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Conserved domains on  [gi|1793664896|gb|QHD57757|]
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movement protein [Horsegram yellow mosaic virus]

Protein Classification

movement protein BC1( domain architecture ID 10467202)

movement protein BC1 transports viral genome to neighboring plant cells directly through plasmosdesmata, without any budding

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Gemini_BL1 pfam00845
Geminivirus BL1 movement protein; Geminiviruses encode two movement proteins that are ...
12-298 1.73e-169

Geminivirus BL1 movement protein; Geminiviruses encode two movement proteins that are essential for systemic infection of their host but dispensable for replication and encapsidation.


:

Pssm-ID: 307131  Cd Length: 276  Bit Score: 470.67  E-value: 1.73e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1793664896  12 KYVETKSCEYRLTNNETPIKLQFPSYLEQKTVQIMGKCMKVDHAVIEYRNQVPFNAEGSVVVTIRDTRLSYEQAAQAAFT 91
Cdd:pfam00845   1 NYIESKRDEYQLSNDLTEITLQFPSTAEQKTSRLSGRCMKIDHCVIEYRNQVPINATGSVIVEIHDKRLTDNESLQASFT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1793664896  92 FPIGCNVDLHYFSSSFFSLKDDTPWEIVYKVEDSNVIDGTTFAQIKAKLKLSSAKHSTDIRFKPPTINILSKDFTKDCVD 171
Cdd:pfam00845  81 FPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSSAKHSVDIPFRAPTIKILSKQFTEDDID 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1793664896 172 FWSVERPKPIRRLLNPGPKQGPdvFEGQRPITLQPGETWATKSSIGRSASmryttqdrigiQDNPTTSDADYPLRHLHKL 251
Cdd:pfam00845 161 FWHVGYGKWERKLVRPASLSGR--LGLRRPITIQPGETWATRSTIGITQS-----------ETDSEVENAEHPYRHLHRL 227
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1793664896 252 HESSLDPGDSISQT-QSNAMSRKDMEDIIESAINKCLITQ-KSTVNKTL 298
Cdd:pfam00845 228 GTASLDPGDSASQVgSSITMSRADLNEIIETTVNECINSNcRSSQPKSL 276
 
Name Accession Description Interval E-value
Gemini_BL1 pfam00845
Geminivirus BL1 movement protein; Geminiviruses encode two movement proteins that are ...
12-298 1.73e-169

Geminivirus BL1 movement protein; Geminiviruses encode two movement proteins that are essential for systemic infection of their host but dispensable for replication and encapsidation.


Pssm-ID: 307131  Cd Length: 276  Bit Score: 470.67  E-value: 1.73e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1793664896  12 KYVETKSCEYRLTNNETPIKLQFPSYLEQKTVQIMGKCMKVDHAVIEYRNQVPFNAEGSVVVTIRDTRLSYEQAAQAAFT 91
Cdd:pfam00845   1 NYIESKRDEYQLSNDLTEITLQFPSTAEQKTSRLSGRCMKIDHCVIEYRNQVPINATGSVIVEIHDKRLTDNESLQASFT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1793664896  92 FPIGCNVDLHYFSSSFFSLKDDTPWEIVYKVEDSNVIDGTTFAQIKAKLKLSSAKHSTDIRFKPPTINILSKDFTKDCVD 171
Cdd:pfam00845  81 FPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSSAKHSVDIPFRAPTIKILSKQFTEDDID 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1793664896 172 FWSVERPKPIRRLLNPGPKQGPdvFEGQRPITLQPGETWATKSSIGRSASmryttqdrigiQDNPTTSDADYPLRHLHKL 251
Cdd:pfam00845 161 FWHVGYGKWERKLVRPASLSGR--LGLRRPITIQPGETWATRSTIGITQS-----------ETDSEVENAEHPYRHLHRL 227
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1793664896 252 HESSLDPGDSISQT-QSNAMSRKDMEDIIESAINKCLITQ-KSTVNKTL 298
Cdd:pfam00845 228 GTASLDPGDSASQVgSSITMSRADLNEIIETTVNECINSNcRSSQPKSL 276
 
Name Accession Description Interval E-value
Gemini_BL1 pfam00845
Geminivirus BL1 movement protein; Geminiviruses encode two movement proteins that are ...
12-298 1.73e-169

Geminivirus BL1 movement protein; Geminiviruses encode two movement proteins that are essential for systemic infection of their host but dispensable for replication and encapsidation.


Pssm-ID: 307131  Cd Length: 276  Bit Score: 470.67  E-value: 1.73e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1793664896  12 KYVETKSCEYRLTNNETPIKLQFPSYLEQKTVQIMGKCMKVDHAVIEYRNQVPFNAEGSVVVTIRDTRLSYEQAAQAAFT 91
Cdd:pfam00845   1 NYIESKRDEYQLSNDLTEITLQFPSTAEQKTSRLSGRCMKIDHCVIEYRNQVPINATGSVIVEIHDKRLTDNESLQASFT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1793664896  92 FPIGCNVDLHYFSSSFFSLKDDTPWEIVYKVEDSNVIDGTTFAQIKAKLKLSSAKHSTDIRFKPPTINILSKDFTKDCVD 171
Cdd:pfam00845  81 FPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSSAKHSVDIPFRAPTIKILSKQFTEDDID 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1793664896 172 FWSVERPKPIRRLLNPGPKQGPdvFEGQRPITLQPGETWATKSSIGRSASmryttqdrigiQDNPTTSDADYPLRHLHKL 251
Cdd:pfam00845 161 FWHVGYGKWERKLVRPASLSGR--LGLRRPITIQPGETWATRSTIGITQS-----------ETDSEVENAEHPYRHLHRL 227
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1793664896 252 HESSLDPGDSISQT-QSNAMSRKDMEDIIESAINKCLITQ-KSTVNKTL 298
Cdd:pfam00845 228 GTASLDPGDSASQVgSSITMSRADLNEIIETTVNECINSNcRSSQPKSL 276
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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