NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1557899047|gb|QAA92034|]
View 

Mg-protoporyphyrin IX chelatase, partial (plastid) [Proteomonas sulcata]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
chlI super family cl31777
Mg-protoporyphyrin IX chelatase
 1-74 1.68e-41

Mg-protoporyphyrin IX chelatase


The actual alignment was detected with superfamily member CHL00081:

Pssm-ID: 177020 [Multi-domain]  Cd Length: 350  Bit Score: 137.81  E-value: 1.68e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1557899047   1 IGGVIIMGDRGTGKSTTIRAITDILPKIDVIKDDPFNSHPTDFDLMSEDVRNAIESGESLDITQKNVSMIDLPL 74
Cdd:CHL00081   38 IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPL 111
 
Name Accession Description Interval E-value
chlI CHL00081
Mg-protoporyphyrin IX chelatase
 1-74 1.68e-41

Mg-protoporyphyrin IX chelatase


Pssm-ID: 177020 [Multi-domain]  Cd Length: 350  Bit Score: 137.81  E-value: 1.68e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1557899047   1 IGGVIIMGDRGTGKSTTIRAITDILPKIDVIKDDPFNSHPTDFDLMSEDVRNAIESGESLDITQKNVSMIDLPL 74
Cdd:CHL00081   38 IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPL 111
ChlI COG1239
Mg-chelatase subunit ChlI [Coenzyme transport and metabolism];
1-74 5.27e-29

Mg-chelatase subunit ChlI [Coenzyme transport and metabolism];


Pssm-ID: 440852 [Multi-domain]  Cd Length: 344  Bit Score: 104.83  E-value: 5.27e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1557899047   1 IGGVIIMGDRGTGKSTTIRAITDILPKIDVIKDDPFNSHPTDFDLMSEDVRNAIESGESLDITQKNVSMIDLPL 74
Cdd:COG1239    30 IGGVLIRGEKGTAKSTAVRALAALLPPIEVVKGCPYNCDPDDPDELCPDCRERLAAGEELPTETRPVPVVELPL 103
 
Name Accession Description Interval E-value
chlI CHL00081
Mg-protoporyphyrin IX chelatase
 1-74 1.68e-41

Mg-protoporyphyrin IX chelatase


Pssm-ID: 177020 [Multi-domain]  Cd Length: 350  Bit Score: 137.81  E-value: 1.68e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1557899047   1 IGGVIIMGDRGTGKSTTIRAITDILPKIDVIKDDPFNSHPTDFDLMSEDVRNAIESGESLDITQKNVSMIDLPL 74
Cdd:CHL00081   38 IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPL 111
ChlI COG1239
Mg-chelatase subunit ChlI [Coenzyme transport and metabolism];
1-74 5.27e-29

Mg-chelatase subunit ChlI [Coenzyme transport and metabolism];


Pssm-ID: 440852 [Multi-domain]  Cd Length: 344  Bit Score: 104.83  E-value: 5.27e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1557899047   1 IGGVIIMGDRGTGKSTTIRAITDILPKIDVIKDDPFNSHPTDFDLMSEDVRNAIESGESLDITQKNVSMIDLPL 74
Cdd:COG1239    30 IGGVLIRGEKGTAKSTAVRALAALLPPIEVVKGCPYNCDPDDPDELCPDCRERLAAGEELPTETRPVPVVELPL 103
YddA COG4178
ABC-type uncharacterized transport system, permease and ATPase components [General function ...
 3-26 9.79e-03

ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];


Pssm-ID: 443337 [Multi-domain]  Cd Length: 571  Bit Score: 32.47  E-value: 9.79e-03
                          10        20
                  ....*....|....*....|....
gi 1557899047   3 GVIIMGDRGTGKSTTIRAITDILP 26
Cdd:COG4178   391 RLLITGPSGSGKSTLLRAIAGLWP 414
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH