NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1586286500|gb|QBK17541|]
View 

glycoprotein 3 [Equine arteritis virus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
GP3 super family cl03874
Equine arteritis virus GP3; This protein is encoded by ORF3 of equine arteritis virus. The ...
1-161 2.77e-85

Equine arteritis virus GP3; This protein is encoded by ORF3 of equine arteritis virus. The function is unknown.


The actual alignment was detected with superfamily member pfam03076:

Pssm-ID: 281120  Cd Length: 160  Bit Score: 247.29  E-value: 2.77e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586286500   1 MGRTYSGPVAFLCFFLHFFLVSGSVGSNNTTICMHSSSDTSVHLFYAANVAFPSHFQRHFAAAQDFVVHTGYEYAGVTML 80
Cdd:pfam03076   1 MGRAYSGPVALLCFFLYFCFICGSVGSNNTTICMHTTSDTSVHLFYAANVTFPSHFQRHFAAAQDFVVHTGYEYAGVTML 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586286500  81 VHLFANLILTFPSLVNCTHPVSVYANASCVQVVCAHRyPSTTGLGQLSFSFIDEELRLYIRPTLVCWFALLLVHFLPMPR 160
Cdd:pfam03076  81 VHLFANLVLTFPSLVNCSRPVNVFANASCVQVVCSHT-NSTTGLGQLSFSFVDEDLRLHIRPTLICWFALLLVHFLPMPR 159

                  .
gi 1586286500 161 C 161
Cdd:pfam03076 160 C 160
 
Name Accession Description Interval E-value
GP3 pfam03076
Equine arteritis virus GP3; This protein is encoded by ORF3 of equine arteritis virus. The ...
1-161 2.77e-85

Equine arteritis virus GP3; This protein is encoded by ORF3 of equine arteritis virus. The function is unknown.


Pssm-ID: 281120  Cd Length: 160  Bit Score: 247.29  E-value: 2.77e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586286500   1 MGRTYSGPVAFLCFFLHFFLVSGSVGSNNTTICMHSSSDTSVHLFYAANVAFPSHFQRHFAAAQDFVVHTGYEYAGVTML 80
Cdd:pfam03076   1 MGRAYSGPVALLCFFLYFCFICGSVGSNNTTICMHTTSDTSVHLFYAANVTFPSHFQRHFAAAQDFVVHTGYEYAGVTML 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586286500  81 VHLFANLILTFPSLVNCTHPVSVYANASCVQVVCAHRyPSTTGLGQLSFSFIDEELRLYIRPTLVCWFALLLVHFLPMPR 160
Cdd:pfam03076  81 VHLFANLVLTFPSLVNCSRPVNVFANASCVQVVCSHT-NSTTGLGQLSFSFVDEDLRLHIRPTLICWFALLLVHFLPMPR 159

                  .
gi 1586286500 161 C 161
Cdd:pfam03076 160 C 160
 
Name Accession Description Interval E-value
GP3 pfam03076
Equine arteritis virus GP3; This protein is encoded by ORF3 of equine arteritis virus. The ...
1-161 2.77e-85

Equine arteritis virus GP3; This protein is encoded by ORF3 of equine arteritis virus. The function is unknown.


Pssm-ID: 281120  Cd Length: 160  Bit Score: 247.29  E-value: 2.77e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586286500   1 MGRTYSGPVAFLCFFLHFFLVSGSVGSNNTTICMHSSSDTSVHLFYAANVAFPSHFQRHFAAAQDFVVHTGYEYAGVTML 80
Cdd:pfam03076   1 MGRAYSGPVALLCFFLYFCFICGSVGSNNTTICMHTTSDTSVHLFYAANVTFPSHFQRHFAAAQDFVVHTGYEYAGVTML 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1586286500  81 VHLFANLILTFPSLVNCTHPVSVYANASCVQVVCAHRyPSTTGLGQLSFSFIDEELRLYIRPTLVCWFALLLVHFLPMPR 160
Cdd:pfam03076  81 VHLFANLVLTFPSLVNCSRPVNVFANASCVQVVCSHT-NSTTGLGQLSFSFVDEDLRLHIRPTLICWFALLLVHFLPMPR 159

                  .
gi 1586286500 161 C 161
Cdd:pfam03076 160 C 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH