NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1707765441|gb|QDP18023|]
View 

NADH dehydrogenase subunit 3 (mitochondrion) [Sphenacris crassicornis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-115 9.42e-40

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 128.36  E-value: 9.42e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   5 IFSFSMSIIIPTMVMIIASCLSNKNINDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSS 84
Cdd:MTH00161    3 LIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTS 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1707765441  85 NLMIWTMSSITFLVILLGGLYHEWNQGALQW 115
Cdd:MTH00161   83 NMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-115 9.42e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 128.36  E-value: 9.42e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   5 IFSFSMSIIIPTMVMIIASCLSNKNINDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSS 84
Cdd:MTH00161    3 LIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTS 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1707765441  85 NLMIWTMSSITFLVILLGGLYHEWNQGALQW 115
Cdd:MTH00161   83 NMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.64e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 96.72  E-value: 1.64e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441  19 MIIASCLSNKNINdREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSSNLM-IWTMssITFL 97
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFgFVEM--LIFI 77

                          90
                  ....*....|....*..
gi 1707765441  98 VILLGGLYHEWNQGALQ 114
Cdd:pfam00507  78 AILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-115 3.80e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 88.64  E-value: 3.80e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441  11 SIIIPTMVMIIASCLSNKNiNDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSSNLM-IW 89
Cdd:COG0838    15 ALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFgLI 93

                          90       100
                  ....*....|....*....|....*.
gi 1707765441  90 TMssITFLVILLGGLYHEWNQGALQW 115
Cdd:COG0838    94 EM--LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 5-115 9.42e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 128.36  E-value: 9.42e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   5 IFSFSMSIIIPTMVMIIASCLSNKNINDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSS 84
Cdd:MTH00161    3 LIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTS 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1707765441  85 NLMIWTMSSITFLVILLGGLYHEWNQGALQW 115
Cdd:MTH00161   83 NMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 1.50e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 125.36  E-value: 1.50e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   1 MMTSIFSFSMSIIIPTMVMIIASCLSNKNINDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1707765441  81 MKSSNLMIWTMSSITFLVILLGGLYHEWNQGALQWAE 117
Cdd:MTH00148   81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 1.09e-37

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 123.18  E-value: 1.09e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   1 MMTSIFSFSMSIIIPTMVMIIASCLSNKNINDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1707765441  81 MKSSNLMIWTMSSITFLVILLGGLYHEWNQGALQWAE 117
Cdd:MTH00202   81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 1.40e-32

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 110.33  E-value: 1.40e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   1 MMTSIFSFSMSIIIPTMVMIIASCLSNKNINDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1707765441  81 MKSSNLMIWTMSSITFLVILLGGLYHEWNQGALQWA 116
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 2-117 3.64e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 106.56  E-value: 3.64e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   2 MTSIFSFSMSIIIPTMVMIIASCLSNKNINdREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIM 81
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1707765441  82 KSSNLMIWTMSSITFLVILLGGLYHEWNQGALQWAE 117
Cdd:MTH00106   80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-117 9.31e-30

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 103.14  E-value: 9.31e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   1 MMTSIFSFSMSIIIPTMVMIIASCLSNKNInDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00042    1 MTNLIFFLLIILILTSLLLLAGHFLPSRSP-DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1707765441  81 MKSSNLMIWTMSSITFLVILLGGLYHEWNQGALQWAE 117
Cdd:MTH00042   80 TLITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-116 5.77e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 98.41  E-value: 5.77e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   2 MTSIFSFSMSIIIPTMVMIIASCLSNKNiNDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIM 81
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTK-PDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAI 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1707765441  82 KSSNLMIWTMSSITFLVILLGGLYHEWNQGALQWA 116
Cdd:MTH00113   80 NLTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 1.64e-27

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 96.72  E-value: 1.64e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441  19 MIIASCLSNKNINdREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSSNLM-IWTMssITFL 97
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFgFVEM--LIFI 77

                          90
                  ....*....|....*..
gi 1707765441  98 VILLGGLYHEWNQGALQ 114
Cdd:pfam00507  78 AILLVGLVYAWKKGALE 94
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-115 4.01e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 93.81  E-value: 4.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   1 MMTSIFSFSMSIIIpTMVMIIASCLSNKNINDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00203    1 MNLIMLFFLIALLL-SLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1707765441  81 MKSSNlmIWTMSSITFLVILLGGLYHEWNQGALQW 115
Cdd:MTH00203   80 NQLSS--LSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 32-117 8.21e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 93.06  E-value: 8.21e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441  32 DREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSSNLMIWTMSSITFLVILLGGLYHEWNQG 111
Cdd:MTH00136   31 DHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLIYEWLQG 110


                  ....*.
gi 1707765441 112 ALQWAE 117
Cdd:MTH00136  111 GLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 10-117 1.08e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 92.75  E-value: 1.08e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441  10 MSIIIPTMVMIIASCLSNKNiNDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPI---VIIMKSSNL 86
Cdd:MTH00069    8 ISTILSLILITISFWLPLNN-PDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNTPTNT 86

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1707765441  87 MIWtmsSITFLVILLGGLYHEWNQGALQWAE 117
Cdd:MTH00069   87 LFW---STLILILLTLGLIYEWIQGGLEWAE 114
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-115 3.80e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 88.64  E-value: 3.80e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441  11 SIIIPTMVMIIASCLSNKNiNDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSSNLM-IW 89
Cdd:COG0838    15 ALGLALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFgLI 93

                          90       100
                  ....*....|....*....|....*.
gi 1707765441  90 TMssITFLVILLGGLYHEWNQGALQW 115
Cdd:COG0838    94 EM--LVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 11-116 1.21e-22

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 85.30  E-value: 1.21e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441  11 SIIIPTMVMIIASCLSNKNiNDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILP-IVIIMKSSNLMIW 89
Cdd:PRK06602   18 AIGLGILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPwAVSFREIGWLGFV 96

                          90       100
                  ....*....|....*....|....*..
gi 1707765441  90 TMssITFLVILLGGLYHEWNQGALQWA 116
Cdd:PRK06602   97 EA--MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 5-115 1.21e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 74.71  E-value: 1.21e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   5 IFSFSMSIIIptmvmIIASCLSNKNINDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSS 84
Cdd:MTH00018    8 IFSVVLSALF-----SGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1707765441  85 NLM-IWTMssITFLVILLGGLYHEWNQGALQW 115
Cdd:MTH00018   83 APFgFWTM--VGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 2-115 1.64e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 74.36  E-value: 1.64e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   2 MTSIFSFSMSIIIPTMVMIIASCLSNKNINDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIM 81
Cdd:MTH00055    5 FLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVY 84

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1707765441  82 KSSNLM-IWTMssITFLVILLGGLYHEWNQGALQW 115
Cdd:MTH00055   85 NQIGLFgFWVM--YLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 3-115 1.69e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 69.58  E-value: 1.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   3 TSIFSFSMSIIIPTMVMIIASCLSNKNIN----DREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIV 78
Cdd:MTH00030    7 TIFFSTLLGVGIILLLVSISFTLGNSRIGltkpDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWS 86

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1707765441  79 IIMKSSNLM-IWTMssITFLVILLGGLYHEWNQGALQW 115
Cdd:MTH00030   87 IVFNQLNLFsFWIV--YTFLIVLAIGLAYEWIKGGLEW 122
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
1-115 1.06e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 49.36  E-value: 1.06e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   1 MMTSIFSFsMSIIIPTMVMIIASCLsNKNINDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVII 80
Cdd:PRK07756   10 MIVLIFLL-LGILLPVVALTLGRML-RPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVA 87

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1707765441  81 MKSSNLMIwTMSSITFLVILLGGLYHEWNQGALQW 115
Cdd:PRK07756   88 YDKLGLFA-LIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
5-115 1.29e-08

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 49.28  E-value: 1.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   5 IFSFSMSIIIPTMVMIIASCLSNKNiNDREKSSPFECGFDPKSSARmSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSS 84
Cdd:PRK08489   18 VLTFVAFFLTTRLARFISRKLAQKN-TEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFKLL 95

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1707765441  85 NLMIWtMSSITFLVILLGGLYHEWNQGALQW 115
Cdd:PRK08489   96 GLFGL-IEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 4.32e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 44.88  E-value: 4.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441   1 MMTSIFSFSMSIIIPTMVMIIASCLSNKNiNDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVII 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1707765441  81 MKSSNLMIWtmssiTFLVILLGGLYHEWNQGALQW 115
Cdd:MTH00092   80 DFSSLISFF-----MLMIFIFFGFYMEWWYGKLIW 109
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 19-115 6.37e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 44.66  E-value: 6.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441  19 MIIASCLSNKNINdREKSSPFECGFDPKSSAR--MSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSsnLMIWTMSSIT- 95
Cdd:PRK07928   22 VVVASLVGPKRYN-RAKLEAYECGIEPTPQPAggGRFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDA--LGVFGLVEMAl 98

                          90       100
                  ....*....|....*....|
gi 1707765441  96 FLVILLGGLYHEWNQGALQW 115
Cdd:PRK07928   99 FMLTVFVAYAYVWRRGGLEW 118
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-115 8.30e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 39.41  E-value: 8.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765441  32 DREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALILPIVIIMKSSNLMIWtMSSITFLVILLGGLYHEWNQG 111
Cdd:PRK06432   60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPF-IETLIFLAMPLFAVYYAFKMG 138


                  ....
gi 1707765441 112 ALQW 115
Cdd:PRK06432  139 YMRW 142
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 30-75 1.18e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.34  E-value: 1.18e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1707765441  30 INDREKSSPFECGFDPKSSARMSFSIQFFLIAVIFLIFDIEIALIL 75
Cdd:MTH00060   32 SGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLL 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH