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Conserved domains on  [gi|1756480367|gb|QFF92219|]
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14.7 kDa protein [Human adenovirus E4]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Adeno_E3_15_3 super family cl03998
Adenovirus 15.3kD protein in E3 region;
16-131 4.22e-25

Adenovirus 15.3kD protein in E3 region;


The actual alignment was detected with superfamily member pfam03307:

Pssm-ID: 460880  Cd Length: 117  Bit Score: 92.15  E-value: 4.22e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480367  16 DGRGSEQRLAQLRIRQQQ-ERAVKELQDAVAIHQCKKGIFCLVKQAKISFEVTSTDHRLSYELLQQRQKFTCLVGVNPIV 94
Cdd:pfam03307   1 DGENLDLELDEINKAARElERLKAASEDERLKHECEDGIFCHQCKAGIFCEKKQAGLRLEKKLPGNRLKLKLMTGEKKIT 80
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1756480367  95 ITQQSGDTKGCIHCSCNSSECVYTLIKTLCGLRDLLP 131
Cdd:pfam03307  81 LMQGEAEIEGCLHFAEQEGCDHCPLIGPECGCRDIIP 117
 
Name Accession Description Interval E-value
Adeno_E3_15_3 pfam03307
Adenovirus 15.3kD protein in E3 region;
16-131 4.22e-25

Adenovirus 15.3kD protein in E3 region;


Pssm-ID: 460880  Cd Length: 117  Bit Score: 92.15  E-value: 4.22e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480367  16 DGRGSEQRLAQLRIRQQQ-ERAVKELQDAVAIHQCKKGIFCLVKQAKISFEVTSTDHRLSYELLQQRQKFTCLVGVNPIV 94
Cdd:pfam03307   1 DGENLDLELDEINKAARElERLKAASEDERLKHECEDGIFCHQCKAGIFCEKKQAGLRLEKKLPGNRLKLKLMTGEKKIT 80
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1756480367  95 ITQQSGDTKGCIHCSCNSSECVYTLIKTLCGLRDLLP 131
Cdd:pfam03307  81 LMQGEAEIEGCLHFAEQEGCDHCPLIGPECGCRDIIP 117
 
Name Accession Description Interval E-value
Adeno_E3_15_3 pfam03307
Adenovirus 15.3kD protein in E3 region;
16-131 4.22e-25

Adenovirus 15.3kD protein in E3 region;


Pssm-ID: 460880  Cd Length: 117  Bit Score: 92.15  E-value: 4.22e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1756480367  16 DGRGSEQRLAQLRIRQQQ-ERAVKELQDAVAIHQCKKGIFCLVKQAKISFEVTSTDHRLSYELLQQRQKFTCLVGVNPIV 94
Cdd:pfam03307   1 DGENLDLELDEINKAARElERLKAASEDERLKHECEDGIFCHQCKAGIFCEKKQAGLRLEKKLPGNRLKLKLMTGEKKIT 80
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1756480367  95 ITQQSGDTKGCIHCSCNSSECVYTLIKTLCGLRDLLP 131
Cdd:pfam03307  81 LMQGEAEIEGCLHFAEQEGCDHCPLIGPECGCRDIIP 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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