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Conserved domains on  [gi|1580077820|gb|QBF76418|]
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oriT-binding protein [Cloning vector pH3]

Protein Classification

TraK family protein( domain architecture ID 13879444)

TraK family protein is a DUF5338 domain-containing protein; similar to Escherichia coli Protein TraK which is involved in conjugative transfer of plasmids between bacteria

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5338 pfam17273
Family of unknown function (DUF5338); This is a family of unknown function which can be found ...
 7-74 7.73e-27

Family of unknown function (DUF5338); This is a family of unknown function which can be found mostly in Proteobacteria.


:

Pssm-ID: 435830  Cd Length: 69  Bit Score: 96.65  E-value: 7.73e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1580077820   7 DELAEWVESRAAKKR-RRDEAAVAFLAVRADVEAALASGYALVTIWEHMRETGKVKFSYETFRSHARRH 74
Cdd:pfam17273   1 EELAEWIAKRLKKKRsRRDKNRVAFLAVRDDVKAALKAGYALKTIWEHLHETGRIPISYETFRRYVNRY 69
 
Name Accession Description Interval E-value
DUF5338 pfam17273
Family of unknown function (DUF5338); This is a family of unknown function which can be found ...
 7-74 7.73e-27

Family of unknown function (DUF5338); This is a family of unknown function which can be found mostly in Proteobacteria.


Pssm-ID: 435830  Cd Length: 69  Bit Score: 96.65  E-value: 7.73e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1580077820   7 DELAEWVESRAAKKR-RRDEAAVAFLAVRADVEAALASGYALVTIWEHMRETGKVKFSYETFRSHARRH 74
Cdd:pfam17273   1 EELAEWIAKRLKKKRsRRDKNRVAFLAVRDDVKAALKAGYALKTIWEHLHETGRIPISYETFRRYVNRY 69
 
Name Accession Description Interval E-value
DUF5338 pfam17273
Family of unknown function (DUF5338); This is a family of unknown function which can be found ...
 7-74 7.73e-27

Family of unknown function (DUF5338); This is a family of unknown function which can be found mostly in Proteobacteria.


Pssm-ID: 435830  Cd Length: 69  Bit Score: 96.65  E-value: 7.73e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1580077820   7 DELAEWVESRAAKKR-RRDEAAVAFLAVRADVEAALASGYALVTIWEHMRETGKVKFSYETFRSHARRH 74
Cdd:pfam17273   1 EELAEWIAKRLKKKRsRRDKNRVAFLAVRDDVKAALKAGYALKTIWEHLHETGRIPISYETFRRYVNRY 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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