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cytochrome b, partial (mitochondrion) [Xenicus gilviventris]
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
Cytochrome_b_N super family | cl23723 | Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-53 | 7.20e-29 | ||
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD. The actual alignment was detected with superfamily member MTH00119: Pssm-ID: 474033 [Multi-domain] Cd Length: 380 Bit Score: 104.21 E-value: 7.20e-29
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Name | Accession | Description | Interval | E-value | ||
CYTB | MTH00119 | cytochrome b; Provisional |
1-53 | 7.20e-29 | ||
cytochrome b; Provisional Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 104.21 E-value: 7.20e-29
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Cytochrom_B_C | pfam00032 | Cytochrome b(C-terminal)/b6/petD; |
1-52 | 6.24e-17 | ||
Cytochrome b(C-terminal)/b6/petD; Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 67.12 E-value: 6.24e-17
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cytochrome_b_C | cd00290 | Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-50 | 5.00e-11 | ||
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD. Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 53.42 E-value: 5.00e-11
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QcrB/PetB | COG1290 | Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-53 | 2.79e-04 | ||
Cytochrome b subunit of the bc complex [Energy production and conversion]; Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 35.92 E-value: 2.79e-04
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Name | Accession | Description | Interval | E-value | ||
CYTB | MTH00119 | cytochrome b; Provisional |
1-53 | 7.20e-29 | ||
cytochrome b; Provisional Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 104.21 E-value: 7.20e-29
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CYTB | MTH00100 | cytochrome b; Provisional |
1-53 | 6.71e-27 | ||
cytochrome b; Provisional Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 98.94 E-value: 6.71e-27
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CYTB | MTH00131 | cytochrome b; Provisional |
1-52 | 9.79e-26 | ||
cytochrome b; Provisional Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 95.87 E-value: 9.79e-26
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CYTB | MTH00074 | cytochrome b; Provisional |
1-52 | 2.02e-23 | ||
cytochrome b; Provisional Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 89.35 E-value: 2.02e-23
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CYTB | MTH00191 | cytochrome b; Provisional |
1-53 | 3.77e-21 | ||
cytochrome b; Provisional Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 83.04 E-value: 3.77e-21
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CYTB | MTH00034 | cytochrome b; Validated |
1-52 | 1.05e-20 | ||
cytochrome b; Validated Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 82.06 E-value: 1.05e-20
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CYTB | MTH00022 | cytochrome b; Validated |
1-52 | 1.85e-18 | ||
cytochrome b; Validated Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 75.89 E-value: 1.85e-18
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CYTB | MTH00053 | cytochrome b; Provisional |
1-52 | 1.80e-17 | ||
cytochrome b; Provisional Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 73.20 E-value: 1.80e-17
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Cytochrom_B_C | pfam00032 | Cytochrome b(C-terminal)/b6/petD; |
1-52 | 6.24e-17 | ||
Cytochrome b(C-terminal)/b6/petD; Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 67.12 E-value: 6.24e-17
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CYTB | MTH00145 | cytochrome b; Provisional |
1-52 | 6.85e-17 | ||
cytochrome b; Provisional Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 71.47 E-value: 6.85e-17
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CYTB | MTH00156 | cytochrome b; Provisional |
1-53 | 3.70e-16 | ||
cytochrome b; Provisional Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 69.43 E-value: 3.70e-16
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CYTB | MTH00016 | cytochrome b; Validated |
1-48 | 5.58e-14 | ||
cytochrome b; Validated Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 63.54 E-value: 5.58e-14
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CYTB | MTH00224 | cytochrome b; Provisional |
1-53 | 5.97e-13 | ||
cytochrome b; Provisional Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 60.71 E-value: 5.97e-13
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cytochrome_b_C | cd00290 | Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-50 | 5.00e-11 | ||
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD. Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 53.42 E-value: 5.00e-11
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CYTB | MTH00033 | cytochrome b; Provisional |
1-52 | 4.15e-09 | ||
cytochrome b; Provisional Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 49.55 E-value: 4.15e-09
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QcrB/PetB | COG1290 | Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-53 | 2.79e-04 | ||
Cytochrome b subunit of the bc complex [Energy production and conversion]; Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 35.92 E-value: 2.79e-04
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CYTB | MTH00046 | cytochrome b; Validated |
18-52 | 6.39e-04 | ||
cytochrome b; Validated Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 34.96 E-value: 6.39e-04
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Blast search parameters | ||||
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