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RecName: Full=Protein DROOPING LEAF; AltName: Full=Protein CRABS CLAW homolog; Short=Protein CRC homolog
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
YABBY super family | cl04677 | YABBY protein; YABBY proteins are a group of plant-specific transcription involved in the ... |
5-144 | 1.81e-64 | |||
YABBY protein; YABBY proteins are a group of plant-specific transcription involved in the specification of abaxial polarity in lateral organs. The actual alignment was detected with superfamily member pfam04690: Pssm-ID: 461393 Cd Length: 163 Bit Score: 195.98 E-value: 1.81e-64
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Name | Accession | Description | Interval | E-value | |||
YABBY | pfam04690 | YABBY protein; YABBY proteins are a group of plant-specific transcription involved in the ... |
5-144 | 1.81e-64 | |||
YABBY protein; YABBY proteins are a group of plant-specific transcription involved in the specification of abaxial polarity in lateral organs. Pssm-ID: 461393 Cd Length: 163 Bit Score: 195.98 E-value: 1.81e-64
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HMG-box_SF | cd00084 | high mobility group (HMG)-box domain superfamily; The High Mobility Group (HMG)-box is found ... |
107-148 | 5.66e-06 | |||
high mobility group (HMG)-box domain superfamily; The High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenetically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4, and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions. Pssm-ID: 438789 [Multi-domain] Cd Length: 59 Bit Score: 42.12 E-value: 5.66e-06
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Name | Accession | Description | Interval | E-value | |||
YABBY | pfam04690 | YABBY protein; YABBY proteins are a group of plant-specific transcription involved in the ... |
5-144 | 1.81e-64 | |||
YABBY protein; YABBY proteins are a group of plant-specific transcription involved in the specification of abaxial polarity in lateral organs. Pssm-ID: 461393 Cd Length: 163 Bit Score: 195.98 E-value: 1.81e-64
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HMG-box_SF | cd00084 | high mobility group (HMG)-box domain superfamily; The High Mobility Group (HMG)-box is found ... |
107-148 | 5.66e-06 | |||
high mobility group (HMG)-box domain superfamily; The High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenetically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4, and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions. Pssm-ID: 438789 [Multi-domain] Cd Length: 59 Bit Score: 42.12 E-value: 5.66e-06
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HMG-box_HMG20A | cd22017 | high mobility group (HMG)-box found in high mobility group protein 20A (HMG20A) and similar ... |
86-148 | 8.60e-04 | |||
high mobility group (HMG)-box found in high mobility group protein 20A (HMG20A) and similar proteins; HMG20A, also called HMG box-containing protein 20A, HMG domain-containing protein 1 (HMGXB1), HMG domain-containing protein HMGX1, HMGXB1, or iBRAF, is a chromatin-associated protein involved in neuronal differentiation and maturation. It is required for SNAI1-mediated epithelial to mesenchymal transition. HMG20A acts as an inhibitor of HMG20B. Pssm-ID: 438833 [Multi-domain] Cd Length: 104 Bit Score: 37.23 E-value: 8.60e-04
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HMG-box_HMG20 | cd21980 | high mobility group (HMG)-box found in the high mobility group protein 20 (HMG20) subfamily; ... |
93-145 | 1.10e-03 | |||
high mobility group (HMG)-box found in the high mobility group protein 20 (HMG20) subfamily; The HMG20 subfamily includes HMG20A and HMG20B. HMG20A, also called HMG box-containing protein 20A, HMG domain-containing protein 1, HMG domain-containing protein HMGX1, HMGXB1, or iBRAF, is a chromatin-associated protein involved in neuronal differentiation and maturation. It is required for SNAI1-mediated epithelial to mesenchymal transition. HMG20A acts as an inhibitor of HMG20B. HMG20B, also called SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related, SMARCE1-related protein (SMARCE1R), BRCA2-associated factor 35 (BRAF35), HMG box-containing protein 20B, HMG domain-containing protein 2, HMG domain-containing protein HMGX2, Sox-like transcriptional factor, or structural DNA-binding protein BRAF35, is a DNA binding factor that acts as a repressor of erythroid differentiation. It is required for correct progression through the G2 phase of the cell cycle and entry into mitosis. It is also required for RCOR1/CoREST mediated repression of neuronal specific gene promoters. HMG20B is a core subunit of the Lys-specific demethylase 1/REST co-repressor 1 (LSD1-CoREST) histone demethylase complex. Both HMG20A and HMG20B contain one HMG-box. Pssm-ID: 438796 [Multi-domain] Cd Length: 81 Bit Score: 36.37 E-value: 1.10e-03
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HMG_box_2 | pfam09011 | HMG-box domain; This short 71 residue domain is an HMG-box domain. HMG-box domains mediate ... |
102-144 | 6.64e-03 | |||
HMG-box domain; This short 71 residue domain is an HMG-box domain. HMG-box domains mediate re-modelling of chromatin-structure. Mammalian HMG-box proteins are of two types: those that are non-sequence-specific DNA-binding proteins with two HMG-box domains and a long highly acidic C-tail; and a diverse group of sequence-specific transcription factor-proteins with either a single HMG-box or up to six copies, and no acidic C-tail. Pssm-ID: 430369 [Multi-domain] Cd Length: 72 Bit Score: 34.30 E-value: 6.64e-03
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Blast search parameters | ||||
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