLAEEERAKKAVLKD 664
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA-QARASEERVRGGRAVEEVLKA 518
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
199-808 |
6.10e-11 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 66.74 E-value: 6.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 199 ALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEgaiknKLRQTE 278
Cdd:pfam01576 357 ALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESE-----RQRAEL 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 279 TEK-NQLEQELELSRRLLNQSEG----------SRETLLHQVEELRTQLTKAegdRKGLQHQVSQISKQQSNYQDEQGED 347
Cdd:pfam01576 432 AEKlSKLQSELESVSSLLNEAEGkniklskdvsSLESQLQDTQELLQEETRQ---KLNLSTRLRQLEDERNSLQEQLEEE 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 348 WRFRRGVEREKQDLEKQMSDLRVQLNFSAMASE-LEEVKR-----------CMERKDKEKAHLASQVENLTRELEN---G 412
Cdd:pfam01576 509 EEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEaLEEGKKrlqrelealtqQLEEKAAAYDKLEKTKNRLQQELDDllvD 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 413 EKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKqaERYLSELQQSEALKEEAEKRREdlklkAQESIRQ 492
Cdd:pfam01576 589 LDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAR--EKETRALSLARALEEALEAKEE-----LERTNKQ 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 493 WKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQ---LYAALQQIEN--LRKELNdVLTKRALQEEELHSKEEK- 566
Cdd:pfam01576 662 LRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQleeLEDELQATEDakLRLEVN-MQALKAQFERDLQARDEQg 740
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 567 -------LRDIKSHQADLELEVK---NSLDTIHRLESELKkqsKIQSQMKVEKAHLEEEIAELKKSQAQDKakllEMQES 636
Cdd:pfam01576 741 eekrrqlVKQVRELEAELEDERKqraQAVAAKKKLELDLK---ELEAQIDAANKGREEAVKQLKKLQAQMK----DLQRE 813
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 637 IKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETatiiTQLKLERDVHQRELKDLTSSLQSVktkheqniq 716
Cdd:pfam01576 814 LEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERAR----RQAQQERDELADEIASGASGKSAL--------- 880
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 717 elmkhfKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELT--------------QNENENKKLKLKY 782
Cdd:pfam01576 881 ------QDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAaerstsqksesarqQLERQNKELKAKL 954
|
650 660
....*....|....*....|....*..
gi 166214932 783 QCLKDQLEEREKH-ISIEEEHLRRMEE 808
Cdd:pfam01576 955 QEMEGTVKSKFKSsIAALEAKIAQLEE 981
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
191-745 |
1.87e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.55 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 191 RSDAETKRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGlMSLQLQEALKKQEAKADEHEGAI 270
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKK---ADAAKKKAEEAKKAAEAAKAEAEAAADEAE-AAEEKAEAAEKKKEEAKKKADAA 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 271 KNK---LRQTETEKNQLEQELELSRRLLNQSEGSR--ETLLHQVEELRtqltKAEGDRKGLQHQVSQISKQQSNYQDEQG 345
Cdd:PTZ00121 1384 KKKaeeKKKADEAKKKAEEDKKKADELKKAAAAKKkaDEAKKKAEEKK----KADEAKKKAEEAKKADEAKKKAEEAKKA 1459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 346 EDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASEL----EEVKRCMERKDK----EKAHLASQVENLTRELENGEKQQL 417
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAkkkaDEAKKAAEAKKKadeaKKAEEAKKADEAKKAEEAKKADEA 1539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 418 QMLDRLKEiqnhfdtCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKH 497
Cdd:PTZ00121 1540 KKAEEKKK-------ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 498 KKLERALEKQSETvdeltGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKR---ALQEEELHSKEEKLRDI---- 570
Cdd:PTZ00121 1613 KKAEEAKIKAEEL-----KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaeeAKKAEEDKKKAEEAKKAeede 1687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 571 --KSHQADLELEVKNSLDTIHRLESELKKQSKiqsQMKVEKAHLEEEIAELKKSQAQDKAKLLEM---QESIKDLSAIRA 645
Cdd:PTZ00121 1688 kkAAEALKKEAEEAKKAEELKKKEAEEKKKAE---ELKKAEEENKIKAEEAKKEAEEDKKKAEEAkkdEEEKKKIAHLKK 1764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 646 DLANKLAEEERAKKAVLKDlsDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELM---KHF 722
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIEE--ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVAdskNMQ 1842
|
570 580
....*....|....*....|...
gi 166214932 723 KKEKSEAENHIRTLKAESLEEKN 745
Cdd:PTZ00121 1843 LEEADAFEKHKFNKNNENGEDGN 1865
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
153-597 |
2.08e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 2.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMR 232
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 233 TERELVERRQDQLGLMSLQLQEALKKQEAKAdEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEEL 312
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEE-EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 313 RTQLTKAEGDRKGLQHQVSQISKQQSNyqDEQGEDWRF----RRGVEREKQDLEKQMSDLRVQLNfsamASELEEVKRCM 388
Cdd:COG1196 490 AARLLLLLEAEADYEGFLEGVKAALLL--AGLRGLAGAvavlIGVEAAYEAALEAALAAALQNIV----VEDDEVAAAAI 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 389 ER-KDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQ 467
Cdd:COG1196 564 EYlKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 468 SEALKEEAEkrREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELN 547
Cdd:COG1196 644 GRLREVTLE--GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 166214932 548 DVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKK 597
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
451-794 |
9.79e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.60 E-value: 9.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 451 AEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT 530
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 531 QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKA 610
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 611 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKkavlKDLSDLTAQAKSRDEEtatIITQLKLER 690
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE----EELEKLQEKLEQLEEE---LLAKKKLES 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 691 DVHQRELKDLTSSLqSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQ 770
Cdd:pfam02463 384 ERLSSAAKLKEEEL-ELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLK 462
|
330 340
....*....|....*....|....
gi 166214932 771 NENENKKLKLKYQCLKDQLEEREK 794
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQL 486
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
399-629 |
1.50e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.24 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 399 ASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKR 478
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 479 REDLKLKAQESIRQWKLKHKKLERALEKQSETVdeltgknNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEE 558
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDF-------LDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 166214932 559 ELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAK 629
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
475-831 |
1.65e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 475 AEKRREDLKLKAQESIRQWKLKHKKLERALEKqsetvdeLTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRA 554
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSS-------LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 555 LQEEELHSKEEKLRDIKshqadlelevknslDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKllEMQ 634
Cdd:TIGR02169 734 KLKERLEELEEDLSSLE--------------QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP--EIQ 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 635 ESIKDLSAIRADLANKLAEEERAkkavLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS---SLQSVKTKH 711
Cdd:TIGR02169 798 AELSKLEEEVSRIEARLREIEQK----LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGkkeELEEELEEL 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 712 EQNIQEL---MKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLK------LKY 782
Cdd:TIGR02169 874 EAALRDLesrLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeeLSL 953
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 166214932 783 QCLKDQLEEREKHISIEE-------EHLRRMEEARLQLKDQLLCLETEQESILGVI 831
Cdd:TIGR02169 954 EDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
200-736 |
3.33e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 3.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 200 LEELTEKLNEAQKQ----EVVSDRVERRLQELEREMRTERElvERRQDQLGLMSL----QLQEALKKQEAKADEHEGAIK 271
Cdd:TIGR04523 154 LEKLNNKYNDLKKQkeelENELNLLEKEKLNIQKNIDKIKN--KLLKLELLLSNLkkkiQKNKSLESQISELKKQNNQLK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 272 NKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRfr 351
Cdd:TIGR04523 232 DNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN-- 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 352 RGVEREKQDLEKQMSDLRVQLNFSAmaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQqlqmldrLKEIQNHFD 431
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNN--KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNE-------IEKLKKENQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 432 TCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLK---LKAQESIR-------QWKLKHKKLE 501
Cdd:TIGR04523 381 SYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKetiIKNNSEIKdltnqdsVKELIIKNLD 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 502 RALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEV 581
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 582 KNSLDTIHRLESELKKqskiqSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAV 661
Cdd:TIGR04523 541 SDLEDELNKDDFELKK-----ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSL 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 662 LKDLSDLTAQAK----------SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTK--------------------- 710
Cdd:TIGR04523 616 EKELEKAKKENEklssiiknikSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKiddiielmkdwlkelslhykk 695
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 166214932 711 ----------------HEQNIQELMKHFKKEKSEAENHIRTL 736
Cdd:TIGR04523 696 yitrmirikdlpkleeKYKEIEKELKKLDEFSKELENIIKNF 737
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
183-677 |
4.17e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 4.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 183 NRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSlQLQEALKKQEAK 262
Cdd:PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELR-EIEKRLSRLEEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 263 ADEHEGAIKnKLRQTETEKNQLEQELELSRRLLNQSEGSREtLLHQVEELRTQLTKAEGDRKGLqhQVSQISKQQSNYQD 342
Cdd:PRK03918 323 INGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTGL--TPEKLEKELEELEK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 343 EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNfsamasELEEVKRCME--RKDKEKAHLASQVENLTRELENGEKQQLQML 420
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIE------ELKKAKGKCPvcGRELTEEHRKELLEEYTAELKRIEKELKEIE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 421 DRLKEIQNHFDTCEAERKHAdlqiSELTRHAE--DATKQAERYLSELQqsealKEEAEKRREDLKLKAQESIrqwklKHK 498
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKE----SELIKLKElaEQLKELEEKLKKYN-----LEELEKKAEEYEKLKEKLI-----KLK 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 499 KLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKShqadle 578
Cdd:PRK03918 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEK------ 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 579 lEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKllEMQESIKDLSAIRADLANKLAEEERAK 658
Cdd:PRK03918 613 -ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRR 689
|
490
....*....|....*....
gi 166214932 659 KAVLKDLSDLTAQAKSRDE 677
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREK 708
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
214-929 |
4.72e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 4.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 214 EVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLE---QELEL 290
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQntvHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 291 SRRLLNQSEGSRETllhQVEELRTQLTKAEGdrkgLQHQVSQISKqqsnyqdeqgeDWRFRRGVEREKQDlekQMSDLRV 370
Cdd:pfam15921 157 AKCLKEDMLEDSNT---QIEQLRKMMLSHEG----VLQEIRSILV-----------DFEEASGKKIYEHD---SMSTMHF 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 371 QLNFSAMASELEEVkrcmerkDKEKAHLASQVENLTRELENGEKQQLQMLDRLkeIQNHFDTCEAERKHADLQISELTRH 450
Cdd:pfam15921 216 RSLGSAISKILREL-------DTEISYLKGRIFPVEDQLEALKSESQNKIELL--LQQHQDRIEQLISEHEVEITGLTEK 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 451 AEDATKQAERYLSELQ--QSEALKEEA---------EKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNN 519
Cdd:pfam15921 287 ASSARSQANSIQSQLEiiQEQARNQNSmymrqlsdlESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERD 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 520 QILKEKDELKTQLYAALQQIENLRKELNdvLTKRalQEEELHSKEEKLRDIKSHqadLELEVKNSLDTIHRLESELKK-Q 598
Cdd:pfam15921 367 QFSQESGNLDDQLQKLLADLHKREKELS--LEKE--QNKRLWDRDTGNSITIDH---LRRELDDRNMEVQRLEALLKAmK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 599 SKIQSQMKVEKAHLEEEIAELKKSQAqdkakLLEMQESIKDLsairadlANKLAEEERAKKAVLKD----LSDLTAQAKS 674
Cdd:pfam15921 440 SECQGQMERQMAAIQGKNESLEKVSS-----LTAQLESTKEM-------LRKVVEELTAKKMTLESsertVSDLTASLQE 507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 675 RD---EETATIITQLKLERDVHQRELkdltsslQSVKTKHEqniqelmkHFKKEKSEAEnhirTLKAESLEEKNMAKIHR 751
Cdd:pfam15921 508 KEraiEATNAEITKLRSRVDLKLQEL-------QHLKNEGD--------HLRNVQTECE----ALKLQMAEKDKVIEILR 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 752 GQLEKLksqcdrlteelTQNENENKKLKLKYQCLKDQLEerekhisieeehlRRMEEARLQLKDQLLCLETEQESIlgvi 831
Cdd:pfam15921 569 QQIENM-----------TQLVGQHGRTAGAMQVEKAQLE-------------KEINDRRLELQEFKILKDKKDAKI---- 620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 832 gKEIDAackTFSKDSVEKLKVFSSGPDihydPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKES 911
Cdd:pfam15921 621 -RELEA---RVSDLELEKVKLVNAGSE----RLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMET 692
|
730
....*....|....*...
gi 166214932 912 ELQCLFQQIERQEQLLDE 929
Cdd:pfam15921 693 TTNKLKMQLKSAQSELEQ 710
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
177-623 |
4.79e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.08 E-value: 4.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 177 RLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEAL 256
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 257 KKQEAKADEHEGAIKNK-----------LRQTETEKNQLEQEL-ELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRK 324
Cdd:COG4717 130 LYQELEALEAELAELPErleeleerleeLRELEEELEELEAELaELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 325 GLQHQVSQIsKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVqlnFSAMASELEEVKRCMERKDKEKAHLASQVEN 404
Cdd:COG4717 210 ELEEELEEA-QEELEELEEELEQLENELEAAALEERLKEARLLLLI---AAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 405 LTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 484
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 485 KAQESIRQWKLKHKKLE-----RALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQI--ENLRKELNDVLTKRALQE 557
Cdd:COG4717 366 EELEQEIAALLAEAGVEdeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELE 445
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 166214932 558 EELHSKEEKLRDIKSHQADLELEVKNS--LDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQ 623
Cdd:COG4717 446 EELEELREELAELEAELEQLEEDGELAelLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
532-748 |
5.61e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 5.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 532 LYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAH 611
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 612 LEEEIAELK-----------KSQAQDKAKLLEMQESIKDLsAIRADLANKLAEEERAK----KAVLKDLSDLTAQAKSRD 676
Cdd:COG4942 95 LRAELEAQKeelaellralyRLGRQPPLALLLSPEDFLDA-VRRLQYLKYLAPARREQaeelRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 166214932 677 EETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELmKHFKKEKSEAENHIRTLKAESLEEKNMAK 748
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL-AELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
153-411 |
6.26e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 6.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMR 232
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 233 TERELVERRQDQLGlmslQLQEALKKQEAKADEHEgaikNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEEL 312
Cdd:TIGR02168 800 ALREALDELRAELT----LLNEEAANLRERLESLE----RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 313 RTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQL--------NFSAMASE---- 380
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLeglevridNLQERLSEeysl 951
|
250 260 270
....*....|....*....|....*....|..
gi 166214932 381 -LEEVKRCMERKDKEKAHLASQVENLTRELEN 411
Cdd:TIGR02168 952 tLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
198-706 |
7.59e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.72 E-value: 7.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 198 RALEELTEKLNEAQKQEVVSDRVERRLQELER--------------EMRTEREL---VERRQDQLGLMSLQLQEALKKQE 260
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKkhqqlceeknalqeQLQAETELcaeAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 261 AKADEHEgaikNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQ--- 337
Cdd:pfam01576 82 SRLEEEE----ERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERkll 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 338 ----SNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMA-SELEEVKRCMERKDKEK----AHLASQVENLTRE 408
Cdd:pfam01576 158 eeriSEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrQELEKAKRKLEGESTDLqeqiAELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 409 LENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEdaTKQAERYLSElQQSEALKEEAEKRREDLKLKAQE 488
Cdd:pfam01576 238 LAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLE--SERAARNKAE-KQRRDLGEELEALKTELEDTLDT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 489 SIRQWKLKHKK------LERALE---------------KQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELN 547
Cdd:pfam01576 315 TAAQQELRSKReqevteLKKALEeetrsheaqlqemrqKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELR 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 548 DVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELkKSQAQDK 627
Cdd:pfam01576 395 TLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSL-ESQLQDT 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 628 AKLLE--------MQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQ---AKSRDEETATIITQLKLERDVHQRE 696
Cdd:pfam01576 474 QELLQeetrqklnLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQlsdMKKKLEEDAGTLEALEEGKKRLQRE 553
|
570
....*....|
gi 166214932 697 LKDLTSSLQS 706
Cdd:pfam01576 554 LEALTQQLEE 563
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
753-959 |
1.03e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 1.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 753 QLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIG 832
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 833 KEIDAACKTfSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESE 912
Cdd:COG4942 108 ELLRALYRL-GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 166214932 913 LQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALE 959
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
142-414 |
1.18e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 142 RMRSRTGVRFVQETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLN----EAQKQEVVS 217
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTllneEAANLRERL 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAiKNKLRQTETEKNQLEQELELSRRLLNQ 297
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-LNERASLEEALALLRSELEELSEELRE 905
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 298 SEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN-YQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQL---- 372
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENKIEDDEEEARRRLKRLENKIkelg 985
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 166214932 373 --NFSAMAsELEEVKrcmERKDkekaHLASQVENLTRELENGEK 414
Cdd:TIGR02168 986 pvNLAAIE-EYEELK---ERYD----FLTAQKEDLTEAKETLEE 1021
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
184-948 |
1.26e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.95 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 184 RELSRRSRSDAETKRALEEL----TEKLNEAQKQEVvsdRVERRLQELE---REMRTERELVERRQDQLGLMSLQLQEAL 256
Cdd:pfam01576 29 KELEKKHQQLCEEKNALQEQlqaeTELCAEAEEMRA---RLAARKQELEeilHELESRLEEEEERSQQLQNEKKKMQQHI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 257 KKQEAKADEHEGAiKNKLR----QTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQ 332
Cdd:pfam01576 106 QDLEEQLDEEEAA-RQKLQlekvTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNK 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 333 ISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENG 412
Cdd:pfam01576 185 HEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQI--AELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNA 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 413 EKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQ 492
Cdd:pfam01576 263 LKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRS 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 493 WKLKHKKLEralEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKS 572
Cdd:pfam01576 343 HEAQLQEMR---QKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQA 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 573 HQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKkSQAQDKAKLLE--------MQESIKDLSAIR 644
Cdd:pfam01576 420 RLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLE-SQLQDTQELLQeetrqklnLSTRLRQLEDER 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 645 ADLANKLAEEERAKKAVLKDLSDLTAQ---AKSRDEETATIITQLKLERDVHQRELKDLTSSLqsvktkheqniqelmkh 721
Cdd:pfam01576 499 NSLQEQLEEEEEAKRNVERQLSTLQAQlsdMKKKLEEDAGTLEALEEGKKRLQRELEALTQQL----------------- 561
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 722 fkKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLE----EREKHIS 797
Cdd:pfam01576 562 --EEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEaearEKETRAL 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 798 IEEEHLRRMEEARLQLKDQLLCLETEQESILgvigkeidaACKTFSKDSVEKLKVFSSGPDihydphRWLAESKTKLQWL 877
Cdd:pfam01576 640 SLARALEEALEAKEELERTNKQLRAEMEDLV---------SSKDDVGKNVHELERSKRALE------QQVEEMKTQLEEL 704
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 166214932 878 CEELKERENREKNLrhqlmlcrqqlrnltenkESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEM 948
Cdd:pfam01576 705 EDELQATEDAKLRL------------------EVNMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEAE 757
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
201-772 |
2.35e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.11 E-value: 2.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 201 EELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGaIKNKLRQTETE 280
Cdd:pfam05483 233 KEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELED-IKMSLQRSMST 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 281 KNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQIskqqsnyqdeqgedwrfrrgVEREKQD 360
Cdd:pfam05483 312 QKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEEL--------------------LRTEQQR 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 361 LEKQMSDLRV-QLNFSAMASELEEVKRCMERKDKEKAHLAS---QVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAE 436
Cdd:pfam05483 372 LEKNEDQLKIiTMELQKKSSELEEMTKFKNNKEVELEELKKilaEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 437 RKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwklkHKKLERALEKQSETVDELTG 516
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQE----ASDMTLELKKHQEDIINCKK 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 517 KNNQILKEKDELKTQLYAALQQIENLRKELndvLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELK 596
Cdd:pfam05483 528 QEERMLKQIENLEEKEMNLRDELESVREEF---IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIE 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 597 KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRD 676
Cdd:pfam05483 605 NKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIA 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 677 EETATIITQLKLErdvHQRELKDLTSSLQSVKTKHEQNIQE------LMKHFKKEKSEA----ENHIRTLKAESLEEKNM 746
Cdd:pfam05483 685 DEAVKLQKEIDKR---CQHKIAEMVALMEKHKHQYDKIIEErdselgLYKNKEQEQSSAkaalEIELSNIKAELLSLKKQ 761
|
570 580
....*....|....*....|....*.
gi 166214932 747 AKIHRGQLEKLKSQCDRLTEELTQNE 772
Cdd:pfam05483 762 LEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
156-369 |
2.54e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 156 DDMTQLHGFHQSLRDLSsEQIRLgddfnreLSRRSRSDAETKRALEELTEklNEAQKQEVVSDRVERRLQELEREMRTER 235
Cdd:COG4913 232 EHFDDLERAHEALEDAR-EQIEL-------LEPIRELAERYAAARERLAE--LEYLRAALRLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 236 ELVERRQDQLglmslqlqEALKKQEAKADEHEGAIKNKLRQTETE-KNQLEQELELSRRLLNQSEGSRETLLHQVEELRT 314
Cdd:COG4913 302 AELARLEAEL--------ERLEARLDALREELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 166214932 315 QLTKAEGD----RKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLR 369
Cdd:COG4913 374 PLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
451-681 |
3.90e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 3.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 451 AEDATKQAERYLSELQQSealKEEAEKRREDLKLKAQESIRQwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKT 530
Cdd:COG4942 18 QADAAAEAEAELEQLQQE---IAELEKELAALKKEEKALLKQ----LAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 531 QLYAALQQIENLRKELNDVLtkRALQEEELHSKEE----------------KLRDIKSHQADLELEVKNSLDTIHRLESE 594
Cdd:COG4942 91 EIAELRAELEAQKEELAELL--RALYRLGRQPPLAlllspedfldavrrlqYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 595 LKKQSKIQSQMKVEkahLEEEIAELKKSQAqdkakllEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKS 674
Cdd:COG4942 169 LEAERAELEALLAE---LEEERAALEALKA-------ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 166214932 675 RDEETAT 681
Cdd:COG4942 239 AAERTPA 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
389-794 |
5.29e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.62 E-value: 5.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 389 ERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADL--QISELTRHAEDATKQAERYLSELQ 466
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 467 QSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKEL 546
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 547 NDVLTKRALQEEELHSKEE----KLRDIKSHQADLELEVKNSLDTI---------------HRLESELKKQSKIQSQMKV 607
Cdd:COG4717 237 EAAALEERLKEARLLLLIAaallALLGLGGSLLSLILTIAGVLFLVlgllallflllarekASLGKEAEELQALPALEEL 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANklAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLK 687
Cdd:COG4717 317 EEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE--LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 688 LERDVHQRELKDLTSSLQSvktkHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEknmakihrgQLEKLKSQCDRLTEE 767
Cdd:COG4717 395 EEYQELKEELEELEEQLEE----LLGELEELLEALDEEELEEELEELEEELEELEE---------ELEELREELAELEAE 461
|
410 420
....*....|....*....|....*....
gi 166214932 768 LTQNENENK--KLKLKYQCLKDQLEEREK 794
Cdd:COG4717 462 LEQLEEDGElaELLQELEELKAELRELAE 490
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
170-677 |
6.81e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 53.75 E-value: 6.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 170 DLSSEQIRLgDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGlMS 249
Cdd:PRK01156 191 KLKSSNLEL-ENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS-ME 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 250 LQLQEALKKQEAKADEHEG----AIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETL--LHQVEELRTQLTKAEGDR 323
Cdd:PRK01156 269 LEKNNYYKELEERHMKIINdpvyKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIkkLSVLQKDYNDYIKKKSRY 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 324 KGLQHQVSQISKQQSNYQD-----EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHL 398
Cdd:PRK01156 349 DDLNNQILELEGYEMDYNSylksiESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 399 ASQVENLtRELENGEKQQLQML---------------DRLKEIQNHFDT----CEAERKHADLQISELTRHAEDATKQAE 459
Cdd:PRK01156 429 NQRIRAL-RENLDELSRNMEMLngqsvcpvcgttlgeEKSNHIINHYNEkksrLEEKIREIEIEVKDIDEKIVDLKKRKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 460 RYLS-ELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEK-QSETVDELTGKNnqilkeKDELKTQLYAALQ 537
Cdd:PRK01156 508 YLESeEINKSINEYNKIESARADLE-DIKIKINELKDKHDKYEEIKNRyKSLKLEDLDSKR------TSWLNALAVISLI 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 538 QIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIA 617
Cdd:PRK01156 581 DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIA 660
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 166214932 618 ELK---KSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE 677
Cdd:PRK01156 661 EIDsiiPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
240-570 |
7.03e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 7.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 240 RRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSE-----GSRETLLHQVEELRT 314
Cdd:COG4913 599 RSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWdeidvASAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 315 QLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKE 394
Cdd:COG4913 679 RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 395 --KAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFdtceaeRKHADLQISELTRHAEDatkqAERYLSELQQseaLK 472
Cdd:COG4913 759 lgDAVERELRENLEERIDALRARLNRAEEELERAMRAF------NREWPAETADLDADLES----LPEYLALLDR---LE 825
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 473 EE--AEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELtgknNQILKEKD---------ELKTQLYAALQQien 541
Cdd:COG4913 826 EDglPEYEERFKELLNENSIEFVADLLSKLRRAIREIKERIDPL----NDSLKRIPfgpgrylrlEARPRPDPEVRE--- 898
|
330 340 350
....*....|....*....|....*....|
gi 166214932 542 LRKELNDVLTKRALQEEELH-SKEEKLRDI 570
Cdd:COG4913 899 FRQELRAVTSGASLFDEELSeARFAALKRL 928
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
209-751 |
9.28e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 9.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 209 EAQKQEVVSDRVERRLQELEREMRTERELVERRQDQlglmSLQLQEALKKQEAKADEHEgaiknklrQTETEKNQLEQEL 288
Cdd:PRK02224 193 KAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQ----REQARETRDEADEVLEEHE--------ERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 289 ELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEdwrfrrgVEREKQDLEKQMSDL 368
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE-------LEDRDEELRDRLEEC 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 369 RVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELT 448
Cdd:PRK02224 334 RVAA--QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 449 RHAEDATKQAERYLSELQQSEA-LKEEAEKRREDLKLKAQ----------------ESIRQWKLKHKKLERALEKQSETV 511
Cdd:PRK02224 412 DFLEELREERDELREREAELEAtLRTARERVEEAEALLEAgkcpecgqpvegsphvETIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 512 DEltgknnqiLKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRL 591
Cdd:PRK02224 492 EE--------VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 592 ESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDkAKLLEMQESIKDLSAIRADLA-------NKLAE--------EER 656
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERIESLERIRTLL-AAIADAEDEIERLREKREALAelnderrERLAEkrerkrelEAE 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 657 AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKT-----KHEQNIQELMKHFKKEKSEAEN 731
Cdd:PRK02224 643 FDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEElrerrEALENRVEALEALYDEAEELES 722
|
570 580
....*....|....*....|
gi 166214932 732 HIRTLKAEsLEEKNMAKIHR 751
Cdd:PRK02224 723 MYGDLRAE-LRQRNVETLER 741
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
176-578 |
9.77e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 9.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 176 IRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMslqlQEA 255
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK----EEL 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 256 LKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTK--------AEGDRKGLq 327
Cdd:PRK03918 375 ERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKEL- 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 328 hqVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTR 407
Cdd:PRK03918 454 --LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 408 ELENGEKQQLQMLD-----------RLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLS-------ELQQSE 469
Cdd:PRK03918 532 EKLIKLKGEIKSLKkelekleelkkKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpfyneylELKDAE 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 470 ALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE-----TVDELTGKNNQILKEKDELKtQLYAALQQIENLRK 544
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEElekkySEEEYEELREEYLELSRELA-GLRAELEELEKRRE 690
|
410 420 430
....*....|....*....|....*....|....
gi 166214932 545 ELNDVLTKRALQEEELHSKEEKLRDIKSHQADLE 578
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
450-674 |
1.22e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 450 HAEDATKQAErylSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELK 529
Cdd:COG3883 13 FADPQIQAKQ---KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 530 TQLyAALQQIENLRKELNDVLTKRALQEeeLHSKEEKLRDIKSHQADLelevknsldtIHRLESELKKQSKIQSQMKVEK 609
Cdd:COG3883 90 ERA-RALYRSGGSVSYLDVLLGSESFSD--FLDRLSALSKIADADADL----------LEELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 166214932 610 AHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKS 674
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
486-680 |
1.91e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 486 AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEE 565
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL---GE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 566 KLRDIKSHQADLE-----LEVKNSLDTIHRLE----------SELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKL 630
Cdd:COG3883 91 RARALYRSGGSVSyldvlLGSESFSDFLDRLSalskiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 166214932 631 LEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETA 680
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
252-470 |
2.27e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.94 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 252 LQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELE--LSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQ 329
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 330 VSQISKQQSNYQDEQGEDWRFR--RGVEREKQDLEKQMSDLRVQL--NFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSARYtpNHPDVIALRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 166214932 406 TRELENGEKQQLQMLDRLKEIQNHFDTCEAErkhadlqISELTRHAEDATKQAERYLSELQQSEA 470
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAE-------LRRLEREVEVARELYESLLQRLEEARL 379
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
276-976 |
2.33e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.97 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 276 QTETEKNQLEQELELSRRLLNQSEGSRETLlHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRfrrGVE 355
Cdd:TIGR00606 225 QITSKEAQLESSREIVKSYENELDPLKNRL-KEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQ---GTD 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 356 REKQDLE--KQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTC 433
Cdd:TIGR00606 301 EQLNDLYhnHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 434 EAER-----KHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQS 508
Cdd:TIGR00606 381 GFERgpfseRQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVI 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 509 ETVDELTGKNNQILKEKDELKTQLY------------AALQQIENLRKELNDVLTKRALQEEELH--------------- 561
Cdd:TIGR00606 461 KELQQLEGSSDRILELDQELRKAERelskaeknslteTLKKEVKSLQNEKADLDRKLRKLDQEMEqlnhhtttrtqmeml 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 562 -----SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQES 636
Cdd:TIGR00606 541 tkdkmDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 637 IKDLSAIRADLANKLAEE---ERAKKAVLKDLSDLtAQAKSRDEETATIITQLKLERD----VHQRELKDltsslqsvkt 709
Cdd:TIGR00606 621 LSSYEDKLFDVCGSQDEEsdlERLKEEIEKSSKQR-AMLAGATAVYSQFITQLTDENQsccpVCQRVFQT---------- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 710 khEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQL 789
Cdd:TIGR00606 690 --EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDI 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 790 EEREKHIsieeEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAE 869
Cdd:TIGR00606 768 EEQETLL----GTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVS 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 870 SKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMG 949
Cdd:TIGR00606 844 KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQ 923
|
730 740
....*....|....*....|....*..
gi 166214932 950 SLQDRVIALETSTQVALDHLESVPEKL 976
Cdd:TIGR00606 924 EKEELISSKETSNKKAQDKVNDIKEKV 950
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
463-981 |
2.68e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 463 SELQQSEALKEEAEKRREDLKLKAQEsirqwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENL 542
Cdd:PRK02224 220 EEIERYEEQREQARETRDEADEVLEE--------HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEEL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 543 RKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKS 622
Cdd:PRK02224 292 EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 623 QAQDKAKLLEMQESIKDLsairadlanklaEEErakkavLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS 702
Cdd:PRK02224 372 LEEAREAVEDRREEIEEL------------EEE------IEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 703 SLQSVKTKHEQNiQELMKHFK----KEKSEAENHIRTL-----KAESLEEknmakihrgQLEKLKSQCDRLTEELTQNEn 773
Cdd:PRK02224 434 TLRTARERVEEA-EALLEAGKcpecGQPVEGSPHVETIeedreRVEELEA---------ELEDLEEEVEEVEERLERAE- 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 774 ENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQEsilgviGKEIDAACKTFSKDSV-EKLKV 852
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE------EKREAAAEAEEEAEEArEEVAE 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 853 FSSGpdihydphrwLAESKTKLQWLcEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLLDEIH- 931
Cdd:PRK02224 577 LNSK----------LAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDe 645
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 166214932 932 ------REKRDLLEE--------TQRKDEEMGSLQDRVIALETStqvaLDHLESVPEKLSLLED 981
Cdd:PRK02224 646 arieeaREDKERAEEyleqveekLDELREERDDLQAEIGAVENE----LEELEELRERREALEN 705
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
451-825 |
2.77e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 451 AEDATKQAERYLSELQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSetVDELTGKNNQILKEKDELKT 530
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEEL----EAELEELREELEKLEKLLQLLP--LYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 531 QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQ-ADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEK 609
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 610 AHLEEEIAELKKSQAQDKAKLL----------------------EMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSD 667
Cdd:COG4717 230 EQLENELEAAALEERLKEARLLlliaaallallglggsllslilTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 668 LTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQnIQELMKHFKKEKSEAENH--IRTLKAESLEEKN 745
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE-AEELEEELQLEELEQEIAalLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 746 MAKIHRGQLEKLKSQCDRLTEELTQNENENKKL--KLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETE 823
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGELEELleALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
..
gi 166214932 824 QE 825
Cdd:COG4717 469 GE 470
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
200-725 |
4.54e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 200 LEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTET 279
Cdd:COG4913 237 LERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 280 EKNQLEQELELSRRLLNQSEGSR-ETLLHQVEELRTQLTKAEGDRKGLQHQVSQIskqQSNYQDEQGEDWRFRRGVEREK 358
Cdd:COG4913 317 RLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAAL---GLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 359 QDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRELengekqqLQMLDRLkeiqnhfdtCEAERK 438
Cdd:COG4913 394 EALEEELEALEEAL--AEAEAALRDLRRELRELEAEIASLERRKSNIPARL-------LALRDAL---------AEALGL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 439 HAD--------LQISELTRHAEDAtkqAERYLS----------------------------------ELQQSEALKEEAE 476
Cdd:COG4913 456 DEAelpfvgelIEVRPEEERWRGA---IERVLGgfaltllvppehyaaalrwvnrlhlrgrlvyervRTGLPDPERPRLD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 477 KRREDLKLKAQES-IRQWklkhkkLERALEKQS-----ETVDELTG-----------KNNQILKEKD---ELKTQLY--- 533
Cdd:COG4913 533 PDSLAGKLDFKPHpFRAW------LEAELGRRFdyvcvDSPEELRRhpraitragqvKGNGTRHEKDdrrRIRSRYVlgf 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 534 ---AALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADL------ELEVKNSLDTIHRLESELKkqskiqsq 604
Cdd:COG4913 607 dnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLaeyswdEIDVASAEREIAELEAELE-------- 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 605 mKVEKAHleEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIIT 684
Cdd:COG4913 679 -RLDASS--DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 166214932 685 QLKLERDVHQRELKDLTSSLQSVKTK---HEQNIQELMKHFKKE 725
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALRARlnrAEEELERAMRAFNRE 799
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
165-449 |
4.90e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 4.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 165 HQSLRDLSSEQIRLGDDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRT-ERELVERRQD 243
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlEARLSHSRIP 794
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 244 QLGLMSLQLQEALKKQEAKADEHEGAIKNKlrqtETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDR 323
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIEARLREIEQKLNRL----TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 324 KGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLN-----FSAMASELEEVKRCMERKDKEKAHL 398
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSelkakLEALEEELSEIEDPKGEDEEIPEEE 950
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 166214932 399 AS------QVENLTRELENGE-------KQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTR 449
Cdd:TIGR02169 951 LSledvqaELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
185-476 |
5.12e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.51 E-value: 5.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 185 ELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELvERRQdqlglmslqlQEALKKQEAKAD 264
Cdd:pfam17380 328 EMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMREL-ERLQ----------MERQQKNERVRQ 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 265 EHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQqsnyqdeq 344
Cdd:pfam17380 397 ELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ-------- 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 345 gEDWRFRRGVEREKQDLEKQMSDlrvQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLK 424
Cdd:pfam17380 469 -EEERKRKKLELEKEKRDRKRAE---EQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRK 544
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 166214932 425 EIQNHfdtcEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAE 476
Cdd:pfam17380 545 QQEME----ERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
452-629 |
7.45e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.78 E-value: 7.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 452 EDATKQAERYlSELQQSEAlKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDEltgKNNQILKEKDELKtq 531
Cdd:PRK12704 45 EEAKKEAEAI-KKEALLEA-KEEIHKLRNEF----EKELRERRNELQKLEKRLLQKEENLDR---KLELLEKREEELE-- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 532 lyaalQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADlelEVKNSLdtIHRLESELKKqskiqsqmkvEKAH 611
Cdd:PRK12704 114 -----KKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE---EAKEIL--LEKVEEEARH----------EAAV 173
|
170
....*....|....*...
gi 166214932 612 LEEEIAELKKSQAQDKAK 629
Cdd:PRK12704 174 LIKEIEEEAKEEADKKAK 191
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
271-948 |
8.35e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 8.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 271 KNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRF 350
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 351 RRGVErEKQDLEKQMSDLRVQLNFS----AMASELEEVKRCMERKDKEKAHLASQVENLTREL---ENGEKQQLQMLDRL 423
Cdd:TIGR00618 266 RARIE-ELRAQEAVLEETQERINRArkaaPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLmkrAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 424 KEIQNHFDTCEAERKHADLQISELtrhaedatKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERA 503
Cdd:TIGR00618 345 RLLQTLHSQEIHIRDAHEVATSIR--------EISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 504 LEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEElhSKEEKLRDIKSHQADLELEVKN 583
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE--QQLQTKEQIHLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 584 SLDTIHRLESELKKQSKIQSQmkveKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLK 663
Cdd:TIGR00618 495 RLLELQEEPCPLCGSCIHPNP----ARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 664 DLSDLTAQAKSRDEETATIITQLKLERDVHQRELKD-----LTSSLQSVKTKHEQNIQELMKH---FKKEKSEAENHIRT 735
Cdd:TIGR00618 571 SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAedmlaCEQHALLRKLQPEQDLQDVRLHlqqCSQELALKLTALHA 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 736 LKAESLEEKnmakihrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKD 815
Cdd:TIGR00618 651 LQLTLTQER--------VREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 816 QLLCLETE------QESILGVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREK 889
Cdd:TIGR00618 723 IENASSSLgsdlaaREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK 802
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 166214932 890 NLRHQLMLCR---QQLRNLT-ENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEM 948
Cdd:TIGR00618 803 TLEAEIGQEIpsdEDILNLQcETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLT 865
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
172-796 |
9.40e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 9.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 172 SSEQIRLGDDFNRELSRRSRSDAETKRALEELT---EKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLM 248
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLKKQQLLKQLRARIEELRaqeAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKM 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 249 SLQLQEALKKQEAKADEHEGAIKNKLRQT---ETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKG 325
Cdd:TIGR00618 321 RSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCK 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 326 ----LQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMAselEEVKRCMERKDKEKAHLASQ 401
Cdd:TIGR00618 401 eldiLQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE---KIHLQESAQSLKEREQQLQT 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 402 VENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISE---LTRHAEDATKQAERYLSELQQSEALKEEAEKR 478
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNpgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQ 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 479 REDLKLKAQEsIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRAlqee 558
Cdd:TIGR00618 558 RASLKEQMQE-IQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRL---- 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 559 ELHSKEEKLRDIKSHQADLELEVKNSLDTIH-RLESELKKQSKIQSQMKVEKA-HLEEEIAELKKSQAQDKAKLLEMQES 636
Cdd:TIGR00618 633 HLQQCSQELALKLTALHALQLTLTQERVREHaLSIRVLPKELLASRQLALQKMqSEKEQLTYWKEMLAQCQTLLRELETH 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 637 IKDLSAIRADLANKLAeeerAKKAVLKDLSDLTAQAKSRDEETATiiTQLKLERDVHQRELKDLTSSLQSVKTKHE---- 712
Cdd:TIGR00618 713 IEEYDREFNEIENASS----SLGSDLAAREDALNQSLKELMHQAR--TVLKARTEAHFNNNEEVTAALQTGAELSHlaae 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 713 -QNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIhrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEE 791
Cdd:TIGR00618 787 iQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCE---TLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQ 863
|
....*
gi 166214932 792 REKHI 796
Cdd:TIGR00618 864 LTQEQ 868
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
434-769 |
9.70e-06 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 49.57 E-value: 9.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 434 EAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKlkaqESIRQWKLKHKKLERALEKQSETVDE 513
Cdd:COG5185 193 SELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPE----SELEDLAQTSDKLEKLVEQNTDLRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 514 LTGKNNQILKEKDELKTQLyaaLQQIENLRKELNDVlTKRALQEEELHSKEEKLR--DIKSHQADLELEVKNSLDtihRL 591
Cdd:COG5185 269 KLGENAESSKRLNENANNL---IKQFENTKEKIAEY-TKSIDIKKATESLEEQLAaaEAEQELEESKRETETGIQ---NL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 592 ESELKK-QSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQesikdLSAIRADLANKLAEEERAKKAVLKDLSDLTA 670
Cdd:COG5185 342 TAEIEQgQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDT-----IESTKESLDEIPQNQRGYAQEILATLEDTLK 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 671 QAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTK---------------HEQNIQELMKHFKKEKSEAENHIRT 735
Cdd:COG5185 417 AADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREadeesqsrleeaydeINRSVRSKKEDLNEELTQIESRVST 496
|
330 340 350
....*....|....*....|....*....|....
gi 166214932 736 LKAEslEEKNMAKIHRgQLEKLKSQCDRLTEELT 769
Cdd:COG5185 497 LKAT--LEKLRAKLER-QLEGVRSKLDQVAESLK 527
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
418-647 |
1.04e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 418 QMLDRLKEIQNHFDTceaerkhadlqISELTRHAEDATKQAERyLSELQQSEALKEEAEKRREDLK--------LKAQES 489
Cdd:COG4913 222 DTFEAADALVEHFDD-----------LERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEylraalrlWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 490 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAA--------LQQIENLRKELNDVLTKRALQEEELH 561
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 562 SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQ----SKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESI 637
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAlaeaEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
250
....*....|.
gi 166214932 638 KD-LSAIRADL 647
Cdd:COG4913 450 AEaLGLDEAEL 460
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
439-681 |
1.07e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 439 HADLQISELTRHAEDATKQAERYLSEL----QQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVDEL 514
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELdalqAELEELNEEYNELQAELE-ALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 515 ------TGKNNQIL------KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVK 582
Cdd:COG3883 92 aralyrSGGSVSYLdvllgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 583 NsldtihrLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVL 662
Cdd:COG3883 172 E-------LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
250
....*....|....*....
gi 166214932 663 KDLSDLTAQAKSRDEETAT 681
Cdd:COG3883 245 SAAGAGAAGAAGAAAGSAG 263
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
218-576 |
1.09e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLR---QTETEKNQLEQELELSRRL 294
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRlfdEKQSEKDKKNKALAERKDS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 295 LNQsegsretllhqveelrtQLTKAEGDRKGLQHQVSQISKQQSNYQDE-QGEDWRFRRGVEREKQDLEKQMSDLRVQLn 373
Cdd:pfam12128 680 ANE-----------------RLNSLEAQLKQLDKKHQAWLEEQKEQKREaRTEKQAYWQVVEGALDAQLALLKAAIAAR- 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 374 FSAMASELEEVKRCMERKDKEK-------AHLASQVENLTRELENGEKQQLQMLdRLKEIQNHfdTCEAERKHADLQISE 446
Cdd:pfam12128 742 RSGAKAELKALETWYKRDLASLgvdpdviAKLKREIRTLERKIERIAVRRQEVL-RYFDWYQE--TWLQRRPRLATQLSN 818
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 447 LTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQseTVDELTGKNNQILKEKD 526
Cdd:pfam12128 819 IERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDA--NSEQAQGSIGERLAQLE 896
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 166214932 527 ELKTQLYAALQQIENLRKELNDVLTKraLQEEELHSKEEKLRDIKSHQAD 576
Cdd:pfam12128 897 DLKLKRDYLSESVKKYVEHFKNVIAD--HSGSGLAETWESLREEDHYQND 944
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
192-952 |
1.34e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 192 SDAETKRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIK 271
Cdd:TIGR00606 235 SSREIVKSYENELDPLKNRLKE---IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQ 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 272 NKLRQTETEKNQLEQELE---LSRRLLNQSEGSRET----LLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQ 344
Cdd:TIGR00606 312 RTVREKERELVDCQRELEklnKERRLLNQEKTELLVeqgrLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQ 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 345 GEDWR--FRRGVEREKQDLEKQMSDLRVQLNFSA-MASELEEVKRCMERK-DKEKAHLASQVENLTRELENGEKQQLQMl 420
Cdd:TIGR00606 392 IKNFHtlVIERQEDEAKTAAQLCADLQSKERLKQeQADEIRDEKKGLGRTiELKKEILEKKQEELKFVIKELQQLEGSS- 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 421 DRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRqwKLKHKKL 500
Cdd:TIGR00606 471 DRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT--KDKMDKD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 501 ERALEKQSETVDELTGK-----NNQIL--------KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKL 567
Cdd:TIGR00606 549 EQIRKIKSRHSDELTSLlgyfpNKKQLedwlhsksKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 568 RDIKSHQAdleLEVKnsldtIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQA-------QDKAKLLEMQESIKDL 640
Cdd:TIGR00606 629 FDVCGSQD---EESD-----LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQsccpvcqRVFQTEAELQEFISDL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 641 SAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQ---RELKDLTSSLQSVKTKHEQNIQE 717
Cdd:TIGR00606 701 QSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQkvnRDIQRLKNDIEEQETLLGTIMPE 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 718 L------------MKHFKKEKSEAENHIRTLKAESleEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCL 785
Cdd:TIGR00606 781 EesakvcltdvtiMERFQMELKDVERKIAQQAAKL--QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQ 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 786 KDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVI--GKEIDAACKTFSKDSVEKLKVFSSGPDIHY-- 861
Cdd:TIGR00606 859 IQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIkdAKEQDSPLETFLEKDQQEKEELISSKETSNkk 938
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 862 -------------DPHRWLAESKTKLQWLCEE-LKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLL 927
Cdd:TIGR00606 939 aqdkvndikekvkNIHGYMKDIENKIQDGKDDyLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQ 1018
|
810 820 830
....*....|....*....|....*....|
gi 166214932 928 DEIHREKR-----DLLEETQRKDEEMGSLQ 952
Cdd:TIGR00606 1019 DNLTLRKRenelkEVEEELKQHLKEMGQMQ 1048
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
408-992 |
1.40e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 408 ELENGEKQQLQMLDrlKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSE-LQQSEALKEEAEKRREDLKLkA 486
Cdd:pfam12128 283 ETSAELNQLLRTLD--DQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPSWQSELEN-L 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 487 QESIRQWKLKHKKLERALEKQ-----SETVDELTGKNNQ---ILKEKDELKTQLYAALQQIEN-LRKELNDVLTKRALQE 557
Cdd:pfam12128 360 EERLKALTGKHQDVTAKYNRRrskikEQNNRDIAGIKDKlakIREARDRQLAVAEDDLQALESeLREQLEAGKLEFNEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 558 EELHSK--EEKLR-DIKSHQADLELEVKNSLDTIHRLESELKKQSKiqsqmKVEKAHLEEEIAELKKSQAQDK-----AK 629
Cdd:pfam12128 440 YRLKSRlgELKLRlNQATATPELLLQLENFDERIERAREEQEAANA-----EVERLQSELRQARKRRDQASEAlrqasRR 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 630 LLEMQESIKDLSAIRADLANKLAEEERAKKAVLK---------------DLSDLTAQAKSRDEETATIITqLKLER---- 690
Cdd:pfam12128 515 LEERQSALDELELQLFPQAGTLLHFLRKEAPDWEqsigkvispellhrtDLDPEVWDGSVGGELNLYGVK-LDLKRidvp 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 691 ------DVHQRELKDLTSSLQSVKTKHEQNIQELM---KHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEK----L 757
Cdd:pfam12128 594 ewaaseEELRERLDKAEEALQSAREKQAAAEEQLVqanGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKknkaL 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 758 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEArlQLKDQLLCLETEQESILGVIGKEIDA 837
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEG--ALDAQLALLKAAIAARRSGAKAELKA 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 838 aCKTFSKDSVEKLKVfssGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLF 917
Cdd:pfam12128 752 -LETWYKRDLASLGV---DPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQ 827
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 918 QQIERQEQ----LLDEIHREKRDLLEETQRKDEEMGSLQDRVIAL----ETSTQVALDHleSVPEKLSLLEDFKDFRDSC 989
Cdd:pfam12128 828 QQLARLIAdtklRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLatlkEDANSEQAQG--SIGERLAQLEDLKLKRDYL 905
|
...
gi 166214932 990 SSS 992
Cdd:pfam12128 906 SES 908
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
227-665 |
1.76e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 227 LEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAiknkLRQTETEKNQLEQELELSRRLLNQSEGSRETL- 305
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEE----YAELQEELEELEEELEELEAELEELREELEKLe 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 306 -LHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQM--SDLRVQLNFSAMASELE 382
Cdd:COG4717 123 kLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLeqLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 383 EVKRCMERKDKEKAHLASQVENLTRELENGEKQQL--QMLDRLKEIQNHFDT----CEAERKHADLQISELTRHAEDATK 456
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEaaALEERLKEARLLLLIaaalLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 457 QAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKhkKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAAL 536
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE--ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 537 QQ--IENLRKELNDVLTKRALQEEE----LHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELkkqskiqsqmkvEKA 610
Cdd:COG4717 361 EElqLEELEQEIAALLAEAGVEDEEelraALEQAEEYQELKEELEELEEQLEELLGELEELLEAL------------DEE 428
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 611 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLAN-----KLAEEERAKKAVLKDL 665
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgelaELLQELEELKAELREL 488
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
194-584 |
1.92e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 194 AETKRALEELtEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQdqlglMSLQLQEALKKQEAKADEHEGAIKNK 273
Cdd:PTZ00121 1530 AEEAKKADEA-KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKN-----MALRKAEEAKKAEEARIEEVMKLYEE 1603
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 274 LRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRG 353
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 354 VEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRlkeiqnhfdtc 433
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD----------- 1752
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 434 EAERKHADLQISELTRHAEDATKQAERYLSE--LQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETV 511
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEelDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAI 1832
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 166214932 512 DELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNS 584
Cdd:PTZ00121 1833 KEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNN 1905
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
527-682 |
2.76e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.84 E-value: 2.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 527 ELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELK--KQSKIQSQ 604
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvRNNKEYEA 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 166214932 605 MKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDL-SDLTAQAKSRDEETATI 682
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELeAELEELEAEREELAAKI 172
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
413-668 |
3.44e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 47.76 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 413 EKQQLQMLDR-------LKEIQNHFdtceAERKHADLQISELTRHAEDATKQAERY---LSELQQSeALKE------EAE 476
Cdd:COG0497 140 PDAQRELLDAfagleelLEEYREAY----RAWRALKKELEELRADEAERARELDLLrfqLEELEAA-ALQPgeeeelEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 477 KRR----EDLKLKAQESIRQwkLKH---------KKLERALEKQSETVDELtgknnqilkekDELKTQLYAALQQIENLR 543
Cdd:COG0497 215 RRRlsnaEKLREALQEALEA--LSGgeggaldllGQALRALERLAEYDPSL-----------AELAERLESALIELEEAA 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 544 KELNDVLTKRALQEEELHSKEEKLRDIKS----HQADLElEVknsLDTIHRLESELKKQSkiqsqmkvekaHLEEEIAEL 619
Cdd:COG0497 282 SELRRYLDSLEFDPERLEEVEERLALLRRlarkYGVTVE-EL---LAYAEELRAELAELE-----------NSDERLEEL 346
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 166214932 620 KKSQAQDKAKLLEMQEsikDLSAIRADLANKLAeeerakKAVLKDLSDL 668
Cdd:COG0497 347 EAELAEAEAELLEAAE---KLSAARKKAAKKLE------KAVTAELADL 386
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
180-675 |
4.21e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 180 DDFNRELSRRSRSDAETKRALEELTEKLNEAQKQevVSDRVERRLQELEREMRTERELVERRQDQLGlmslQLQEALKKQ 259
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRA----RLEALLAAL 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 260 EAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGsretllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN 339
Cdd:COG4913 372 GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA-------ALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 340 YQD-----------------------EQGEDWR-----------------------FRRGVEREKqdlekqmsdLRVQLN 373
Cdd:COG4913 445 LRDalaealgldeaelpfvgelievrPEEERWRgaiervlggfaltllvppehyaaALRWVNRLH---------LRGRLV 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 374 FsamaselEEVKRCMERKDKEKAHLASqvenLTRELENGEKQQLQMLDRlkEIQNHFD--TCEAER--KHADLQISE--L 447
Cdd:COG4913 516 Y-------ERVRTGLPDPERPRLDPDS----LAGKLDFKPHPFRAWLEA--ELGRRFDyvCVDSPEelRRHPRAITRagQ 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 448 TRHAEDA-TKQAERYLSELQQseaLKEEAEKRREDLKLKAQEsirqwklkhkkLERALEKQSETVDELTgknnqilKEKD 526
Cdd:COG4913 583 VKGNGTRhEKDDRRRIRSRYV---LGFDNRAKLAALEAELAE-----------LEEELAEAEERLEALE-------AELD 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 527 ELKTQLyAALQQIENLRKELNDVLTkralQEEELHSKEEKLRDIKSHQADL-ELEvknslDTIHRLESELKKQSKIQSQM 605
Cdd:COG4913 642 ALQERR-EALQRLAEYSWDEIDVAS----AEREIAELEAELERLDASSDDLaALE-----EQLEELEAELEELEEELDEL 711
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 606 KVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSR 675
Cdd:COG4913 712 KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRAR 781
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
210-814 |
5.24e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 5.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 210 AQKQEVvsDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKadEHEGAIKNKLRQTETEKNQLEQELE 289
Cdd:pfam12128 218 LNRQQV--EHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYK--SDETLIASRQEERQETSAELNQLLR 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 290 LSRRLLNQSegsretllhqVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfrrGVEREKQDLEkQMSDLR 369
Cdd:pfam12128 294 TLDDQWKEK----------RDELNGELSAADAAVAKDRSELEALEDQHGAFLDA---------DIETAAADQE-QLPSWQ 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 370 VQL-NFSAMASELEEVKRCMERK-DKEKAHLASQVENLTRELENGEKQQLQMLDRLK-EIQNHFDTCEAERKHadlQISE 446
Cdd:pfam12128 354 SELeNLEERLKALTGKHQDVTAKyNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLaVAEDDLQALESELRE---QLEA 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 447 LTRHAEDATKQAERYLSELQ--------------QSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVD 512
Cdd:pfam12128 431 GKLEFNEEEYRLKSRLGELKlrlnqatatpelllQLENFDERIERAREEQE-AANAEVERLQSELRQARKRRDQASEALR 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 513 ELTGKNNQILKEKDELKTQLYAALQQ-IENLRKELND-------VLTKRALQEEELH--------SKEEKLRDIKSH--- 573
Cdd:pfam12128 510 QASRRLEERQSALDELELQLFPQAGTlLHFLRKEAPDweqsigkVISPELLHRTDLDpevwdgsvGGELNLYGVKLDlkr 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 574 -----QADLELEVKNSLDtihRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLA 648
Cdd:pfam12128 590 idvpeWAASEEELRERLD---KAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEK 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 649 NKLAEE-ERAKKAVLKDLSDLTAQAK-----------SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQ 716
Cdd:pfam12128 667 DKKNKAlAERKDSANERLNSLEAQLKqldkkhqawleEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAK 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 717 ELMKHFKKEKSeaenhiRTLKAESLEEKNMAKIHRG--QLEKLKSQCDRLTEELTQNEN-ENKKLKLKYQCLKDQLEERE 793
Cdd:pfam12128 747 AELKALETWYK------RDLASLGVDPDVIAKLKREirTLERKIERIAVRRQEVLRYFDwYQETWLQRRPRLATQLSNIE 820
|
650 660
....*....|....*....|..
gi 166214932 794 KHIS-IEEEHLRRMEEARLQLK 814
Cdd:pfam12128 821 RAISeLQQQLARLIADTKLRRA 842
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
198-548 |
6.07e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 47.36 E-value: 6.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 198 RALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERElvERRQDQLGLMSLQL-QEALKK-----QEAKADEHEgaiK 271
Cdd:PRK10929 55 NWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERD--EPRSVPPNMSTDALeQEILQVssqllEKSRQAQQE---Q 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 272 NKLRQTETEKNQLEQELELSRRLLN------QSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISkqqSNYQDEQG 345
Cdd:PRK10929 130 DRAREISDSLSQLPQQQTEARRQLNeierrlQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLS---ANNRQELA 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 346 edwRFRRGV-EREKQDLEKQMSDLRVQLNFSAMaselEEVKRCMERKDKekahLASQVENL----------TRELENGEK 414
Cdd:PRK10929 207 ---RLRSELaKKRSQQLDAYLQALRNQLNSQRQ----REAERALESTEL----LAEQSGDLpksivaqfkiNRELSQALN 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 415 QQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDAT-------KQAERyLSELQQSEALKEEAEKRR------ED 481
Cdd:PRK10929 276 QQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNalgealrAQVAR-LPEMPKPQQLDTEMAQLRvqrlryED 354
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 166214932 482 LkLKAQESIRQWKLKH-----KKLERALEKQSETVDEL-----TGKNNQILkekdELkTQLYAALQQIENLRKELND 548
Cdd:PRK10929 355 L-LNKQPQLRQIRQADgqpltAEQNRILDAQLRTQRELlnsllSGGDTLIL----EL-TKLKVANSQLEDALKEVNE 425
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
153-644 |
6.12e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 6.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 153 QETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSRRSR---------SDAETKRALEELTEKLNEAQKQEVVSDRVERR 223
Cdd:TIGR00618 342 EQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHihtlqqqktTLTQKLQSLCKELDILQREQATIDTRTSAFRD 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 224 LQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQE-----LELSRRLLNQS 298
Cdd:TIGR00618 422 LQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQEtrkkaVVLARLLELQE 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 299 E---------------------GSRETLLHQVEELRTQLTKAEGDRKG-LQHQVSQISKQQSNYQDEQGEDWRFRRGVER 356
Cdd:TIGR00618 502 EpcplcgscihpnparqdidnpGPLTRRMQRGEQTYAQLETSEEDVYHqLTSERKQRASLKEQMQEIQQSFSILTQCDNR 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 357 EKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKahLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAE 436
Cdd:TIGR00618 582 SKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK--LQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQER 659
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 437 RKHADLQISELTRHAEDATKQAERYL-SELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELT 515
Cdd:TIGR00618 660 VREHALSIRVLPKELLASRQLALQKMqSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARED 739
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 516 GKNNQILKEKDELKTQLYA--------------ALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEV 581
Cdd:TIGR00618 740 ALNQSLKELMHQARTVLKArteahfnnneevtaALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDIL 819
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 166214932 582 KNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIR 644
Cdd:TIGR00618 820 NLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGIN 882
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
500-715 |
6.51e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.93 E-value: 6.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 500 LERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEEKLRDIKSHQADLEL 579
Cdd:PHA02562 193 IQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP---SAALNKLNTAAAKIKS 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 580 EVKnSLDTIHR--------------LESELKKQSKIQSQMKVekahLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRA 645
Cdd:PHA02562 270 KIE-QFQKVIKmyekggvcptctqqISEGPDRITKIKDKLKE----LQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKN 344
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 166214932 646 DLANK---LAEEERAKKAVLKDLSDLTAQAKSRDEETATIitqlklerdvhQRELKDLTSSLQS-VKTKHEQNI 715
Cdd:PHA02562 345 KISTNkqsLITLVDKAKKVKAAIEELQAEFVDNAEELAKL-----------QDELDKIVKTKSElVKEKYHRGI 407
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
180-808 |
6.58e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 6.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 180 DDFNRELSRRSRSDAET-KRALEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEAlkk 258
Cdd:TIGR00606 393 KNFHTLVIERQEDEAKTaAQLCADLQSKERLKQEQ---ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL--- 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 259 qeakadehEGAIKNKLrqteteknQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRK---------GLQHQ 329
Cdd:TIGR00606 467 --------EGSSDRIL--------ELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKlrkldqemeQLNHH 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 330 VSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDL----RVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENL 405
Cdd:TIGR00606 531 TTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHI 610
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 406 TRELENGEKQQLQMLDRLkeiqnhFDTCEAERKHADLQisELTRHAEDATKQ-------AERYLSELQQSEALKE----- 473
Cdd:TIGR00606 611 NNELESKEEQLSSYEDKL------FDVCGSQDEESDLE--RLKEEIEKSSKQramlagaTAVYSQFITQLTDENQsccpv 682
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 474 -----EAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELND 548
Cdd:TIGR00606 683 cqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR 762
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 549 VLTKRALQEEELHSKEEKLRDIKSHQADLELevknsldtIHRLESELKKQSKiqsqmKVEKAHLEEEIAELKKSQAQDKA 628
Cdd:TIGR00606 763 LKNDIEEQETLLGTIMPEEESAKVCLTDVTI--------MERFQMELKDVER-----KIAQQAAKLQGSDLDRTVQQVNQ 829
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 629 KLLEMQESIKDLSAiRADLANKLAEEERAKKAVLKD-----------LSDLTAQAKSRDEETATIITQLK-LERDVHQRe 696
Cdd:TIGR00606 830 EKQEKQHELDTVVS-KIELNRKLIQDQQEQIQHLKSktnelkseklqIGTNLQRRQQFEEQLVELSTEVQsLIREIKDA- 907
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 697 lKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESleeKNMAKIHRGQLEKLKSQCDRlteELTQNENENK 776
Cdd:TIGR00606 908 -KEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV---KNIHGYMKDIENKIQDGKDD---YLKQKETELN 980
|
650 660 670
....*....|....*....|....*....|..
gi 166214932 777 KLKLkyqclkdQLEEREKHISIEEEHLRRMEE 808
Cdd:TIGR00606 981 TVNA-------QLEECEKHQEKINEDMRLMRQ 1005
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
389-730 |
8.23e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 8.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 389 ERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQiSELTRhAEDATKQAERYLSELQQS 468
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAE-REIAE-LEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 469 EALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELND 548
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREN 770
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 549 VLTKRALQEEELHSKEEKLRDI-KSHQADLELEVKNSLDTIHRLESELKKQSKIQSQmkvEKAHLEEEIAELKKSQAQDK 627
Cdd:COG4913 771 LEERIDALRARLNRAEEELERAmRAFNREWPAETADLDADLESLPEYLALLDRLEED---GLPEYEERFKELLNENSIEF 847
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 628 akllemqesikdlsaiRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVH--QRELKDLTSSLQ 705
Cdd:COG4913 848 ----------------VADLLSKLRRAIREIKERIDPLNDSLKRIPFGPGRYLRLEARPRPDPEVRefRQELRAVTSGAS 911
|
330 340
....*....|....*....|....*....
gi 166214932 706 ----SVKTKHEQNIQELMKHFKKEKSEAE 730
Cdd:COG4913 912 lfdeELSEARFAALKRLIERLRSEEEESD 940
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
392-612 |
1.26e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 392 DKEKAHLASQVENLTRELENGEKQQLQMLDRLkeiQNHFDTCEAERKHADLQISELTRHAEDATKQAERYlselqqSEAL 471
Cdd:PHA02562 187 DMKIDHIQQQIKTYNKNIEEQRKKNGENIARK---QNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP------SAAL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 472 KEEAEKRredLKLKAQesIRQWKLKHKKLE---------RALEKQSETVDELTGKNNQILKEKDELKTQlYAALQQIEN- 541
Cdd:PHA02562 258 NKLNTAA---AKIKSK--IEQFQKVIKMYEkggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTA-IDELEEIMDe 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 166214932 542 ---LRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHL 612
Cdd:PHA02562 332 fneQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
210-458 |
1.47e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 210 AQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGlmslQLQEALKKQEAKadehegaiknkLRQTETEKNQLEQELE 289
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEK----ALLKQLAALERR-----------IAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 290 LSRRLLNQSEGSRETLLHQVEELRTQLTK--AEGDRKGLQHQVSQISKQQSNYQDEqgedwRFRRGVEREKQDLEKQMSD 367
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAEllRALYRLGRQPPLALLLSPEDFLDAV-----RRLQYLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 368 LRVQLNfsamasELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRL----KEIQNHFDTCEAERKHADLQ 443
Cdd:COG4942 155 LRADLA------ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLekelAELAAELAELQQEAEELEAL 228
|
250
....*....|....*
gi 166214932 444 ISELTRHAEDATKQA 458
Cdd:COG4942 229 IARLEAEAAAAAERT 243
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
355-712 |
1.60e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 355 EREKQDLEKQMSDLRVQlnfsamaSELEEVKRCMERKdkekahlasqvenltRELENGEKQQLQMLDRLKEIQNHFDTCE 434
Cdd:pfam17380 286 ERQQQEKFEKMEQERLR-------QEKEEKAREVERR---------------RKLEEAEKARQAEMDRQAAIYAEQERMA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 435 AERkhadlqiseltrhaedatkqaERYLSELQQSEALKEEAEKRREDLklkAQESIRQWKLKHKKLERAlEKQSETVDEL 514
Cdd:pfam17380 344 MER---------------------ERELERIRQEERKRELERIRQEEI---AMEISRMRELERLQMERQ-QKNERVRQEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 515 TGKNNQILKEKdELKTQLYAALQQIENLRKElndvlTKRALQEEELHSKEEKLRDIKSHQADlELEVKNSLDTIHRLESE 594
Cdd:pfam17380 399 EAARKVKILEE-ERQRKIQQQKVEMEQIRAE-----QEEARQREVRRLEEERAREMERVRLE-EQERQQQVERLRQQEEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 595 LKKQSKIQSQMKVEKAHLEEEIAE-LKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAK 673
Cdd:pfam17380 472 RKRKKLELEKEKRDRKRAEEQRRKiLEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER 551
|
330 340 350
....*....|....*....|....*....|....*....
gi 166214932 674 SRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHE 712
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
391-553 |
1.69e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.96 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 391 KDKEKAHLASQVENLTR--ELENGEKQQLQmlDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQS 468
Cdd:PRK09039 51 KDSALDRLNSQIAELADllSLERQGNQDLQ--DSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 469 EALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEkQSETVDEltGKNNQIlkekDELKTQLYAAL----QQIENLRK 544
Cdd:PRK09039 129 KQVSARALAQVELL----NQQIAALRRQLAALEAALD-ASEKRDR--ESQAKI----ADLGRRLNVALaqrvQELNRYRS 197
|
170
....*....|...
gi 166214932 545 E----LNDVLTKR 553
Cdd:PRK09039 198 EffgrLREILGDR 210
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-415 |
1.70e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 180 DDFNRELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQ 259
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 260 EAkadehegAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSN 339
Cdd:COG4942 103 KE-------ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 166214932 340 YQDEQGEdwrfrrgVEREKQDLEKQMSDLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQ 415
Cdd:COG4942 176 LEALLAE-------LEEERAALEALKAERQKLLA--RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
490-700 |
2.27e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 490 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT-----QLYAALQQIENLRKELNDVLTKRALQ--EEELHS 562
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDDLERAHEALEDAREQIELlepirELAERYAAARERLAELEYLRAALRLWfaQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 563 KEEKLRDIKSHQADLELEV---KNSLDTIHRLESELKKQskIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKD 639
Cdd:COG4913 293 LEAELEELRAELARLEAELerlEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 166214932 640 LSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDL 700
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
218-567 |
2.33e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 2.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 218 DRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGA------IKNKLRQTET-EKNQLEQElEL 290
Cdd:COG3096 281 RELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAAsdhlnlVQTALRQQEKiERYQEDLE-EL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 291 SRRLLNQSEgsretllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQdeQGEDWRFRRGVEREK--QDLEK----- 363
Cdd:COG3096 360 TERLEEQEE--------VVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQ--QALDVQQTRAIQYQQavQALEKaralc 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 364 QMSDLRV------QLNFSAMASELEEVKRCMERK-DKEKAHlASQ-------VENLTRELENGE--KQQLQMLDRLKEIQ 427
Cdd:COG3096 430 GLPDLTPenaedyLAAFRAKEQQATEEVLELEQKlSVADAA-RRQfekayelVCKIAGEVERSQawQTARELLRRYRSQQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 428 NHFDTCEA-ERKHADL-----QISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwklkHKKLE 501
Cdd:COG3096 509 ALAQRLQQlRAQLAELeqrlrQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQ----RSELR 584
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 166214932 502 RALEKQSETVDELTGKNNQILKEKD---ELKTQLYAAL---QQIENLRKELNDVLTKRALQEEELHSKEEKL 567
Cdd:COG3096 585 QQLEQLRARIKELAARAPAWLAAQDaleRLREQSGEALadsQEVTAAMQQLLEREREATVERDELAARKQAL 656
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
183-569 |
2.77e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 183 NRELSRRSRSDAETKRalEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALkkqeak 262
Cdd:PRK02224 347 LREDADDLEERAEELR--EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR------ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 263 adEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQS---------EGSreTLLHQVEELRTQLTKAEGDRKGLQHQVSQI 333
Cdd:PRK02224 419 --EERDELREREAELEATLRTARERVEEAEALLEAGkcpecgqpvEGS--PHVETIEEDRERVEELEAELEDLEEEVEEV 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 334 SKQQSNYQDEQGEDWRFRRGVEReKQDLEKQMSDLRvqlnfsamaSELEEVKRCMERKDKEKAHLASQVENLTRELENGE 413
Cdd:PRK02224 495 EERLERAEDLVEAEDRIERLEER-REDLEELIAERR---------ETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 414 KQQLQMLDRLKEIQNHFDTCEAERKHADlQISELTRHAEDATKQAERY------LSEL--QQSEALKEEAEKRREDLKLK 485
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLrekreaLAELndERRERLAEKRERKRELEAEF 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 486 AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKtqlyAALQQIENLRKELnDVLTKRALQEEELHSKEE 565
Cdd:PRK02224 644 DEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE----NELEELEELRERR-EALENRVEALEALYDEAE 718
|
....
gi 166214932 566 KLRD 569
Cdd:PRK02224 719 ELES 722
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
600-963 |
3.31e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 600 KIQSQMKVEKAHLEEEIAE--LKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE 677
Cdd:pfam02463 146 IIAMMKPERRLEIEEEAAGsrLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEY 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 678 ETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKL 757
Cdd:pfam02463 226 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 758 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESIL--------- 828
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLakkkleser 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 829 ---GVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNL 905
Cdd:pfam02463 386 lssAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 166214932 906 TENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALETSTQ 963
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
221-817 |
3.45e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 221 ERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGA------IKNKLRQTETEKNQLEQELELSRRL 294
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATrhlcnlLKETCARSAEKTKKYEYEREETRQV 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 295 LNQSEGSRETLLHQVEELRTQltkAEGDRKGLQHQVSQISKQQSNYQDEqgedwrfrrgVEREKQDLEKQMSDLRVQLNF 374
Cdd:pfam05483 185 YMDLNNNIEKMILAFEELRVQ---AENARLEMHFKLKEDHEKIQHLEEE----------YKKEINDKEKQVSLLLIQITE 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 375 SamaseleevkrcmERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFdTCEAERKHADLQISELTRHA-ED 453
Cdd:pfam05483 252 K-------------ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHL-TKELEDIKMSLQRSMSTQKAlEE 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 454 ATKQAERYLSEL-QQSEALKEEAEKRR-----------------EDLKLKAQESIRQWKLKHKKLERALEKQSETVDELT 515
Cdd:pfam05483 318 DLQIATKTICQLtEEKEAQMEELNKAKaahsfvvtefeattcslEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMT 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 516 GKNNQILKEKDELKT------QLYAALQQIENLRKEL----NDVLTKRALQEEELH-----------SKEEKLRDIKSHQ 574
Cdd:pfam05483 398 KFKNNKEVELEELKKilaedeKLLDEKKQFEKIAEELkgkeQELIFLLQAREKEIHdleiqltaiktSEEHYLKEVEDLK 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 575 ADLELE-VKNSLDTIH--RLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQdkaklleMQESIKDLSAIRADLANKL 651
Cdd:pfam05483 478 TELEKEkLKNIELTAHcdKLLLENKELTQEASDMTLELKKHQEDIINCKKQEER-------MLKQIENLEEKEMNLRDEL 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 652 aeeeRAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFK--KEKSEA 729
Cdd:pfam05483 551 ----ESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKalKKKGSA 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 730 ENhirtlkaeslEEKNMAKIHRGQLEKLKSQCDRLTEELTqnENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEA 809
Cdd:pfam05483 627 EN----------KQLNAYEIKVNKLELELASAKQKFEEII--DNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEI 694
|
....*...
gi 166214932 810 RLQLKDQL 817
Cdd:pfam05483 695 DKRCQHKI 702
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
251-796 |
4.05e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 4.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 251 QLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEElRTQLTKAEGDRKGLQHQV 330
Cdd:pfam05483 78 RLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEE-EIQENKDLIKENNATRHL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 331 SQISKQQSNYQDEQGEDWRFRRGVERE-KQDLEKQMSdlRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTREL 409
Cdd:pfam05483 157 CNLLKETCARSAEKTKKYEYEREETRQvYMDLNNNIE--KMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKE 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 410 ENGEKQQLQMLdrlkeiqnHFDTCEAERKHADLQIseLTRHAEDATKQAERYLSelQQSEALKEEAEKRR------EDLK 483
Cdd:pfam05483 235 INDKEKQVSLL--------LIQITEKENKMKDLTF--LLEESRDKANQLEEKTK--LQDENLKELIEKKDhltkelEDIK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 484 LKAQESIRqwklKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLtKRALQEEELHSK 563
Cdd:pfam05483 303 MSLQRSMS----TQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELL-RTEQQRLEKNED 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 564 EEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQEsiKDLSAI 643
Cdd:pfam05483 378 QLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQARE--KEIHDL 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 644 RADLANKLAEEERAKKAVlKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVK------TKHEQNIQE 717
Cdd:pfam05483 456 EIQLTAIKTSEEHYLKEV-EDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQediincKKQEERMLK 534
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 166214932 718 LMKHFKKEKSEAENHIRTLKAESLEEKNMAKIhrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHI 796
Cdd:pfam05483 535 QIENLEEKEMNLRDELESVREEFIQKGDEVKC---KLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNI 610
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
443-629 |
4.39e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 44.03 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 443 QISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwKLKHKKLERALEKQSEtvdELTGKNNQIL 522
Cdd:PRK09510 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ-AEEAAKQAALKQKQAE---EAAAKAAAAA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 523 KEK-DELKTQLYAALQQIENLRKELNDVLTKrALQEEELHSKEEKLRDIKshqADLELEVKNSLDTIHRLESELKKQSKI 601
Cdd:PRK09510 146 KAKaEAEAKRAAAAAKKAAAEAKKKAEAEAA-KKAAAEAKKKAEAEAAAK---AAAEAKKKAEAEAKKKAAAEAKKKAAA 221
|
170 180
....*....|....*....|....*...
gi 166214932 602 QSQMKVEKAHLEEEIAELKKSQAQDKAK 629
Cdd:PRK09510 222 EAKAAAAKAAAEAKAAAEKAAAAKAAEK 249
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
371-529 |
4.97e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 4.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 371 QLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEiqnhfdtcEAERKHADLqiseltrh 450
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE--------EAEKEAQQA-------- 578
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 166214932 451 AEDATKQAERYLSELQQSEALKEEAEKRREdlklkAQESIRQWKLKHKKLERALEKQSETVDEltgknnqiLKEKDELK 529
Cdd:PRK00409 579 IKEAKKEADEIIKELRQLQKGGYASVKAHE-----LIEARKRLNKANEKKEKKKKKQKEKQEE--------LKVGDEVK 644
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
194-554 |
7.76e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 7.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 194 AETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNK 273
Cdd:COG4717 135 EALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 274 LRQTETEKNQLEQELE-LSRRLLNQSEGSR-----------------ETLLHQVEELRTQLTKAEGDRKGLQHQVSQI-S 334
Cdd:COG4717 215 LEEAQEELEELEEELEqLENELEAAALEERlkearlllliaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLlA 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 335 KQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAmaSELEEVKRCMERKDKEKAHLASQVENLTRELENGEK 414
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSP--EELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 415 QQL---------QMLDRLKEIQNHFDTCEAERKHADLQISEL--TRHAEDATKQAERYLSELQQSEALKEEAEKRREDLK 483
Cdd:COG4717 373 AALlaeagvedeEELRAALEQAEEYQELKEELEELEEQLEELlgELEELLEALDEEELEEELEELEEELEELEEELEELR 452
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 166214932 484 LKAQEsiRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRA 554
Cdd:COG4717 453 EELAE--LEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERA 521
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
465-616 |
8.50e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.16 E-value: 8.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 465 LQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELtgknnqilkEKDELKTQLYAALQQIENLRK 544
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR---------EREELQREEERLVQKEEQLDA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 545 ELNDVltkrALQEEELHSKEEKL------RDIKSHQADLELEVKNSLDT-------IHRLESELKKQSKIQSQMKVEKAH 611
Cdd:PRK12705 96 RAEKL----DNLENQLEEREKALsareleLEELEKQLDNELYRVAGLTPeqarkllLKLLDAELEEEKAQRVKKIEEEAD 171
|
....*
gi 166214932 612 LEEEI 616
Cdd:PRK12705 172 LEAER 176
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
495-802 |
8.52e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 8.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 495 LKHKKLERALEKQSETVDELTGKNNQIlkekDELKTQLYAALQQIENLRKELNDvltkralqeeelhsKEEKLRDIKSHQ 574
Cdd:PRK01156 159 LEINSLERNYDKLKDVIDMLRAEISNI----DYLEEKLKSSNLELENIKKQIAD--------------DEKSHSITLKEI 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 575 ADLELEVKNSLDTIHRLESELKKQSKIQSqmkvEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEE 654
Cdd:PRK01156 221 ERLSIEYNNAMDDYNNLKSALNELSSLED----MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNY 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 655 ERAKKAVLKDLSDLTAQAKSRDEETATIITQLK----LERD-----VHQRELKDLTSSLQSVKTkHEQNIQELMKHFKKE 725
Cdd:PRK01156 297 INDYFKYKNDIENKKQILSNIDAEINKYHAIIKklsvLQKDyndyiKKKSRYDDLNNQILELEG-YEMDYNSYLKSIESL 375
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 166214932 726 KSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEH 802
Cdd:PRK01156 376 KKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQ 452
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
199-447 |
8.61e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 8.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 199 ALEELTEKLNEAQkqEVVSDRVERRLQELEREMRTERE------------------------------LVERRQDQLGLM 248
Cdd:PRK04863 356 DLEELEERLEEQN--EVVEEADEQQEENEARAEAAEEEvdelksqladyqqaldvqqtraiqyqqavqALERAKQLCGLP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 249 SLQL------QEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGS------RETLLH--------- 307
Cdd:PRK04863 434 DLTAdnaedwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSeawdvaRELLRRlreqrhlae 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 308 QVEELRTQLTKAEGD---RKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQlnFSAMASELEEV 384
Cdd:PRK04863 514 QLQQLRMRLSELEQRlrqQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARER--RMALRQQLEQL 591
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 166214932 385 KRCMER-KDKEKAHLASQvENLTR-------ELENGE---KQQLQMLDRLKEIQNHFDTCEAERKHADLQISEL 447
Cdd:PRK04863 592 QARIQRlAARAPAWLAAQ-DALARlreqsgeEFEDSQdvtEYMQQLLERERELTVERDELAARKQALDEEIERL 664
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
456-947 |
8.74e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 456 KQAERYLSELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVDELtgknnqilkekdELKTQLYAA 535
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYA-ELQEELEELEEELEELEAELEELREELEKL------------EKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 536 LQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLElEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEE 615
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 616 IAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKdLSDLTAQAKSRDEETATIITQLKLERDVhqr 695
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAA-LLALLGLGGSLLSLILTIAGVLFLVLGL--- 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 696 eLKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHR------GQLEKLKSQCDRLTEELT 769
Cdd:COG4717 286 -LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLelldriEELQELLREAEELEEELQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 770 QNENENKKLKLKYQCLKDQLEEREKHISIEEEhLRRMEEARLQLKDQLLCLETEQESILGVIGKEidaacktfskdsvek 849
Cdd:COG4717 365 LEELEQEIAALLAEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEE--------------- 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 850 lkvfssgpdihydphrwlaESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKesELQCLFQQIERQEQLLDE 929
Cdd:COG4717 429 -------------------ELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG--ELAELLQELEELKAELRE 487
|
490 500
....*....|....*....|....
gi 166214932 930 IHREK------RDLLEETQRKDEE 947
Cdd:COG4717 488 LAEEWaalklaLELLEEAREEYRE 511
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
549-744 |
9.13e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 9.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 549 VLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKA 628
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 629 KLLE----MQESIKDLSAI--------------RADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLER 690
Cdd:COG3883 87 ELGEraraLYRSGGSVSYLdvllgsesfsdfldRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 166214932 691 DVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEK 744
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
343-965 |
9.21e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 9.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 343 EQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQL--QML 420
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLlkQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 421 DRLKEIQNHFDTCEAERKHADLQ-----ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLkLKAQESIRQWKL 495
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRArkaapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAH-VKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 496 KHKKLERALEKQSETVDELTGKNNQILKEKDELK-----TQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDI 570
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhihtlQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 571 KSHqadlelevknsldtihrleseLKKQSKIQsqmKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANK 650
Cdd:TIGR00618 426 LAH---------------------AKKQQELQ---QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQI 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 651 LAEEERAKKAVLKDLSDLTAQAKSRDEETA--TIITQLKLERDVHQR---ELKDLTSSLQSVKTKHEQNIQELMKHFKKE 725
Cdd:TIGR00618 482 HLQETRKKAVVLARLLELQEEPCPLCGSCIhpNPARQDIDNPGPLTRrmqRGEQTYAQLETSEEDVYHQLTSERKQRASL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 726 KSEAENHIRTLKAESLEEKNMAKIhrgqLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEhlRR 805
Cdd:TIGR00618 562 KEQMQEIQQSFSILTQCDNRSKED----IPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLH--LQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 806 MEEARLQLKdqLLCLETEQESILgviGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERE 885
Cdd:TIGR00618 636 QCSQELALK--LTALHALQLTLT---QERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 886 NREKNLRHQlmlcRQQLRNLTENKESELQclfQQIERQEQLLDEIHREKRDLLEETQRKDEEmgSLQDRVIALETSTQVA 965
Cdd:TIGR00618 711 THIEEYDRE----FNEIENASSSLGSDLA---AREDALNQSLKELMHQARTVLKARTEAHFN--NNEEVTAALQTGAELS 781
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
195-666 |
9.40e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 9.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 195 ETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSLQLQEALKKQEAKADEHEGAIKNKL 274
Cdd:pfam12128 461 ELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFL 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 275 RqteTEKNQLEQELE--LSRRLL---------NQSEGSRETLLHQV----------------EELRTQLTKAEGDRKGLQ 327
Cdd:pfam12128 541 R---KEAPDWEQSIGkvISPELLhrtdldpevWDGSVGGELNLYGVkldlkridvpewaaseEELRERLDKAEEALQSAR 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 328 HQVSQISKQQSNYQDEQGEdwrFRRGVEREKQDLEKqmSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTR 407
Cdd:pfam12128 618 EKQAAAEEQLVQANGELEK---ASREETFARTALKN--ARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLK 692
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 408 ELENGEKQQLQmldrlkEIQNHFDTCEAERKHADLQISELTRHAEDATKQA--ERYLSELQQSEALKEEaekRREDLKLK 485
Cdd:pfam12128 693 QLDKKHQAWLE------EQKEQKREARTEKQAYWQVVEGALDAQLALLKAAiaARRSGAKAELKALETW---YKRDLASL 763
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 486 AQESIRQWKLK------HKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNdvltkralqeee 559
Cdd:pfam12128 764 GVDPDVIAKLKreirtlERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLA------------ 831
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 560 lhskeEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSqmKVEKAHLEEEIAELKKSQAQDKAKLlemqesiKD 639
Cdd:pfam12128 832 -----RLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMS--KLATLKEDANSEQAQGSIGERLAQL-------ED 897
|
490 500
....*....|....*....|....*..
gi 166214932 640 LSAIRADLANKLAEEERAKKAVLKDLS 666
Cdd:pfam12128 898 LKLKRDYLSESVKKYVEHFKNVIADHS 924
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
608-792 |
1.00e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQL- 686
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALy 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 687 -------KLERDVHQRELKDLTSSLQSVKTKHEQNiQELMKHFKKEKSEAENH---IRTLKAESLEEKNMAKIHRGQLEK 756
Cdd:COG3883 97 rsggsvsYLDVLLGSESFSDFLDRLSALSKIADAD-ADLLEELKADKAELEAKkaeLEAKLAELEALKAELEAAKAELEA 175
|
170 180 190
....*....|....*....|....*....|....*.
gi 166214932 757 LKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER 792
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
219-818 |
1.01e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.27 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 219 RVERRLQELEREMRTERELVERRQDQ-LGLMSLQLQEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELElsRRLLNQ 297
Cdd:pfam10174 145 RIETQKQTLGARDESIKKLLEMLQSKgLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELH--RRNQLQ 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 298 SEGSRETLLHQVEELRTqltkaegdrkglqhqvSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSA- 376
Cdd:pfam10174 223 PDPAKTKALQTVIEMKD----------------TKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKf 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 377 MASELEEVKRCMERKDKEKAHLASQVENLTreleNGEKQQLQMLDRLKE-----------IQNHFDTCEAERKHADLQIS 445
Cdd:pfam10174 287 MKNKIDQLKQELSKKESELLALQTKLETLT----NQNSDCKQHIEVLKEsltakeqraaiLQTEVDALRLRLEEKESFLN 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 446 ELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLE------RALEKQSETVDELTGKNN 519
Cdd:pfam10174 363 KKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAglkervKSLQTDSSNTDTALTTLE 442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 520 QILKEKDELKTQL--------YAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRL 591
Cdd:pfam10174 443 EALSEKERIIERLkeqreredRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSL 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 592 ESELKKQ----SKIQSQMKveKAHlEEEIAELKKSQAQDKAKLLEmqesiKDLSAIRADLANKLAEEERakkaVLKDLSD 667
Cdd:pfam10174 523 EIAVEQKkeecSKLENQLK--KAH-NAEEAVRTNPEINDRIRLLE-----QEVARYKEESGKAQAEVER----LLGILRE 590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 668 LTAQAKSRDEETATIitqlkleRDVHQRELKDltsslQSVKTKHEQNIQELMKhfKKEKSEAENHIRtlkaeslEEKNMA 747
Cdd:pfam10174 591 VENEKNDKDKKIAEL-------ESLTLRQMKE-----QNKKVANIKHGQQEMK--KKGAQLLEEARR-------REDNLA 649
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 166214932 748 KIHRgqleklKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLL 818
Cdd:pfam10174 650 DNSQ------QLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEAL 714
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
708-994 |
1.15e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 708 KTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEknmakihrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKD 787
Cdd:TIGR02169 202 RLRREREKAERYQALLKEKREYEGYELLKEKEALER---------QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 788 QLEEREKHISieeehlRRMEEARLQLKDQLLCLETEQESILGVIG---KEIDAACKTFSKDSVEKLKVFSSGPDIHYDPH 864
Cdd:TIGR02169 273 LLEELNKKIK------DLGEEEQLRVKEKIGELEAEIASLERSIAekeRELEDAEERLAKLEAEIDKLLAEIEELEREIE 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 865 RW----------LAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKES---ELQCLFQQIERQEQLLDEIH 931
Cdd:TIGR02169 347 EErkrrdklteeYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINElkrELDRLQEELQRLSEELADLN 426
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 166214932 932 REKRDLLEETQRKDEEMGSLQDRVIALETSTQVALDHLESVPEKLS-LLEDFKDFRDSCSSSER 994
Cdd:TIGR02169 427 AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYdLKEEYDRVEKELSKLQR 490
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
252-807 |
1.25e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.12 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 252 LQEALKKQEAKADEHEGA-IKNKLRQTETEKNQLeqelelsrrllnqSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQV 330
Cdd:TIGR01612 701 LKSKIDKEYDKIQNMETAtVELHLSNIENKKNEL-------------LDIIVEIKKHIHGEINKDLNKILEDFKNKEKEL 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 331 SQISKQQSNYQDEQGEdwrfrrgverekqdLEKQMSDLRVQLN--FSAMASELEEVKRCMErKDKEKAHLASQVENLTRE 408
Cdd:TIGR01612 768 SNKINDYAKEKDELNK--------------YKSKISEIKNHYNdqINIDNIKDEDAKQNYD-KSKEYIKTISIKEDEIFK 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 409 LENGEK-QQLQMLDRLKEIQNHFDTCEAERKHADLQISELTR--HAEDATKQAERYLSELQQSEALKEEAEKRRED---- 481
Cdd:TIGR01612 833 IINEMKfMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNkiKAEISDDKLNDYEKKFNDSKSLINEINKSIEEeyqn 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 482 ----------LKL--KAQESIRQWKLKHKKLERALEKQSETVDE---------------LTGKNNQILKEKDELKTQLYA 534
Cdd:TIGR01612 913 intlkkvdeyIKIceNTKESIEKFHNKQNILKEILNKNIDTIKEsnlieksykdkfdntLIDKINELDKAFKDASLNDYE 992
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 535 A-----LQQIENLRKEL-----NDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSL-DTIHRLESELKKQSKIQS 603
Cdd:TIGR01612 993 AknnelIKYFNDLKANLgknkeNMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIyNIIDEIEKEIGKNIELLN 1072
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 604 QMKVEKAhleeEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEE-ERAKKAVLKDLSDLTAQAKSRDEETATI 682
Cdd:TIGR01612 1073 KEILEEA----EINITNFNEIKEKLKHYNFDDFGKEENIKYADEINKIKDDiKNLDQKIDHHIKALEEIKKKSENYIDEI 1148
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 683 ITQL-KLE----RDVHQRELKDLTSSLQSVKTK--HEQNIQELMKHFKKEKSEAENhirtlKAESLEEKNMAKIHRGQ-L 754
Cdd:TIGR01612 1149 KAQInDLEdvadKAISNDDPEEIEKKIENIVTKidKKKNIYDEIKKLLNEIAEIEK-----DKTSLEEVKGINLSYGKnL 1223
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 166214932 755 EKLKsqCDRLTEELTQNENENKKLKLKYQCL---KDQLEEREKHISIEEEHLRRME 807
Cdd:TIGR01612 1224 GKLF--LEKIDEEKKKSEHMIKAMEAYIEDLdeiKEKSPEIENEMGIEMDIKAEME 1277
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
586-792 |
1.37e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 586 DTIHRLESELK----KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKK-- 659
Cdd:PHA02562 174 DKIRELNQQIQtldmKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEdp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 660 -AVLKDLSDLTAQAKSRDEE-----------------TATIITQLKLERDVHQReLKDLTSSLQSVKTKHEQnIQELMKH 721
Cdd:PHA02562 254 sAALNKLNTAAAKIKSKIEQfqkvikmyekggvcptcTQQISEGPDRITKIKDK-LKELQHSLEKLDTAIDE-LEEIMDE 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 166214932 722 F---KKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER 792
Cdd:PHA02562 332 FneqSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
462-654 |
1.67e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 462 LSELQQSEALKEEAEKRREDLKLKAQESIRQWKlkhkKLERALEKQSETVDELTgknnqilKEKDELKTQLYAALQQIEN 541
Cdd:COG1579 9 LLDLQELDSELDRLEHRLKELPAELAELEDELA----ALEARLEAAKTELEDLE-------KEIKRLELEIEEVEARIKK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 542 LRKELNDVLTKRalqeeELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKqskIQSQMKVEKAHLEEEIAELKk 621
Cdd:COG1579 78 YEEQLGNVRNNK-----EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAE---LEAELAELEAELEEKKAELD- 148
|
170 180 190
....*....|....*....|....*....|...
gi 166214932 622 sqaqdkAKLLEMQESIKDLSAIRADLANKLAEE 654
Cdd:COG1579 149 ------EELAELEAELEELEAEREELAAKIPPE 175
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
494-660 |
1.97e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 494 KLKHKKLERALEKQSETVDELTGKNNQILKEKdelktqLYAALQQIENLRKELNDVLTKR----ALQEEELHSKEEKLRD 569
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEA------LLEAKEEIHKLRNEFEKELRERrnelQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 570 IKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAqdKAKLLE-MQESIKDLSAIRADLA 648
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA--KEILLEkVEEEARHEAAVLIKEI 178
|
170
....*....|..
gi 166214932 649 NKLAEEERAKKA 660
Cdd:PRK12704 179 EEEAKEEADKKA 190
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
469-743 |
2.02e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 42.34 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 469 EALKEEAEKRREDL-KLKAQESIRQWKLKHKKLERALEKQSETvdeltgknnqilKEKDELKTQlyaalqqienlRKELN 547
Cdd:PTZ00108 1105 EKLNAELEKKEKELeKLKNTTPKDMWLEDLDKFEEALEEQEEV------------EEKEIAKEQ-----------RLKSK 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 548 DVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDK 627
Cdd:PTZ00108 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVK 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 628 AKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSV 707
Cdd:PTZ00108 1242 RLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAAL 1321
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 166214932 708 KTKHEQNI---------QELMKHFKKEKSEAENHIRTLKAESLEE 743
Cdd:PTZ00108 1322 KKKKKSEKktarkkkskTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
484-770 |
2.26e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 484 LKAQESIRQWKLKHKKLERALEKQSETVDELTGknnqilkEKDELKTQLYAALQQIENLRKELND------VLTKRALQe 557
Cdd:PRK04863 344 LRQQEKIERYQADLEELEERLEEQNEVVEEADE-------QQEENEARAEAAEEEVDELKSQLADyqqaldVQQTRAIQ- 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 558 eeLHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSK----IQSQMKVEKAHLE--EEIAEL--------KKSQ 623
Cdd:PRK04863 416 --YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEellsLEQKLSVAQAAHSqfEQAYQLvrkiagevSRSE 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 624 AQDKAK-LLEMQESIKDLSAIRADLANKLAEEER--AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDL 700
Cdd:PRK04863 494 AWDVAReLLRRLREQRHLAEQLQQLRMRLSELEQrlRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSES 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 701 TSSLQSVKTKHEQNIQELMKHFKKEKS---------EAENHIRTLKAESLEEKNM--------------AKIHRGQLEKL 757
Cdd:PRK04863 574 VSEARERRMALRQQLEQLQARIQRLAArapawlaaqDALARLREQSGEEFEDSQDvteymqqllerereLTVERDELAAR 653
|
330
....*....|...
gi 166214932 758 KSQCDRLTEELTQ 770
Cdd:PRK04863 654 KQALDEEIERLSQ 666
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
557-669 |
2.48e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 557 EEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKK-QSKIQSQMKVEKA--HLEEEIAELKKsqaqdkaKLLEM 633
Cdd:COG2433 412 EEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEaRSEERREIRKDREisRLDREIERLER-------ELEEE 484
|
90 100 110
....*....|....*....|....*....|....*.
gi 166214932 634 QESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLT 669
Cdd:COG2433 485 RERIEELKRKLERLKELWKLEHSGELVPVKVVEKFT 520
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
536-974 |
3.17e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 536 LQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLE-- 613
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEel 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 614 -EEIAELKKSQAQDKAKLLEMQESIKDLSairaDLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDV 692
Cdd:PRK03918 237 kEEIEELEKELESLEGSKRKLEEKIRELE----ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 693 hQRELKDLTSSLQSVKTKHEQ--NIQELMKHFKKEKSEAENHIRTLKaESLEEKNMAKIHRGQLEKLKSQCDRLTEEltq 770
Cdd:PRK03918 313 -EKRLSRLEEEINGIEERIKEleEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTPE--- 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 771 nenenkKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLEtEQESILGVIGKEIDaacktfskdsvekl 850
Cdd:PRK03918 388 ------KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK-KAKGKCPVCGRELT-------------- 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 851 kvfssgpdiHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNltENKESELQCLFQQIERQEQLLDEI 930
Cdd:PRK03918 447 ---------EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKK--ESELIKLKELAEQLKELEEKLKKY 515
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 166214932 931 HrekrdlLEETQRKDEEMGSLQDRVIALETSTQVALDHLESVPE 974
Cdd:PRK03918 516 N------LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE 553
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
458-758 |
3.19e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 458 AERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQ 537
Cdd:COG4372 1 GDRLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 538 QIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIA 617
Cdd:COG4372 81 ELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 618 ELkksqaQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQREL 697
Cdd:COG4372 161 SL-----QEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLAL 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 166214932 698 KDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLK 758
Cdd:COG4372 236 SALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELK 296
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
559-720 |
3.44e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 559 ELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQeSIK 638
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR-NNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 639 DLSAIradlankLAEEERAKKAvLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQEL 718
Cdd:COG1579 90 EYEAL-------QKEIESLKRR-ISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
|
..
gi 166214932 719 MK 720
Cdd:COG1579 162 EA 163
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
349-994 |
3.66e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 349 RFRRGVEREKQDLEKQMSDLRVQLNFSAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQN 428
Cdd:TIGR00606 190 TLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDN 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 429 HFDTCEAERKHADLQISELTRHAEDATKQAErylselqqsEALKEEAEKRREDLKLKAQESIR-QWKLKHKKLERALEKQ 507
Cdd:TIGR00606 270 EIKALKSRKKQMEKDNSELELKMEKVFQGTD---------EQLNDLYHNHQRTVREKERELVDcQRELEKLNKERRLLNQ 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 508 SETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELnDVLTKRALQEEELHSKEEKLRDIKSHQAdlELEVKNSLDT 587
Cdd:TIGR00606 341 EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEL-DGFERGPFSERQIKNFHTLVIERQEDEA--KTAAQLCADL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 588 IHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDlsairadlANKLAEEERAKKAVLKDLSD 667
Cdd:TIGR00606 418 QSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS--------SDRILELDQELRKAERELSK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 668 LtaqaksrdEETATIITQLKLERDVhQRELKDLTSSLQSVKTK-----HEQNIQELMKHFKKEKSEAENHIRTLKAESLE 742
Cdd:TIGR00606 490 A--------EKNSLTETLKKEVKSL-QNEKADLDRKLRKLDQEmeqlnHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSD 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 743 EKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQclkdQLEEREKHISIEEEhlrRMEEARLQLKDQLL--CL 820
Cdd:TIGR00606 561 ELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELA----SLEQNKNHINNELE---SKEEQLSSYEDKLFdvCG 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 821 ETEQESILGVIGKEIDAACKTFSKDSVeKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQ 900
Cdd:TIGR00606 634 SQDEESDLERLKEEIEKSSKQRAMLAG-ATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLK 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 901 QLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQDRVIALETSTQVALDHLESVPEKLSLLE 980
Cdd:TIGR00606 713 STESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT 792
|
650
....*....|....
gi 166214932 981 DFKDFRDSCSSSER 994
Cdd:TIGR00606 793 IMERFQMELKDVER 806
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
434-546 |
3.74e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 434 EAERKHADLQ----ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE 509
Cdd:PRK12704 52 EAIKKEALLEakeeIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 166214932 510 TVDELTGKNNQILKE-----KDELKTQLyaalqqIENLRKEL 546
Cdd:PRK12704 132 ELEELIEEQLQELERisgltAEEAKEIL------LEKVEEEA 167
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
168-343 |
4.19e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 168 LRDLSSEQIRLGDDFNRELSRRSRSDAETK--RALEELTEKLNEAQKQEVVSDRVERRLQELERemrtERELVERRQDQL 245
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDalQERREALQRLAEYSWDEIDVASAEREIAELEA----ELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 246 GLMSLQLqEALKKQEAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSREtlLHQVEELRTQLTKAEGD--- 322
Cdd:COG4913 688 AALEEQL-EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR--LELRALLEERFAAALGDave 764
|
170 180
....*....|....*....|....
gi 166214932 323 ---RKGLQHQVSQISKQQSNYQDE 343
Cdd:COG4913 765 relRENLEERIDALRARLNRAEEE 788
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
512-667 |
4.19e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 512 DELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQAdlelEVKNSlDTIHRL 591
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG----NVRNN-KEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 592 ESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKD----LSAIRADLANKLAEEERAKKAVLKDLSD 667
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEkkaeLDEELAELEAELEELEAEREELAAKIPP 174
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
608-825 |
4.33e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 608 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKsrdeETATIITQLK 687
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA----ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 688 LERDVHQRELKDLTSSLQSVKTKHEQNI-------------QELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQL 754
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALllspedfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 166214932 755 EKLKSQCDRLTEELTQNENENKKLKlkyqclkDQLEEREKHisiEEEHLRRMEEARLQLKDQLLCLETEQE 825
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLL-------ARLEKELAE---LAAELAELQQEAEELEALIARLEAEAA 237
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
154-708 |
4.62e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.36 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 154 ETDDMTQLHGFHQSLRDLSSEQIRLGDDFNRELSR----RSRSDAETKRALEELteKLNEAQKQEVVSDRVERRLQELER 229
Cdd:pfam12128 271 ETLIASRQEERQETSAELNQLLRTLDDQWKEKRDElngeLSAADAAVAKDRSEL--EALEDQHGAFLDADIETAAADQEQ 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 230 E--MRTERELVERRQDQLGLMSLQLQEALKKQEAKADEhegaiknklrQTETEKNQLEQELELSRrllnqsegsretllh 307
Cdd:pfam12128 349 LpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKE----------QNNRDIAGIKDKLAKIR--------------- 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 308 qvEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFS-----AMASELE 382
Cdd:pfam12128 404 --EARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFderieRAREEQE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 383 EVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDT-----CEAERKHADLQISELTRHAedATKQ 457
Cdd:pfam12128 482 AANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPqagtlLHFLRKEAPDWEQSIGKVI--SPEL 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 458 AERY-LSELQQSEALKEEAEKRREDLKLKAQE------SIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT 530
Cdd:pfam12128 560 LHRTdLDPEVWDGSVGGELNLYGVKLDLKRIDvpewaaSEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASR 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 531 QLYAALQQIENLR---KELNDVLTKRALQ-----EEELHSKEEKLRDIKSHQADLELEVKNSLDTIHR--LESELKKQSK 600
Cdd:pfam12128 640 EETFARTALKNARldlRRLFDEKQSEKDKknkalAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEqkREARTEKQAY 719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 601 IQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQ--------------ESIKDLSAIRADLANKLAEEERAKKAVLK--- 663
Cdd:pfam12128 720 WQVVEGALDAQLALLKAAIAARRSGAKAELKALEtwykrdlaslgvdpDVIAKLKREIRTLERKIERIAVRRQEVLRyfd 799
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 166214932 664 ----------------------DLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVK 708
Cdd:pfam12128 800 wyqetwlqrrprlatqlsnierAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLR 866
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
450-660 |
4.87e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 40.83 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 450 HAEDATKQaeryLSELQQSEALKEEA----EKRREDL--KLKAQE-SIRQWKLKHKKLERALEKQSETVDELTGKNNQIL 522
Cdd:PRK11637 41 HASDNRDQ----LKSIQQDIAAKEKSvrqqQQQRASLlaQLKKQEeAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 523 KEKDE----LKTQLYAALQQIENLRKELndVLTKRALQEEEL---------HSKEEKLRDIKSHQADLELEVKNsldtih 589
Cdd:PRK11637 117 QQQAAqerlLAAQLDAAFRQGEHTGLQL--ILSGEESQRGERilayfgylnQARQETIAELKQTREELAAQKAE------ 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 166214932 590 rLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKA 660
Cdd:PRK11637 189 -LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREAKA 258
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
194-427 |
4.94e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 194 AETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLGLMSlqLQEALKKQEAKADEHEGAIKNK 273
Cdd:COG3206 185 PELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEA--RLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 274 --LRQTETEKNQLEQEL-ELSRRLLNQSEgsretllhQVEELRTQLTKAegdRKGLQHQVSQISKQQSNYqdeqgedwrf 350
Cdd:COG3206 263 pvIQQLRAQLAELEAELaELSARYTPNHP--------DVIALRAQIAAL---RAQLQQEAQRILASLEAE---------- 321
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 166214932 351 RRGVEREKQDLEKQMSDLRVQLN-FSAMASELEEvkrcmerkdkekahlasqvenLTRELENGEKQQLQMLDRLKEIQ 427
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAeLPELEAELRR---------------------LEREVEVARELYESLLQRLEEAR 378
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
185-814 |
5.25e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 5.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 185 ELSRRSRSDAETKRALEELTEKLNEAQKQEVVSDRV---ERRLQELEREMRTERELVERRQDQLGLMSLQLQEA------ 255
Cdd:PRK04863 480 QLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLqqlRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEdeleql 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 256 LKKQEAKADEHEgAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISK 335
Cdd:PRK04863 560 QEELEARLESLS-ESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLE 638
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 336 QQSNYQDEqgedwrfRRGVEREKQDLEKQMSDLRvqlnfSAMASELEEVKRCMER---------KDKEKAHLASQVENLT 406
Cdd:PRK04863 639 RERELTVE-------RDELAARKQALDEEIERLS-----QPGGSEDPRLNALAERfggvllseiYDDVSLEDAPYFSALY 706
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 407 RELE--------NGEKQQLQMLDRLKE----IQ--------NHFDTCEAER------KHADLQISELTRHAEDATKQAER 460
Cdd:PRK04863 707 GPARhaivvpdlSDAAEQLAGLEDCPEdlylIEgdpdsfddSVFSVEELEKavvvkiADRQWRYSRFPEVPLFGRAAREK 786
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 461 YLSELQ-QSEALKEEAEKRREDLKL--KAQESIRQWKLKHKKL------ERALEKQSETVDELTGKNNQILKEKDELKTQ 531
Cdd:PRK04863 787 RIEQLRaEREELAERYATLSFDVQKlqRLHQAFSRFIGSHLAVafeadpEAELRQLNRRRVELERALADHESQEQQQRSQ 866
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 532 LYAALQQIENLRKEL-------NDVLTKRALQ-EEELHSKEEKLRDIKSHQAdlelevknsldTIHRLESELkkqSKIQS 603
Cdd:PRK04863 867 LEQAKEGLSALNRLLprlnllaDETLADRVEEiREQLDEAEEAKRFVQQHGN-----------ALAQLEPIV---SVLQS 932
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 604 QmkvekahlEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANkLAEEERAKkaVLKDLSDLTAQAKSRDEETATII 683
Cdd:PRK04863 933 D--------PEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAH-FSYEDAAE--MLAKNSDLNEKLRQRLEQAEQER 1001
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 684 TQLKLERDVHQRELKDLTSSLQSVKTKHeQNIQELMKHFKKEKSEAenhirTLKAESLEEknmakihrgqlEKLKSQCDR 763
Cdd:PRK04863 1002 TRAREQLRQAQAQLAQYNQVLASLKSSY-DAKRQMLQELKQELQDL-----GVPADSGAE-----------ERARARRDE 1064
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 166214932 764 LTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLK 814
Cdd:PRK04863 1065 LHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
456-657 |
5.27e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 5.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 456 KQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAA 535
Cdd:PRK05771 40 LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKEL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 536 LQQIENLR--------------------------KELNDVLTKRALQEEELHSKEEKLRDI------KSHQADLE----- 578
Cdd:PRK05771 120 EQEIERLEpwgnfdldlslllgfkyvsvfvgtvpEDKLEELKLESDVENVEYISTDKGYVYvvvvvlKELSDEVEeelkk 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 579 --------LEVKNSLDTIHRLESELKKQSKiqsqmkvEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDlsaiRADLANK 650
Cdd:PRK05771 200 lgferlelEEEGTPSELIREIKEELEEIEK-------ERESLLEELKELAKKYLEELLALYEYLEIELE----RAEALSK 268
|
....*..
gi 166214932 651 LAEEERA 657
Cdd:PRK05771 269 FLKTDKT 275
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
278-464 |
7.03e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 7.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 278 ETEKNQLEQELELSRRLLNQSEGSRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSnyqdeqgedwrfrrgvere 357
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGA------------------- 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 358 kqDLEKQMSDLrvqlnfsamASELEEVKRCMERKDKEKAHLASQVENLTRElengekqqlqmldrLKEIQNHFDTCEAER 437
Cdd:PRK09039 113 --AAEGRAGEL---------AQELDSEKQVSARALAQVELLNQQIAALRRQ--------------LAALEAALDASEKRD 167
|
170 180 190
....*....|....*....|....*....|.
gi 166214932 438 KHADLQISELTRHAEDA----TKQAERYLSE 464
Cdd:PRK09039 168 RESQAKIADLGRRLNVAlaqrVQELNRYRSE 198
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
188-326 |
7.66e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 7.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 188 RRSRSDAETKRALEELTEKLNEAQKQEVVSDRVERRLQELEREMRTERELVERRQDQLG-------LMSLQLQ-EALKKQ 259
Cdd:COG1579 25 RLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvrnnkeYEALQKEiESLKRR 104
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 166214932 260 EAKADEHEGAIKNKLRQTETEKNQLEQELELSRRLLNQSEGSRETllhQVEELRTQLTKAEGDRKGL 326
Cdd:COG1579 105 ISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE---ELAELEAELEELEAEREEL 168
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
166-396 |
7.98e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 40.36 E-value: 7.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 166 QSLRDLSSEQIRLgddfnRELSRRSRSDAETKRALEELTEKLNE--------AQKQEVVSDRVER------RLQELEREM 231
Cdd:pfam13779 486 DAERRLRAAQERL-----SEALERGASDEEIAKLMQELREALDDymqalaeqAQQNPQDLQQPDDpnaqemTQQDLQRML 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 232 RTERELVER-RQDQLGLMSLQLQEALKK-QEAKADEHEGAIKNKLRQteteknQLEQELELSRRllnQSEGSRETL-LHQ 308
Cdd:pfam13779 561 DRIEELARSgRRAEAQQMLSQLQQMLENlQAGQPQQQQQQGQSEMQQ------AMDELGDLLRE---QQQLLDETFrQLQ 631
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 309 VEELRTQLTKAEGDRKGLQHQVSQISKQQSNYQDEQGEDWRFRRGVEREK---QDLEKQMSDLRvQLNFSAMASELEEVK 385
Cdd:pfam13779 632 QQGGQQQGQPGQQGQQGQGQQPGQGGQQPGAQMPPQGGAEALGDLAERQQalrRRLEELQDELK-ELGGKEPGQALGDAG 710
|
250
....*....|.
gi 166214932 386 RCMerKDKEKA 396
Cdd:pfam13779 711 RAM--RDAEEA 719
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
208-599 |
8.45e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 8.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 208 NEAQKQEVVSDRVERRLQELEREM-RTERELVERRQDQLGLMSLQlqealkKQEAKADEHEGAIKNKLRQTETEKNQLEQ 286
Cdd:pfam07888 59 KEKERYKRDREQWERQRRELESRVaELKEELRQSREKHEELEEKY------KELSASSEELSEEKDALLAQRAAHEARIR 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 287 ELELSRRLLNQSEGSRETLLHQVEELRTQLTkaegdrkglqhqvsqiskqqsnyqdeqgedwRFRRGVEREKQDLEKQMS 366
Cdd:pfam07888 133 ELEEDIKTLTQRVLERETELERMKERAKKAG-------------------------------AQRKEEEAERKQLQAKLQ 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 367 DLRVQLNfsAMASELEEVKRCMERKDKEKAHLASQVENLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISE 446
Cdd:pfam07888 182 QTEEELR--SLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEE 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 447 LtrhaEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELtgkNNQILKEKD 526
Cdd:pfam07888 260 L----SSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKL---SAELQRLEE 332
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 166214932 527 ELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQS 599
Cdd:pfam07888 333 RLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETVA 405
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
201-297 |
8.76e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 40.03 E-value: 8.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 201 EELTEKLNEAQ-KQEVVSDRVERRLQEL----------EREMRTErelVERRQDQLGLMSLQLQEALKKQE------AKA 263
Cdd:pfam10168 592 EKLAEKYEEIKdKQEKLMRRCKKVLQRLnsqlpvlsdaEREMKKE---LETINEQLKHLANAIKQAKKKMNyqryqiAKS 668
|
90 100 110
....*....|....*....|....*....|....*.
gi 166214932 264 DEHEG--AIKNKLRQTETEKNQLEQELELSRRLLNQ 297
Cdd:pfam10168 669 QSIRKksSLSLSEKQRKTIKEILKQLGSEIDELIKQ 704
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
261-489 |
9.22e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 9.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 261 AKADEHEGAIKNKLRQTETEKNQLEQELElsrRLLNQSEGSREtllhQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNY 340
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELD---ALQAELEELNE----EYNELQAELEALQAEIDKLQAEIAEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 341 QDEQGEDWR--FRRGVEREK----------QDLEKQMSDLRVQLnfSAMASELEEVKRCMERKDKEKAHLASQVENLTRE 408
Cdd:COG3883 85 REELGERARalYRSGGSVSYldvllgsesfSDFLDRLSALSKIA--DADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 409 LENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQE 488
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
.
gi 166214932 489 S 489
Cdd:COG3883 243 A 243
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
200-380 |
9.30e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 9.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 200 LEELTEKLNEAQKQevvSDRVERRLQELEREMRTERELVERRQDQLG-------------------LMSLQLQEALKKQE 260
Cdd:COG3883 46 LEELNEEYNELQAE---LEALQAEIDKLQAEIAEAEAEIEERREELGeraralyrsggsvsyldvlLGSESFSDFLDRLS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 166214932 261 AKADEHEgAIKNKLRQTETEKNQLEQElelsrrllnqsegsRETLLHQVEELRTQLTKAEGDRKGLQHQVSQISKQQSNY 340
Cdd:COG3883 123 ALSKIAD-ADADLLEELKADKAELEAK--------------KAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQL 187
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 166214932 341 QDEQGEDWRFRRGVEREKQDLEKQMSDLRVQLNFSAMASE 380
Cdd:COG3883 188 SAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAA 227
|
|
| |
