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Conserved domains on  [gi|1631824299|gb|QCI08065|]
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cytochrome b6-f complex subunit 8 [Plumaria plumosa]

Protein Classification

cytochrome b6-f complex subunit PetN( domain architecture ID 10509948)

cytochrome b6-f complex subunit PetN is a component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PetN pfam03742
PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or ...
 1-29 4.69e-08

PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.


:

Pssm-ID: 397695  Cd Length: 29  Bit Score: 41.99  E-value: 4.69e-08
                         10        20
                 ....*....|....*....|....*....
gi 1631824299  1 MDIISLGWGSLLAVFTFSIALVVWGRNGF 29
Cdd:pfam03742  1 MDILTLGWAALLAVFTFSIAMVVWGRNGF 29
 
Name Accession Description Interval E-value
PetN pfam03742
PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or ...
 1-29 4.69e-08

PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.


Pssm-ID: 397695  Cd Length: 29  Bit Score: 41.99  E-value: 4.69e-08
                         10        20
                 ....*....|....*....|....*....
gi 1631824299  1 MDIISLGWGSLLAVFTFSIALVVWGRNGF 29
Cdd:pfam03742  1 MDILTLGWAALLAVFTFSIAMVVWGRNGF 29
petN CHL00009
cytochrome b6/f complex subunit VIII
 1-29 1.74e-07

cytochrome b6/f complex subunit VIII


Pssm-ID: 176952  Cd Length: 29  Bit Score: 40.46  E-value: 1.74e-07
                         10        20
                 ....*....|....*....|....*....
gi 1631824299  1 MDIISLGWGSLLAVFTFSIALVVWGRNGF 29
Cdd:CHL00009   1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
PetN COG5683
Cytochrome b6f complex subunit VIII, PetN/Ycf6 [Energy production and conversion];
1-29 2.64e-07

Cytochrome b6f complex subunit VIII, PetN/Ycf6 [Energy production and conversion];


Pssm-ID: 444397  Cd Length: 29  Bit Score: 40.06  E-value: 2.64e-07
                         10        20
                 ....*....|....*....|....*....
gi 1631824299  1 MDIISLGWGSLLAVFTFSIALVVWGRNGF 29
Cdd:COG5683    1 MDILTLGWVALLALFTFSIAMVVWGRNGF 29
 
Name Accession Description Interval E-value
PetN pfam03742
PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or ...
 1-29 4.69e-08

PetN; PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability.


Pssm-ID: 397695  Cd Length: 29  Bit Score: 41.99  E-value: 4.69e-08
                         10        20
                 ....*....|....*....|....*....
gi 1631824299  1 MDIISLGWGSLLAVFTFSIALVVWGRNGF 29
Cdd:pfam03742  1 MDILTLGWAALLAVFTFSIAMVVWGRNGF 29
petN CHL00009
cytochrome b6/f complex subunit VIII
 1-29 1.74e-07

cytochrome b6/f complex subunit VIII


Pssm-ID: 176952  Cd Length: 29  Bit Score: 40.46  E-value: 1.74e-07
                         10        20
                 ....*....|....*....|....*....
gi 1631824299  1 MDIISLGWGSLLAVFTFSIALVVWGRNGF 29
Cdd:CHL00009   1 MDIVSLAWAALMVVFTFSLSLVVWGRSGL 29
PetN COG5683
Cytochrome b6f complex subunit VIII, PetN/Ycf6 [Energy production and conversion];
1-29 2.64e-07

Cytochrome b6f complex subunit VIII, PetN/Ycf6 [Energy production and conversion];


Pssm-ID: 444397  Cd Length: 29  Bit Score: 40.06  E-value: 2.64e-07
                         10        20
                 ....*....|....*....|....*....
gi 1631824299  1 MDIISLGWGSLLAVFTFSIALVVWGRNGF 29
Cdd:COG5683    1 MDILTLGWVALLALFTFSIAMVVWGRNGF 29
PRK14747 PRK14747
cytochrome b6-f complex subunit PetN; Provisional
 1-29 6.53e-05

cytochrome b6-f complex subunit PetN; Provisional


Pssm-ID: 184810  Cd Length: 29  Bit Score: 34.07  E-value: 6.53e-05
                         10        20
                 ....*....|....*....|....*....
gi 1631824299  1 MDIISLGWGSLLAVFTFSIALVVWGRNGF 29
Cdd:PRK14747   1 MDILTLGWVSVLVLFTWSIAMVVWGRNGF 29
petN PRK02529
cytochrome b6-f complex subunit PetN; Provisional
 3-28 1.32e-04

cytochrome b6-f complex subunit PetN; Provisional


Pssm-ID: 134722  Cd Length: 33  Bit Score: 33.30  E-value: 1.32e-04
                         10        20
                 ....*....|....*....|....*.
gi 1631824299  3 IISLGWGSLLAVFTFSIALVVWGRNG 28
Cdd:PRK02529   2 LFTLGWASLAAIFTFSIAMVVWGRNG 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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