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Conserved domains on  [gi|1608037185|gb|QBX09229|]
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hypothetical protein JavanS325_0021 [Streptococcus satellite phage Javan325]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cys_rich_CPCC super family cl16707
Cysteine-rich CPCC; This family of proteins is functionally uncharacterized. This family of ...
 18-62 5.84e-10

Cysteine-rich CPCC; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 68 and 104 amino acids in length. There are six conserved cysteines and a conserved CPCC sequence motif.


The actual alignment was detected with superfamily member pfam14206:

Pssm-ID: 433773  Cd Length: 75  Bit Score: 51.48  E-value: 5.84e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1608037185  18 CPVCGTEVMD-----YDICDVCRWQNTGI----INIDGGPNKMTLAEAKEAYAR 62
Cdd:pfam14206   3 CPCCGYFTLDerpgsYDICPVCFWEDDGVqlrdPDYPGGANHVSLREAQENFRK 56
 
Name Accession Description Interval E-value
Cys_rich_CPCC pfam14206
Cysteine-rich CPCC; This family of proteins is functionally uncharacterized. This family of ...
 18-62 5.84e-10

Cysteine-rich CPCC; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 68 and 104 amino acids in length. There are six conserved cysteines and a conserved CPCC sequence motif.


Pssm-ID: 433773  Cd Length: 75  Bit Score: 51.48  E-value: 5.84e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1608037185  18 CPVCGTEVMD-----YDICDVCRWQNTGI----INIDGGPNKMTLAEAKEAYAR 62
Cdd:pfam14206   3 CPCCGYFTLDerpgsYDICPVCFWEDDGVqlrdPDYPGGANHVSLREAQENFRK 56
 
Name Accession Description Interval E-value
Cys_rich_CPCC pfam14206
Cysteine-rich CPCC; This family of proteins is functionally uncharacterized. This family of ...
 18-62 5.84e-10

Cysteine-rich CPCC; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 68 and 104 amino acids in length. There are six conserved cysteines and a conserved CPCC sequence motif.


Pssm-ID: 433773  Cd Length: 75  Bit Score: 51.48  E-value: 5.84e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1608037185  18 CPVCGTEVMD-----YDICDVCRWQNTGI----INIDGGPNKMTLAEAKEAYAR 62
Cdd:pfam14206   3 CPCCGYFTLDerpgsYDICPVCFWEDDGVqlrdPDYPGGANHVSLREAQENFRK 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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