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Conserved domains on  [gi|1707765443|gb|QDP18025|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Sphenacris crassicornis]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 1.78e-155

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 447.68  E-value: 1.78e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFYKFWWLFHSLFFLISFAFMLNFYFLSDFNMISYFLGVDYFSFSLILLSFWICSLMLTSSSSIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  81 NSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 161 VNKFIGSLFFPLFVDFGSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 241 LGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 321 IYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1707765443 401 YSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFLKSVYFYI 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 1.78e-155

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 447.68  E-value: 1.78e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFYKFWWLFHSLFFLISFAFMLNFYFLSDFNMISYFLGVDYFSFSLILLSFWICSLMLTSSSSIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  81 NSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 161 VNKFIGSLFFPLFVDFGSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 241 LGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 321 IYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1707765443 401 YSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFLKSVYFYI 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-399 2.48e-57

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 196.07  E-value: 2.48e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  48 ISYFLGVDYFSFSLILLSFWIcsLMLTSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALL--TPLAILASWNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 128 LGWGYqPERLQAGVYLIFYTLVASLPLLLVLF--KVNKFIGSLFFPLFVDFG---SFYFFFYLFMILAFLVKMPMFLFHL 202
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILalYFLAGALTFDIAELAAAPlplTAQLLLFLAFFIAFAVKVPMFPFHT 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSK-FNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAH 281
Cdd:COG1008   231 WLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEASAyFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSH 310

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 282 MSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSL 361
Cdd:COG1008   311 MGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTS 390

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1707765443 362 NLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMY 399
Cdd:COG1008   391 GFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 106-379 3.19e-51

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 174.81  E-value: 3.19e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 106 SMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSLFFPLFVDFGSFY----- 180
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 181 -FFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVI 259
Cdd:pfam00361  81 lLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 260 VSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGLIN 338
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1707765443 339 LMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFY 379
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWI 281
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 31-399 6.10e-48

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 170.89  E-value: 6.10e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  31 ISFAFMLNFYFLSDFNmISYFLGVDYFSFSLILLSFWIcsLMLTSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLL 110
Cdd:TIGR01972  53 SGFQFTEDIPWIPALG-ISYHLGVDGISLLLVLLTALL--TLLAILASWESIQKRVKEFYALLLLLEAGVIGVFLALDLF 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 111 MFYIFFEASLIPTLLLILGWGyQPERLQAGVYLIFYTLVASLpLLLVLFKVNKFIGSLFF------PLFVDFGSFYFFFY 184
Cdd:TIGR01972 130 LFYVFWEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSL-LMLLAILGLYFLGGGTFdllellNLPLPFGVQTWLFL 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 185 LFMIlAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSK-FNYFWLSLSLSGGVIVSFV 263
Cdd:TIGR01972 208 AFFI-AFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLyFAPVLAALGVIAIIYGALI 286

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 264 CFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGM 343
Cdd:TIGR01972 287 ALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVL 366

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1707765443 344 SFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMY 399
Cdd:TIGR01972 367 AAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 1.78e-155

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 447.68  E-value: 1.78e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFYKFWWLFHSLFFLISFAFMLNFYFLSDFNMISYFLGVDYFSFSLILLSFWICSLMLTSSSSIY 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  81 NSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 161 VNKFIGSLFFPLFVDFGSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMF 240
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 241 LGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNI 320
Cdd:MTH00163  241 LGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANI 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 321 IYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMYS 400
Cdd:MTH00163  321 IYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1707765443 401 YSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFLKSVYFYI 444
Cdd:MTH00163  401 YSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 47-442 7.57e-117

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 347.98  E-value: 7.57e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  47 MISYFLGVDYFSFSLILLSFWICSLMLTSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLL 126
Cdd:MTH00150   15 SLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLL 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 127 ILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSLFFPLFVDFGSFYF---FFYLFMILAFLVKMPMFLFHLW 203
Cdd:MTH00150   95 ILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSsmgLWGLLVFLAFLVKLPMYPFHLW 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 204 LPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMS 283
Cdd:MTH00150  175 LPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMS 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 284 MVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNL 363
Cdd:MTH00150  255 LVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNL 334

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1707765443 364 AGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMYSYSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFLKSVYF 442
Cdd:MTH00150  335 LSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLL 413
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-439 8.45e-115

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 344.03  E-value: 8.45e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFYKFWWL---FHSLFFLISFAFMLNFYFLSDFNMISYFLGVDYFSFSLILLSFWICSLMLTSSS 77
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWaltFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  78 SIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLV 157
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 158 LFKVNKFIGSLFFPLF-VDFGSFYF--FFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV 234
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSsMEPPSIYLmnLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 235 MSIIMFLGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGL 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 315 FCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1707765443 395 TLYMYSYSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFLKS 439
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKP 445
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-444 4.18e-112

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 336.95  E-value: 4.18e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFYKFWWLFHSLFFLISFAFMLNFY-FLSDFNMISYFLGVDYFSFSLILLSFWICSLMLTSSSSI 79
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSnSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  80 YNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLF 159
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 160 KVNKFIGSLFFPLFVDFGSFYFFFYLFMI---LAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMS 236
Cdd:MTH00205  161 FLNSLNFSLSMFFNFPLNFSDFYLFLYWIflmLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 237 IIMFLGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFC 316
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 317 LSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTL 396
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1707765443 397 YMYSYSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFLKSVYFYI 444
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-438 4.65e-110

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 332.16  E-value: 4.65e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFYKFWWLF-----HSLFF-LISFAFMLNFYFLSDFNmiSYFLGVDYFSFSLILLSFWICSLMLT 74
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLSKPKFLWtntttYSLLIaLLSLQWLKPPYYPTKNL--TQWLGIDQISAPLLVLSCWLLPLMIL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  75 SSSSIYNS--FSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASL 152
Cdd:MTH00124   79 ASQNHLQHepLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 153 PLLLVLFKVNKFIGSLFFPLFVDFGSF------YFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKL 226
Cdd:MTH00124  159 PLLIAILYLHNQTGTLSLPMLQLTHPTltnswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 227 GGYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIG 306
Cdd:MTH00124  239 GGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIA 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMF 386
Cdd:MTH00124  319 HGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGL 398

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1707765443 387 LSFFSAVYTLYMYSYSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFLK 438
Cdd:MTH00124  399 ATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILK 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-437 7.42e-106

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 321.54  E-value: 7.42e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFYKFWWLFHSLFFLISFAFMLNFYFL-----SDFNMISYFLGVDYFSFSLILLSFWIC--SLML 73
Cdd:MTH00044    1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLnnhwsSSWHNLSLSLATDSLSSPLIILSCWLAplSLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  74 TSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLP 153
Cdd:MTH00044   81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 154 LLLVLFKVNKFIGSLFFPLF------VDFGSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00044  161 LLISLIAIYSSSSSLSIPLSelnwltSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 228 GYGIFRVMSIIMFLGSKF-NYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIG 306
Cdd:MTH00044  241 GYGLIRLINLFSLPSANNiSFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMF 386
Cdd:MTH00044  321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1707765443 387 LSFFSAVYTLYMYSYSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFL 437
Cdd:MTH00044  401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIII 451
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 6-438 1.24e-104

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 318.40  E-value: 1.24e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   6 FMLFFMIPLSFFYKFWWLFHSLFFLISFAFMLNFYFLS-DFNMISYFLGVDYFSFSLILLSFWICSLML--TSSSSIYNS 82
Cdd:MTH00068    9 LMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSeTMNFTNKYFGIDQISSPLLILTCWLLPLMIlaSQNHLKNEP 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  83 FSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVN 162
Cdd:MTH00068   89 INRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPLLIALLILQ 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 163 KFIGSLFFPLFVDFGSFYFF------FYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMS 236
Cdd:MTH00068  169 NSLGSLSLILLELMSPMQLMtytnkiWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISI 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 237 IIMFLGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFC 316
Cdd:MTH00068  249 LLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFC 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 317 LSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTL 396
Cdd:MTH00068  329 LANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITAAYTL 408

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1707765443 397 YMYSYSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFLK 438
Cdd:MTH00068  409 YMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILK 450
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-437 1.18e-100

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 307.97  E-value: 1.18e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFYKFWWLF-----HSLffLISFAFMLNFYFLSDFNM-ISYFLGVDYFSFSLILLSFWICSLML- 73
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIWintttYSL--LISLISLLLLNQPNDNSLnFSLLFFSDSLSTPLLILTTWLLPLMLm 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  74 -TSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASL 152
Cdd:MTH00110   79 aSQHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 153 PLLLVLFKVNKFIGSLFFPLF------VDFGSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKL 226
Cdd:MTH00110  159 PLLVALLYIQNNLGSLNFLLLqlwaqpLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 227 GGYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIG 306
Cdd:MTH00110  239 GGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIA 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMF 386
Cdd:MTH00110  319 HGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGL 398

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1707765443 387 LSFFSAVYTLYMYSYSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFL 437
Cdd:MTH00110  399 NMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSL 449
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 5-438 1.00e-95

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 295.31  E-value: 1.00e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   5 LFMLFFMIPLSFFYKFWWLFHSLFFLISFAFMLNFYFLSDFNMIS--YFLGVDYFSFSLILLSFWICSLML--TSSSSIY 80
Cdd:MTH00206    6 LIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFsnLYLSYDPLSSPLVILSCWLLPLMFlaSQNHMKN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  81 NSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFK 160
Cdd:MTH00206   86 EPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 161 VNKFIGSLFFPLF---VDFGSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSI 237
Cdd:MTH00206  166 LQNSLGSLSLYILyfsKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 238 IMFLGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCL 317
Cdd:MTH00206  246 LGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 318 SNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLY 397
Cdd:MTH00206  326 ANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLY 405

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1707765443 398 MYSYSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFLK 438
Cdd:MTH00206  406 MFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILN 446
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-438 2.07e-86

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 271.44  E-value: 2.07e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFYKFWWLF-----HSLFFLISFAFMLNFYFLSDFNMISYFLGVDYFSFSLILLSFWICSLMLTS 75
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLWtttlaHSLLIALASLTWLKNLSETGWSSLNLYMATDPLSTPLLVLTCWLLPLMILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  76 SSSIYNSFSYSGLFSFMILF--LMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLP 153
Cdd:MTH00127   81 SQNHTAPEPINRQRMYITLLtsLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 154 LLLVLFKVNKFIGSL------FFPLFVDFGSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLG 227
Cdd:MTH00127  161 LLVALLLLQNSTGTLsmltlqYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 228 GYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGH 307
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 308 GLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFL 387
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1707765443 388 SFFSAVYTLYMYSYSQHGKYYSGFYSFSLGYFREYHLLVLHWLPLNLLFLK 438
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILK 451
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 48-399 2.48e-57

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 196.07  E-value: 2.48e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  48 ISYFLGVDYFSFSLILLSFWIcsLMLTSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLI 127
Cdd:COG1008    74 ISYHLGVDGISLPLVLLTALL--TPLAILASWNEIKKRPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLI 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 128 LGWGYqPERLQAGVYLIFYTLVASLPLLLVLF--KVNKFIGSLFFPLFVDFG---SFYFFFYLFMILAFLVKMPMFLFHL 202
Cdd:COG1008   152 GIWGG-ERRIYAAIKFFLYTLAGSLLMLVAILalYFLAGALTFDIAELAAAPlplTAQLLLFLAFFIAFAVKVPMFPFHT 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSK-FNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAH 281
Cdd:COG1008   231 WLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEASAyFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSH 310

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 282 MSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSL 361
Cdd:COG1008   311 MGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTS 390

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1707765443 362 NLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMY 399
Cdd:COG1008   391 GFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 48-399 3.50e-53

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 185.41  E-value: 3.50e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  48 ISYFLGVDYFSFSLILLSfwicSLMLTSSSSIYNSFSYSGLFSFMILFLMI--MLYCSFSSMSLLMFYIFFEASLIPTLL 125
Cdd:PRK05846   74 ISYHLGVDGISLLLVVLT----ALLTPLAVLASWEEIKKRVKFYMAALLWLegGVIGVFAALDLLLFYVFFEAMLIPMYF 149

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 126 LILGWGYqPERLQAGVYLIFYTLVASLPLLLVLFkvnkfigSLFFPLFVDFGSF---------------YFFFYLFMIlA 190
Cdd:PRK05846  150 LIGVWGG-KNRIYAATKFFLYTLLGSLLMLVAII-------YLVVVYYNATGTFdiadllnlplppgvqYWLFLAFFI-A 220

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 191 FLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSK-FNYFWLSLSLSGGVIVSFVCFRQVD 269
Cdd:PRK05846  221 FAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHeFAPIIITLGVIAIIYGALVALAQTD 300

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 270 LKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFL 349
Cdd:PRK05846  301 IKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLF 380

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 1707765443 350 LSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMY 399
Cdd:PRK05846  381 FAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLY 430
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 106-379 3.19e-51

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 174.81  E-value: 3.19e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 106 SMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSLFFPLFVDFGSFY----- 180
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 181 -FFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVI 259
Cdd:pfam00361  81 lLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 260 VSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLS-NIIYERLGSRSLLINKGLIN 338
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1707765443 339 LMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFY 379
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWI 281
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 89-399 5.67e-50

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 176.40  E-value: 5.67e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  89 FSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSL 168
Cdd:MTH00217  111 FLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTT 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 169 FFP----LFVDFGSFYFFFYLFMiLAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSK 244
Cdd:MTH00217  191 DYQalccLKIEKELQYFIFLGFF-LSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASE 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 245 -FNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYE 323
Cdd:MTH00217  270 yFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYE 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1707765443 324 RLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMY 399
Cdd:MTH00217  350 RHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 89-399 2.29e-48

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 172.17  E-value: 2.29e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  89 FSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSL 168
Cdd:MTH00204  114 FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTT 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 169 FFPLFVDFGSFY---FFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSK- 244
Cdd:MTH00204  194 DYQILLNIKLPLsiqKWLLVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEy 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 245 FNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYER 324
Cdd:MTH00204  274 FAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYER 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1707765443 325 LGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMY 399
Cdd:MTH00204  354 HHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLY 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 31-399 6.10e-48

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 170.89  E-value: 6.10e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  31 ISFAFMLNFYFLSDFNmISYFLGVDYFSFSLILLSFWIcsLMLTSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLL 110
Cdd:TIGR01972  53 SGFQFTEDIPWIPALG-ISYHLGVDGISLLLVLLTALL--TLLAILASWESIQKRVKEFYALLLLLEAGVIGVFLALDLF 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 111 MFYIFFEASLIPTLLLILGWGyQPERLQAGVYLIFYTLVASLpLLLVLFKVNKFIGSLFF------PLFVDFGSFYFFFY 184
Cdd:TIGR01972 130 LFYVFWEAMLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSL-LMLLAILGLYFLGGGTFdllellNLPLPFGVQTWLFL 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 185 LFMIlAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSK-FNYFWLSLSLSGGVIVSFV 263
Cdd:TIGR01972 208 AFFI-AFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLyFAPVLAALGVIAIIYGALI 286

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 264 CFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGM 343
Cdd:TIGR01972 287 ALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVL 366

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1707765443 344 SFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMY 399
Cdd:TIGR01972 367 AAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 89-397 3.60e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 166.64  E-value: 3.60e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  89 FSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSL 168
Cdd:MTH00226  133 FLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTT 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 169 FFPLFVDF-----GSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGS 243
Cdd:MTH00226  213 DYLTLASCshvvsEQTQKWIFLGIFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGA 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 244 K-FNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIY 322
Cdd:MTH00226  293 QnLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILY 372

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1707765443 323 ERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLY 397
Cdd:MTH00226  373 DRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 23-419 1.14e-42

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 155.06  E-value: 1.14e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  23 LFHSLFFLISFAFMLNFYFLSDFNMISYFLGVDYFSFSLillsfwiCSLMLTSSSSIYNSFSYSGLFSFMILFLMIMLYC 102
Cdd:MTH00094    5 FFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVL-------LIFMMVFILGLVLLSEKNFNLLILSNLLILICLL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 103 SFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSLFFPLFVDfgsfyFF 182
Cdd:MTH00094   78 FFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLS-----WE 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 183 FYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLgskFNYFWLSLSLSGGVIVSF 262
Cdd:MTH00094  153 MFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMILSSF 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 263 VCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPG 342
Cdd:MTH00094  230 CCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMF 309

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1707765443 343 MSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFYMFFMLMFLSFFSAVYTLYMYSYSQHGKYYSGFYSFSLGYF 419
Cdd:MTH00094  310 FGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLS 386
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 95-375 8.09e-34

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 132.46  E-value: 8.09e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  95 FLMIMLYCS----FSSMSLLMFYIFFEASLIPTLLLILGWGYQpERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSLFF 170
Cdd:PRK12561   91 FLMLVLYSAqigvFLAQDLLLFFLMWELELVPVYLLISIWGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTF 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 171 PL----FVDF-GSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRvMSIIMfLGSKF 245
Cdd:PRK12561  170 DLaelgAKSYpLALELLLYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIR-FNVQM-LPDAH 247

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 246 NYFWLSLSLSGGV-IV--SFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIY 322
Cdd:PRK12561  248 VYFAPALAILGVVnIIygALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTY 327

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1707765443 323 ERLGSRSLLINKGLINLMPgMSFWWFLLSS-SNIAAPPSLNLAGEFSLMNGIIS 375
Cdd:PRK12561  328 ERTHTLSIPNMGGLAKVMP-KTFALFTASSmASLALPGMSGFVSELTVFLGITS 380
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 52-379 6.91e-28

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 114.86  E-value: 6.91e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  52 LGVDYFSFSLILLSFWICSLMLTSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWG 131
Cdd:COG0651    72 LVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGG 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 132 YqPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSLFFPLF------VDFGSFYFFFyLFMILAFLVKMPMFLFHLWLP 205
Cdd:COG0651   152 T-KEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaeLDPGLLLAAF-ALLLVGFGIKAALFPLHFWLP 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 206 KAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVIV--SFVCFRQVDLKSLIAYSSVAHMS 283
Cdd:COG0651   230 DAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADPALFLGTLLLVLGLLTMLvgALGALAQRDLKRLLAYSSVSQIG 309

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 284 MVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNL 363
Cdd:COG0651   310 YILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGF 389

                         330
                  ....*....|....*.
gi 1707765443 364 AGEFSLMNGIISWSFY 379
Cdd:COG0651   390 VSKWLLLQAALEAGAW 405
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 52-358 3.22e-26

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 110.95  E-value: 3.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  52 LGVDYFSFSLILLSFWICSLMLtssSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWG 131
Cdd:PRK02546   83 VGADGLSMPLILLTGFITTLAV---LAAWPVTFKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWG 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 132 YQpERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSLFFPLFV----DFG-SFYFFFYLFMILAFLVKMPMFLFHLWLPK 206
Cdd:PRK02546  160 GK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTAlaakDFGlGFQLLCYAGLLIAYGVKLPIVPLHTWLPD 238

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 207 AHVEAPISGSMILAGVLLKLGGYGIFRvMSIIMF--LGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSM 284
Cdd:PRK02546  239 AHGEATAPVHMLLAGILLKMGGYALLR-MNAGMLpdAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGF 317

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1707765443 285 VIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAP 358
Cdd:PRK02546  318 VLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALP 391
ndhD CHL00011
NADH dehydrogenase subunit 4
 28-379 5.90e-26

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 110.03  E-value: 5.90e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  28 FFLISFAFMLNFYF-------LSDFNMISYF-----LGVDYFSFSLILLSFWICSLMLTSSSSIYNSfsysglfSFMILF 95
Cdd:CHL00011   44 LLLTTYAFCYHFQLddpliqlKEDYKWINFFdfhwrLGIDGLSIGPILLTGFITTLATLAAWPVTRN-------SRLFYF 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  96 LMIMLYC----SFSSMSLLMFYIFFEASLIPTLLLILGWGYQpERLQAGVYLIFYTLVASLPLLLVLFKVNkFIGS---- 167
Cdd:CHL00011  117 LMLAMYSgqigLFSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVLGMG-LYGSnept 194

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 168 LFFPLFVDFG---SFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRV-MSIIMFLGS 243
Cdd:CHL00011  195 LNFETLANQSypvALEILFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHS 274

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 244 KFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYE 323
Cdd:CHL00011  275 IFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYD 354

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1707765443 324 RLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFY 379
Cdd:CHL00011  355 RIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKY 410
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
48-350 1.80e-24

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 105.55  E-value: 1.80e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  48 ISYFLGVDYFSFSLILLSfwiCSLMLTSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLI 127
Cdd:PRK06473   71 LSYHLGVDGLSLPLLVLN---SLLTLIAIYSSDESIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 128 LGWGYQpERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSLFFPLFVDFG-----SFYFFFYLFMILAFLVKMPMFLFHL 202
Cdd:PRK06473  148 AIWGGQ-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRShtlplSTQLLLLAPILVGFGIKIPLVPFHT 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVIVSFVC-FRQVDLKSLIAYSSVAH 281
Cdd:PRK06473  227 WLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCaIAQKDMKKMVAYSSIGH 306

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1707765443 282 MSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLL 350
Cdd:PRK06473  307 MGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLLNPERGLPITGSLM 375
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 20-369 2.10e-21

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 95.76  E-value: 2.10e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  20 FWWLFHSLFFLISFAFMLNFYFLSDFNMISYFLGV---DYFSFSLILLSFWICSLMLTSSSSIYNSFSYSGLFSFMILFL 96
Cdd:MTH00062    1 FYFFSVGFFLGFLLLLLFCLLYSSGVGCCILVVNNvfnGLFIFDSLSFYLILLVLFLGLYSQVMFYNLLSGVSRFFLFLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  97 MIMLYCSFSSMSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSLFFPLFVDF 176
Cdd:MTH00062   81 LIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 177 GSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSiimFLGSKFNYFWLSLSLSG 256
Cdd:MTH00062  161 DSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCG---FIFSGSFLGYLFLCCLF 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 257 GVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGL 336
Cdd:MTH00062  238 SVFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSG 317

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1707765443 337 INLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSL 369
Cdd:MTH00062  318 INGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFL 350
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
48-372 2.22e-19

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 90.16  E-value: 2.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  48 ISYFLGVDYFSFSLILLSfwiCSLMLTSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLI 127
Cdd:PRK07363   71 LSYSLGVDGLSLPLLVLN---SLLTWIAIYSIGENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLI 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 128 LGWGYQpERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSLFF---PLFVDFGSFYFFFYLF--MILAFLVKMPMFLFHL 202
Cdd:PRK07363  148 AIWGGE-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFdydAISTQNLSLNTQLILLtgLLLGFGIKIPLVPLHT 226

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 203 WLPKAHVEAPISGSMILAGVLLKLGGYGIFRvMSIIMFlGSKFNYFWLSLSLSGGVIV---SFVCFRQVDLKSLIAYSSV 279
Cdd:PRK07363  227 WLPDAYTEASPAVAILLGGVLAKLGTYGLLR-FGLQLF-PQTWSLVAPGLAIIGTISViygALSAIAQKDIKRMVAYSSI 304

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 280 AHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAA-- 357
Cdd:PRK07363  305 GHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASag 384

                         330
                  ....*....|....*.
gi 1707765443 358 -PPSLNLAGEFSLMNG 372
Cdd:PRK07363  385 iPGLVGFVAEFIVFQG 400
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 91-375 3.83e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 77.23  E-value: 3.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  91 FMILFLMIM--LYCSFSSMSLLMFYIFFEASLIPTLLLIlGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSL 168
Cdd:PRK08375  108 FYALFLLLLagLLGALLTADLFNLFVFLEIMSLSSYALV-AMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTL 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 169 FF-----------PLFVDFGsfyfffylFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSI 237
Cdd:PRK08375  187 NMadlagalaenpTVVTAFG--------FVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFT 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 238 IMFLGSKFNYFWLS----LSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSG 313
Cdd:PRK08375  259 VFGGDFRFALGLGWllavLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGA 338

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1707765443 314 LFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIIS 375
Cdd:PRK08375  339 LFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVE 400
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 181-379 6.05e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 76.55  E-value: 6.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 181 FFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSKFNYFWLSLS------- 253
Cdd:PRK12667  223 GVALALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSLIDFRAALSpiliilg 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 254 LSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLIN 333
Cdd:PRK12667  303 AVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDEL 382

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1707765443 334 KGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFY 379
Cdd:PRK12667  383 AGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFY 428
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 186-367 1.85e-14

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 74.97  E-value: 1.85e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 186 FMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSII------MFLGSKFNYFWLsLSLsggVI 259
Cdd:PRK06458  219 FLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIdaaigsDFPGRLLLIFGL-LSV---LV 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 260 VSFVCFRQVDLKSLIAYSSVAHMSMV-----IGGLMsmnwwGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINK 334
Cdd:PRK06458  295 AAFFLLRQRDIKRLFAYSSIEHMGLIafalgIGGPL-----GIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIR 369

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1707765443 335 GLINLMPGMSfWWFLLSSSNIA-APPSLNLAGEF 367
Cdd:PRK06458  370 GLLKVSPLTG-WGLMLGALAIAgMPPFGVFISEF 402
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-341 2.24e-14

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 75.03  E-value: 2.24e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFY-KFWWLFHSLFFLISFAFMLNFYF-LSDFNMISYFLGVDYFS--FSLILLSFWICSLMLTSS 76
Cdd:PRK08668    3 LTLLLLTPLIGSVLAYLLkKINEKIGVIGNALPLLFLIKLYFtLKVGTGEKLTLFFGGFKltFTLTHLSWFFAMISLLVI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  77 SSIYNSFSYSGL-----FSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILgWGYQPERLQAGVYLIFYTLVAS 151
Cdd:PRK08668   83 FSVAFFMVSEKTkndayFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVP-MGKKESRKASLKYFVLSAIGAY 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 152 LPLLLVLFKVNKFiGSLFFPLFVDF------GSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLK 225
Cdd:PRK08668  162 AMLYAIFLIYAKT-GTFDFADISQGlindtsTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSK 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 226 LGGYGIFRVMSIIMFLG-----------SKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNW 294
Cdd:PRK08668  241 LGAYGFLLVLYVLPGTKlfsefgtyrgvPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTS 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1707765443 295 WGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMP 341
Cdd:PRK08668  321 LGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKISEMGGLIEKMP 367
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 88-369 6.22e-13

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 70.53  E-value: 6.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  88 LFSFMILFLMIMLYCSFSSmSLLMFYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGS 167
Cdd:PRK08667  113 LSALTALFILSMLGVVASA-NTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGS 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 168 LFFPLFVDFGSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSKFNY 247
Cdd:PRK08667  192 FELSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGV 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 248 FWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLM-----------IGHGLCSSGLFC 316
Cdd:PRK08667  272 LILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFL 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1707765443 317 LSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSL 369
Cdd:PRK08667  352 TAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLL 404
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 184-327 4.78e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 64.39  E-value: 4.78e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 184 YLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSII--MFLGSKFNYFWLSLSLSGGVIVS 261
Cdd:PRK08676  209 FLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAA 288

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1707765443 262 FVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGS 327
Cdd:PRK08676  289 FSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRS 354
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 185-379 2.71e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 62.06  E-value: 2.71e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 185 LFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSII-----MFLGSKFNYFWLSLSLSGGVI 259
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVfkanfVFTTLPFNNVFMILAALAIVF 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 260 VSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINL 339
Cdd:PRK12662  293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKS 372

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1707765443 340 MPGMSFWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFY 379
Cdd:PRK12662  373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAW 412
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 104-361 8.79e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 60.35  E-value: 8.79e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 104 FSSMSLLMFYIFFEASLIPTLLLIlGWGYQPERLQAGVYLIFYTLVAslpLLLVLfkvnkfIGSLFfpLFVDFGSFYF-- 181
Cdd:PRK07234  111 FVCADLISLYVALEVLSIATFLLV-AYPRTDRAIWVGLRYLFYSNVA---MLFYL------IGAVL--VYQANGTFAFsg 178

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 182 ------FFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSKFNYFWLSLSLS 255
Cdd:PRK07234  179 latadpEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALL 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 256 GgvivSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMsmnwWGCFgsfvLMIGHGLCSSGLFCLSNIIYERLgsrslliNKG 335
Cdd:PRK07234  259 G----VLFALLEKDLKRMLAFSTISQLGFILAAPL----VGGL----YALAHGLVKSTLFLCAGALPSRN-------FTE 319

                         250       260
                  ....*....|....*....|....*..
gi 1707765443 336 LINLMPGMSFWWFL-LSSSNIAAPPSL 361
Cdd:PRK07234  320 LISQMLGIGKWIPLtMASFSIAGFPLL 346
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 94-365 8.99e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 57.29  E-value: 8.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  94 LFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLiLGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSL-FFPL 172
Cdd:PRK12665  118 LILVAGVSNAFLAGDLFNLYVGFEILLVASYVL-LTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLnMADL 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 173 FVDFGSF----YFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIImFLGSKFNYF 248
Cdd:PRK12665  197 AVRLDELpsgtRTALFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLL-FPGGGLDTL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 249 WLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSR 328
Cdd:PRK12665  276 LMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSS 355

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1707765443 329 SLLINKGLINLMPGMSFWWFLlsssniaapPSLNLAG 365
Cdd:PRK12665  356 SLRRLGGLAKASPLLAVLFFV---------PALNLGG 383
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-103 6.24e-08

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 50.60  E-value: 6.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443   1 MLSYLFMLFFMIPLSFFYKFWWLF-----HSLFFLISFAFMLNFYFLSDFNMISYFLGVDYFSFSLILLSFWICSLMLT- 74
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWttstlYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILa 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1707765443  75 -SSSSIYNSFSYSGLFSFMILFLMIMLYCS 103
Cdd:pfam01059  81 sQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
PRK12646 PRK12646
DUF4040 family protein;
89-362 9.03e-08

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 54.38  E-value: 9.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  89 FSFMILFLMIMLYCSFSSMSLLMfYIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSL 168
Cdd:PRK12646  113 YFYLTLFMFSMIGIVLSDNTILM-YVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTN 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 169 FFPLFV-------DFGSFYFFFYLFMILAFlVKMPMFLFHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMSIIMf 240
Cdd:PRK12646  192 NITEILgqadhikNHGLFIPMIFMFLLGAF-TKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG- 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 241 LGSKFNYFWLSLSLSGGVIVSFVCFRQVDLKSLIAYSSVAH----MSMV-IGGLMSMNWWGCFGSFVLMI---------G 306
Cdd:PRK12646  269 LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQlgmiMAMVgIGGGYAQHQQDAIASIYVFVlfaalfhlmN 348

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1707765443 307 HGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFwWFLLSSSNIAAPPSLN 362
Cdd:PRK12646  349 HAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNL-VMTIAALSMAGVPFLN 403
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 187-379 3.62e-07

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 52.46  E-value: 3.62e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 187 MILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVIV--SFVC 264
Cdd:PRK08377  212 LIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLVIIMATLTVFfaELSA 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 265 FRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMS 344
Cdd:PRK08377  292 LRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTA 371

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1707765443 345 FWWFLLSSSNIAAPPSLNLAGEFSLMNGIISWSFY 379
Cdd:PRK08377  372 LALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYT 406
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 109-362 4.24e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 52.02  E-value: 4.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 109 LLMFYIFFEASLIPTLLLILGWGYQPERLQAGvylIFYTLVASLPLLLVLFKVNKFIGSL-------------FFPLFVD 175
Cdd:PRK08376  143 LFNFFVFLEIMSIASYALVAFRNDTWEAIEAG---IKYMFVGSLASSMVLLGIALLYGQYgtlnmaylavkmsENPTVVA 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 176 FGSFYFFfylfmILAFLVKMPMFLFHLWLPKAHVEAPISGSMILagVLLKLGG-YGIFRVMsiimflgskFNYFWLSLSL 254
Cdd:PRK08376  220 KIALALF-----IAGLAMKSGAVPVHMWLPDAYPAAPSSISAML--LVIKQAGlYALARVL---------FSIYGPAINL 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 255 S--GGVIVSFVCFR----------QVDLKSLIAYSSVAH---------MSMVIGGLMSMNWWGCF---GSFVLMIGHGLC 310
Cdd:PRK08376  284 AtvGWVIIILGCLTmfvgvamavvQKDVKRLLAYHSVSQigymllglgVGLAALGDPAMASYGEIalaGGIYHIVNHALY 363

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1707765443 311 SSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFwWFLLSSSNIAAPPSLN 362
Cdd:PRK08376  364 KALLFLTAGAVIYETGTRNLNELGGLARTMPKTTI-AFLIGAAAIVGLPPFN 414
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 184-362 5.34e-07

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 51.81  E-value: 5.34e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 184 YLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVmsIIMFLGSKfNYFW--LSLSLSGGVIVS 261
Cdd:PRK06521  213 FLLALFGFGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRV--VFDLLGAP-GWWWgvLVLALGAISAVL 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 262 FVCFR--QVDLKSLIAYSSVAHM---SMVIG--------GLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSR 328
Cdd:PRK06521  290 GVLYAlaEHDLKRLLAYSTIENIgiiFVGLGlamvfiayGMPLLAALALTAALYHLLNHALFKSLLFLGAGAVLHATGTR 369

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1707765443 329 SLLINKGLINLMPGMSfWWFLLSSSNIAAPPSLN 362
Cdd:PRK06521  370 DMEKLGGLIRRMPWTA-WAFLIGCLAISALPPLN 402
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 59-370 3.63e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 49.04  E-value: 3.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  59 FSLILLSFWICSLMLTSSSSIYNSFSYSGLFSFMILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLIlGWGYQPERLQ 138
Cdd:PRK06589   88 FLLLIGFLWICALLYTPKYLAINNIDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLI-GHTRNNISLS 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 139 AGV-YLIFYTLVASLPLLLVLFKVNKFIGSLFFPLFVDFGSFYFFFYLFMILAFLVKMPMFLFHLWLPKAHVEAPISGSM 217
Cdd:PRK06589  167 GGYkYLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSAL 246

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 218 ILAGVLLKLGGYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVIV-----SFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSM 292
Cdd:PRK06589  247 LHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAEFNWLIFIPIVsifysSLKALKTDNIKKILAYSTISQLSLALLSAFIL 326

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1707765443 293 NWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPPSLNLAGEFSLM 370
Cdd:PRK06589  327 TPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLIL 404
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
87-359 1.66e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.87  E-value: 1.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  87 GLFSFmILFLMIMLYCSFSSMSLLMFYIFFEASLIPTLLLILgWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIG 166
Cdd:PRK12663  109 GFPPF-ILLLMAGVIGSFLTGDLFNLYVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFG 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 167 SLFFPLF------VDFGSFYFFFYLFMILAFLVKMPMFLFHlWLPKAHVEAPISGSMILAGVLLKLGGYGIFRVMSIIMF 240
Cdd:PRK12663  187 TLNMAHIamrlndMGDTATLTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFP 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 241 ----LGSKFNYFWLSLSLSGGVIVSFVcfrQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFC 316
Cdd:PRK12663  266 qereLLHPLLATMAAITMVIGALGALA---YKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFL 342

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1707765443 317 LSNIIYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPP 359
Cdd:PRK12663  343 IAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPP 385
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 89-341 2.19e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 46.84  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  89 FSFMILFLMIMLYCSFSSmSLLMFYIFFEASLIPTLLLIlgwGYQPER-------LQAgvylIFYTLVASLPLLLVLFKV 161
Cdd:PRK12647   98 YSYILLFMASMLGLVLSD-NLITLFVFWELTSITSFLLI---GFNHEReaarraaLQA----LLVTGGGGLALLAGLILL 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 162 NKFIGSLFFPLFVDFG------SFYFFFYLFMILAFLVKMPMFLFHLWLPKAhVEAPI-------SGSMILAGVLLklgg 228
Cdd:PRK12647  170 GNVTGTYSLSELLASGdvirehPLYLAILLLVLGGAFTKSAQFPFHFWLPNA-MEAPTpvsaylhSATMVKAGIYL---- 244

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 229 ygifrVMSIIMFLGSKFNYFWLsLSLSGG---VIVSFVCFRQVDLKSLIAYSSVAH---MSMVIGglmsmnwwgcFGS-- 300
Cdd:PRK12647  245 -----LARLNPVLGGTPLWQTI-LPLFGGltmLTGALLAVRQTDLKLILAYSTVSAlgtLVMLLG----------LGSel 308

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1707765443 301 -----FVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMP 341
Cdd:PRK12647  309 aikaaVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMP 354
PRK12650 PRK12650
DUF4040 family protein;
188-361 4.71e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.80  E-value: 4.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 188 ILAFLV------KMPMFLFHLWLPKAHVEA-PISGSMILAGVLlKLGGYGIFRvMSIIMFLGSKFNYFWLSLSLSGGVIV 260
Cdd:PRK12650  209 VVAVLIavaaftKSAQFPFHFWLPEAMAAItPVSAFLHAAAVV-KAGIYLLLR-FSPVFHDVAVWNWLLIIVGMITALMG 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 261 SFVCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLM 340
Cdd:PRK12650  287 AVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRM 366

                         170       180
                  ....*....|....*....|.
gi 1707765443 341 PgMSFWWFLLSSSNIAAPPSL 361
Cdd:PRK12650  367 P-FTFVSVTIAALSMAAVPPL 386
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 201-367 1.17e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.35  E-value: 1.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 201 HLWLPKAHVEAPISGSMILAGVLLKLGGYGIFrvmsIIMFLGSKFNYFWLSLSLSGGVIVSFV----CFRQVDLKSLIAY 276
Cdd:PRK08042  200 HGWVPQAHANASAPAAALFSTVVMKIGLLGIL----TLSLLGGNAPLWWGVALLVLGMITAFVgglyALMEHNIQRLLAY 275

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 277 SSVAHMSMVIGGL------MSMNW-----WGCFGSFVLMIGHGLCSSGLFCLSNIIYERLGSRSLLINKGLINLMPGMSF 345
Cdd:PRK08042  276 HTLENIGIILLGLgagvtgIALEQpaliaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISI 355

                         170       180
                  ....*....|....*....|..
gi 1707765443 346 WWFLLSSSNIAAPPSLNLAGEF 367
Cdd:PRK08042  356 AMLVGLMAMAALPPLNGFAGEW 377
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 89-283 1.37e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.97  E-value: 1.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  89 FSFMILFLMIMLYCSFSSMSLLMFyIFFEASLIPTLLLILGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSL 168
Cdd:PRK12649  114 YQYLLLFMGSMIGMVFSGNTIQLF-IFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTY 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 169 FFPLFVDFGS---------FYFFFYLFMILAFLVKMPMFLFHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVMSIi 238
Cdd:PRK12649  193 DIATILQDSElienikghpLFLITLILIFIGAAAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVYLVARIHPI- 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1707765443 239 mFLGSKFNYFWLS-LSLSGGVIVSFVCFRQVDLKSLIAYSSVAHMS 283
Cdd:PRK12649  271 -FSGTEAWFILVSgTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
185-315 1.84e-03

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 40.57  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 185 LFMILAFLVKMPMFLFHLWLPKAHVEAPISGSMILAGVLlKLGGYGIFRVMSIIMFLGSKFNYFWLSLSLSGGVIV--SF 262
Cdd:PRK05777  208 VFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAVLLRLLVVAFGGLSEDWQQVLAIIAIASMLvgNL 286

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1707765443 263 VCFRQVDLKSLIAYSSVAHMSMVIGGLMSMNWWGCFGSFVLMIGHGLCSSGLF 315
Cdd:PRK05777  287 AALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAF 339
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 89-359 4.24e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 39.19  E-value: 4.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443  89 FSFMILFLMIMLYCSFSSmSLLMFYIFFEASLIPTLLLIlGWGYQPERLQAGVYLIFYTLVASLPLLLVLFKVNKFIGSL 168
Cdd:PRK06525  116 YAFLLLFIGAMAGLVYSS-TLLGLLLFFEITGLCSWALI-SYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTF 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 169 -FFPLFVDFGSFYFFFYLFMILAFLVKMPMFLFHLWLPKAhVEAPISGSMIL-AGVLLKLGGYGIFRVmsiIMFLGSKFN 246
Cdd:PRK06525  194 aLSALSGLHGSLKYLVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARA---IQSMGPIPH 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1707765443 247 YFWLSLSLSGGVIVSFVC---FRQVDLKSLIAYSSVAHMS-MVIGGLMSM--NWWGCFGSFVLMIGHGLCSSGLFCLSNI 320
Cdd:PRK06525  270 VIGYVGAVMAIVTLLYGFlmyLPQQDMKRLLAYSTITQLGyMFFGLSLAIlgSRLALEGSIAYIFNHAFAKSLFFLVAGA 349

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1707765443 321 IYERLGSRSLLINKGLINLMPGMSFWWFLLSSSNIAAPP 359
Cdd:PRK06525  350 LSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPP 388
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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