NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1735073506|gb|QEM01921|]
View 

30S ribosomal protein S17 (apicoplast) [Nephromyces sp. ex Molgula occidentalis]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_uS17 super family cl46261
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 3-57 9.52e-05

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


The actual alignment was detected with superfamily member cd00364:

Pssm-ID: 466775  Cd Length: 73  Bit Score: 36.64  E-value: 9.52e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1735073506  3 KIYKGFVIKKKQFKLIIVLYSYLIFNKKYNIKIIKYKKYLIEDSKNEAFKGDLIL 57
Cdd:cd00364    1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNECKVGDIVR 55
 
Name Accession Description Interval E-value
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 3-57 9.52e-05

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 36.64  E-value: 9.52e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1735073506  3 KIYKGFVIKKKQFKLIIVLYSYLIFNKKYNIKIIKYKKYLIEDSKNEAFKGDLIL 57
Cdd:cd00364    1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNECKVGDIVR 55
Ribosomal_S17 pfam00366
Ribosomal protein S17;
7-58 3.83e-04

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 35.06  E-value: 3.83e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1735073506  7 GFVIKKKQFKLIIVLYSYLIFNKKYNIKIIKYKKYLIEDSKNEAFKGDLILF 58
Cdd:pfam00366  1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNECKVGDVVRI 52
 
Name Accession Description Interval E-value
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 3-57 9.52e-05

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 36.64  E-value: 9.52e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1735073506  3 KIYKGFVIKKKQFKLIIVLYSYLIFNKKYNIKIIKYKKYLIEDSKNEAFKGDLIL 57
Cdd:cd00364    1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEPNECKVGDIVR 55
Ribosomal_S17 pfam00366
Ribosomal protein S17;
7-58 3.83e-04

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 35.06  E-value: 3.83e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1735073506  7 GFVIKKKQFKLIIVLYSYLIFNKKYNIKIIKYKKYLIEDSKNEAFKGDLILF 58
Cdd:pfam00366  1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNECKVGDVVRI 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH