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Conserved domains on  [gi|1608036822|gb|QBX08885|]
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hypothetical protein JavanS30_0014 [Streptococcus satellite phage Javan30]

Protein Classification

primase alpha helix C-terminal domain-containing protein( domain architecture ID 10658736)

primase alpha helix C-terminal domain-containing protein similar to Escherichia coli Rep protein of plasmid ColE2-P9 (34 kDa), an essential initiator for plasmid DNA replication

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PriCT_1 smart00942
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 214-279 3.86e-18

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


:

Pssm-ID: 214926  Cd Length: 66  Bit Score: 76.60  E-value: 3.86e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608036822  214 FNGFGDEGGRNVALTKFVGLLFNKWvDCDLETAYELVQIANS-VTTKPLPIDEIDKTFRSILDTELR 279
Cdd:smart00942   1 FLGGVDEGNRNNTLFRLAGRLLRRG-YVDEEEAYALLLAANSaNCNPPLPERELEKTAESAYRRESR 66
 
Name Accession Description Interval E-value
PriCT_1 smart00942
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 214-279 3.86e-18

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 214926  Cd Length: 66  Bit Score: 76.60  E-value: 3.86e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608036822  214 FNGFGDEGGRNVALTKFVGLLFNKWvDCDLETAYELVQIANS-VTTKPLPIDEIDKTFRSILDTELR 279
Cdd:smart00942   1 FLGGVDEGNRNNTLFRLAGRLLRRG-YVDEEEAYALLLAANSaNCNPPLPERELEKTAESAYRRESR 66
PriCT_1 pfam08708
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 214-274 7.79e-06

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 430166  Cd Length: 64  Bit Score: 42.67  E-value: 7.79e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608036822 214 FNGFGDEGGRNVALTKFVGLLFNKWVDcdLETAYELVQIANSVTTKPLPIDEIDKTFRSIL 274
Cdd:pfam08708   1 TLGPVASGGRNNALFRLAGALARRGID--RESVLALLHALNSNLEPPLDESEVEKTVKSVY 59
 
Name Accession Description Interval E-value
PriCT_1 smart00942
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 214-279 3.86e-18

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 214926  Cd Length: 66  Bit Score: 76.60  E-value: 3.86e-18
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608036822  214 FNGFGDEGGRNVALTKFVGLLFNKWvDCDLETAYELVQIANS-VTTKPLPIDEIDKTFRSILDTELR 279
Cdd:smart00942   1 FLGGVDEGNRNNTLFRLAGRLLRRG-YVDEEEAYALLLAANSaNCNPPLPERELEKTAESAYRRESR 66
PriCT_1 pfam08708
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 214-274 7.79e-06

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 430166  Cd Length: 64  Bit Score: 42.67  E-value: 7.79e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1608036822 214 FNGFGDEGGRNVALTKFVGLLFNKWVDcdLETAYELVQIANSVTTKPLPIDEIDKTFRSIL 274
Cdd:pfam08708   1 TLGPVASGGRNNALFRLAGALARRGID--RESVLALLHALNSNLEPPLDESEVEKTVKSVY 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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