NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1608039532|gb|QBX11458|]
View 

ArpU family encoded transcriptional regulator [Streptococcus satellite phage Javan58]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
phage_arpU super family cl11765
phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, ...
 3-119 3.36e-12

phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


The actual alignment was detected with superfamily member TIGR01637:

Pssm-ID: 273725  Cd Length: 132  Bit Score: 58.95  E-value: 3.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608039532   3 KKNAIRKLKEFHRWQRIANSLDLSYNERYQFDIKYHPT-----RREHLEISRECALEELDAIKYAI-NQLSKIdYRKILI 76
Cdd:TIGR01637  11 RANVKRFLEDYRRLRRIAGRSLTPKLSPSLSLEPPSFTnefhsKTEEAAIHNLDAEQEARAIVNAIvNQLDEI-SRQILY 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1608039532  77 ECYLISEKKTQQDIIAELNKSQSWYYETKKRALLEFAQSYRNG 119
Cdd:TIGR01637  90 DKYLEPDQKYDYQIMMELGYSHRQYYRIKKRALLRFATLYGIG 132
 
Name Accession Description Interval E-value
phage_arpU TIGR01637
phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, ...
 3-119 3.36e-12

phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


Pssm-ID: 273725  Cd Length: 132  Bit Score: 58.95  E-value: 3.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608039532   3 KKNAIRKLKEFHRWQRIANSLDLSYNERYQFDIKYHPT-----RREHLEISRECALEELDAIKYAI-NQLSKIdYRKILI 76
Cdd:TIGR01637  11 RANVKRFLEDYRRLRRIAGRSLTPKLSPSLSLEPPSFTnefhsKTEEAAIHNLDAEQEARAIVNAIvNQLDEI-SRQILY 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1608039532  77 ECYLISEKKTQQDIIAELNKSQSWYYETKKRALLEFAQSYRNG 119
Cdd:TIGR01637  90 DKYLEPDQKYDYQIMMELGYSHRQYYRIKKRALLRFATLYGIG 132
 
Name Accession Description Interval E-value
phage_arpU TIGR01637
phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, ...
 3-119 3.36e-12

phage transcriptional regulator, ArpU family; This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]


Pssm-ID: 273725  Cd Length: 132  Bit Score: 58.95  E-value: 3.36e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608039532   3 KKNAIRKLKEFHRWQRIANSLDLSYNERYQFDIKYHPT-----RREHLEISRECALEELDAIKYAI-NQLSKIdYRKILI 76
Cdd:TIGR01637  11 RANVKRFLEDYRRLRRIAGRSLTPKLSPSLSLEPPSFTnefhsKTEEAAIHNLDAEQEARAIVNAIvNQLDEI-SRQILY 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1608039532  77 ECYLISEKKTQQDIIAELNKSQSWYYETKKRALLEFAQSYRNG 119
Cdd:TIGR01637  90 DKYLEPDQKYDYQIMMELGYSHRQYYRIKKRALLRFATLYGIG 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH