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Conserved domains on  [gi|75018895|sp|Q94230|]
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RecName: Full=Transcriptional activator plp-1; AltName: Full=Pur-alpha-like protein 1

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PurA super family cl26986
PurA ssDNA and RNA-binding protein; This family represents most of the length of the protein.
14-224 1.19e-105

PurA ssDNA and RNA-binding protein; This family represents most of the length of the protein.


The actual alignment was detected with superfamily member pfam04845:

Pssm-ID: 282672 [Multi-domain]  Cd Length: 219  Bit Score: 303.68  E-value: 1.19e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75018895    14 EDSLATHQLTVQYKRYYIDVNENTRGRYIKIAELGTN-YKSRIILSIVAAKAIVSEISKMLALIDE--PSTGEHAPKE-S 89
Cdd:pfam04845   1 EQELASKRLDIQNKRFYLDVKQNTRGRFIKIAEVGAGgRKSRITLSMSVAAEFKDELSKFSDHYAQlgPSNGEHLPEDgS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75018895    90 SLIKSETLNVDGRKFYVDLKENVRGRFLRIAQMPM--NPRQTRQQIAIPSDGIAEIHKVLTEYLAKFGEGH----EQENT 163
Cdd:pfam04845  81 SLLKSETLVRDNRKYYLDLKENQRGRFLRIAQTPMrgNPRGQRQQIALPAQGMIEFRDALTDLIEDYGEGDendiPQELP 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 75018895   164 NTPKITAENKSFLFHSGKNDRGEFVRISEIKlnSGYRNAITVPMSALVDFRKELDNIIANQ 224
Cdd:pfam04845 161 EGTSLTVDNKRFYFDVGSNKRGVFLRISEVK--PNYRNSITVPEKAWTRFRDIFDKYIEKM 219
 
Name Accession Description Interval E-value
PurA pfam04845
PurA ssDNA and RNA-binding protein; This family represents most of the length of the protein.
14-224 1.19e-105

PurA ssDNA and RNA-binding protein; This family represents most of the length of the protein.


Pssm-ID: 282672 [Multi-domain]  Cd Length: 219  Bit Score: 303.68  E-value: 1.19e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75018895    14 EDSLATHQLTVQYKRYYIDVNENTRGRYIKIAELGTN-YKSRIILSIVAAKAIVSEISKMLALIDE--PSTGEHAPKE-S 89
Cdd:pfam04845   1 EQELASKRLDIQNKRFYLDVKQNTRGRFIKIAEVGAGgRKSRITLSMSVAAEFKDELSKFSDHYAQlgPSNGEHLPEDgS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75018895    90 SLIKSETLNVDGRKFYVDLKENVRGRFLRIAQMPM--NPRQTRQQIAIPSDGIAEIHKVLTEYLAKFGEGH----EQENT 163
Cdd:pfam04845  81 SLLKSETLVRDNRKYYLDLKENQRGRFLRIAQTPMrgNPRGQRQQIALPAQGMIEFRDALTDLIEDYGEGDendiPQELP 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 75018895   164 NTPKITAENKSFLFHSGKNDRGEFVRISEIKlnSGYRNAITVPMSALVDFRKELDNIIANQ 224
Cdd:pfam04845 161 EGTSLTVDNKRFYFDVGSNKRGVFLRISEVK--PNYRNSITVPEKAWTRFRDIFDKYIEKM 219
PUR smart00712
DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes ...
91-155 4.86e-21

DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria;


Pssm-ID: 197840 [Multi-domain]  Cd Length: 63  Bit Score: 82.66  E-value: 4.86e-21
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75018895     91 LIKSETLNVDGRKFYVDLKENVRGRFLRIAQMPMNPRqtRQQIAIPSDGIAEIHKVLTEYLAKFG 155
Cdd:smart00712   1 ELASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGG--RSSITVPEQGAAEFRDALTKLIEKYG 63
 
Name Accession Description Interval E-value
PurA pfam04845
PurA ssDNA and RNA-binding protein; This family represents most of the length of the protein.
14-224 1.19e-105

PurA ssDNA and RNA-binding protein; This family represents most of the length of the protein.


Pssm-ID: 282672 [Multi-domain]  Cd Length: 219  Bit Score: 303.68  E-value: 1.19e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75018895    14 EDSLATHQLTVQYKRYYIDVNENTRGRYIKIAELGTN-YKSRIILSIVAAKAIVSEISKMLALIDE--PSTGEHAPKE-S 89
Cdd:pfam04845   1 EQELASKRLDIQNKRFYLDVKQNTRGRFIKIAEVGAGgRKSRITLSMSVAAEFKDELSKFSDHYAQlgPSNGEHLPEDgS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75018895    90 SLIKSETLNVDGRKFYVDLKENVRGRFLRIAQMPM--NPRQTRQQIAIPSDGIAEIHKVLTEYLAKFGEGH----EQENT 163
Cdd:pfam04845  81 SLLKSETLVRDNRKYYLDLKENQRGRFLRIAQTPMrgNPRGQRQQIALPAQGMIEFRDALTDLIEDYGEGDendiPQELP 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 75018895   164 NTPKITAENKSFLFHSGKNDRGEFVRISEIKlnSGYRNAITVPMSALVDFRKELDNIIANQ 224
Cdd:pfam04845 161 EGTSLTVDNKRFYFDVGSNKRGVFLRISEVK--PNYRNSITVPEKAWTRFRDIFDKYIEKM 219
PUR smart00712
DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes ...
91-155 4.86e-21

DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria;


Pssm-ID: 197840 [Multi-domain]  Cd Length: 63  Bit Score: 82.66  E-value: 4.86e-21
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 75018895     91 LIKSETLNVDGRKFYVDLKENVRGRFLRIAQMPMNPRqtRQQIAIPSDGIAEIHKVLTEYLAKFG 155
Cdd:smart00712   1 ELASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGG--RSSITVPEQGAAEFRDALTKLIEKYG 63
PUR smart00712
DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes ...
162-225 1.25e-20

DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria;


Pssm-ID: 197840 [Multi-domain]  Cd Length: 63  Bit Score: 81.89  E-value: 1.25e-20
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 75018895    162 NTNTPKITAENKSFLFHSGKNDRGEFVRISEIKlNSGYRNAITVPMSALVDFRKELDNIIANQG 225
Cdd:smart00712   1 ELASKKLTVENKRFYFDVKENRRGRFLRISEVK-NNGGRSSITVPEQGAAEFRDALTKLIEKYG 63
PUR smart00712
DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes ...
17-77 6.76e-18

DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria;


Pssm-ID: 197840 [Multi-domain]  Cd Length: 63  Bit Score: 74.57  E-value: 6.76e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 75018895     17 LATHQLTVQYKRYYIDVNENTRGRYIKIAELGTNY-KSRIILSIVAAKAIVSEISKMLALID 77
Cdd:smart00712   2 LASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGgRSSITVPEQGAAEFRDALTKLIEKYG 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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