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Conserved domains on  [gi|1725328774|gb|QEE83805|]
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E4 [Human papillomavirus type 7]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pap_E4 super family cl27389
E4 protein; This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice ...
 86-119 1.27e-03

E4 protein; This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but neither the function of E4 or E1--E4 is known.


The actual alignment was detected with superfamily member pfam02711:

Pssm-ID: 391731  Cd Length: 95  Bit Score: 35.36  E-value: 1.27e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1725328774  86 VVEENTWTLETEHARLILKATTKSGTVVEVILHL 119
Cdd:pfam02711  62 VSTVGPWTVTTTGSSVTLTAQTKDGTTVTVTLHL 95
 
Name Accession Description Interval E-value
Pap_E4 pfam02711
E4 protein; This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice ...
 86-119 1.27e-03

E4 protein; This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but neither the function of E4 or E1--E4 is known.


Pssm-ID: 367150  Cd Length: 95  Bit Score: 35.36  E-value: 1.27e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1725328774  86 VVEENTWTLETEHARLILKATTKSGTVVEVILHL 119
Cdd:pfam02711  62 VSTVGPWTVTTTGSSVTLTAQTKDGTTVTVTLHL 95
 
Name Accession Description Interval E-value
Pap_E4 pfam02711
E4 protein; This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice ...
 86-119 1.27e-03

E4 protein; This is is a family of Papillomavirus proteins, E4, coded for by ORF4. A splice variant, E1--E4, exists but neither the function of E4 or E1--E4 is known.


Pssm-ID: 367150  Cd Length: 95  Bit Score: 35.36  E-value: 1.27e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1725328774  86 VVEENTWTLETEHARLILKATTKSGTVVEVILHL 119
Cdd:pfam02711  62 VSTVGPWTVTTTGSSVTLTAQTKDGTTVTVTLHL 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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