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Conserved domains on  [gi|1893869142|gb|QNH68999|]
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cytochrome b [Teredorus nigropennis]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 642.99  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  12 IKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  92 FICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 172 ENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMISMQQPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 252 GDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYPMNQMLFWTMTT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1893869142 332 TVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFIMTP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 642.99  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  12 IKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  92 FICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 172 ENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMISMQQPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 252 GDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYPMNQMLFWTMTT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1893869142 332 TVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFIMTP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-371 4.08e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 345.24  E-value: 4.08e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  12 IKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  92 FICMYLHVGRGLYYSSFmlKE----TWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWG 167
Cdd:COG1290   100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 168 GFAVENPTLSRFFSLH-FILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEK----IPFHPFFSFKDSITMMMMIMTLMM 242
Cdd:COG1290   178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 243 ISMQQPymLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIP--NKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYP 320
Cdd:COG1290   258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1893869142 321 MNQMLFWTMTTTVIMLTWIGKQPveEPYIKTGQMLTMIYFSYFIMT-PWVSK 371
Cdd:COG1290   336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVlPILAF 385
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.64e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 264.62  E-value: 3.64e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  10 PIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  90 MFFICMYLHVGRGLYYSSFM--LKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1893869142 168 GFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.50e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 241.52  E-value: 2.50e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  19 LIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMFFICMYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  99 VGRGLYYSSF--MLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWGGFAVENPTL 176
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1893869142 177 SRFFSLHFILPFIILIMVMIHLMFLHQSG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 248-340 5.45e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.80  E-value: 5.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 248 PYMLGDPdnfipANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFY-NKTKFQGMQFYPMNQMLF 326
Cdd:TIGR01156  59 PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF 133

                          90
                  ....*....|....
gi 1893869142 327 WTMTTTVImltWIG 340
Cdd:TIGR01156 134 LFGTVVAL---WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 12-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 642.99  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  12 IKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMF 91
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  92 FICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWGGFAV 171
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 172 ENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMISMQQPYML 251
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 252 GDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYPMNQMLFWTMTT 331
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1893869142 332 TVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFIMTP 367
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 603.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   1 MNKPLRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLM 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  81 RTLHMNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGET 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 161 MVQWLWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTL 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 241 MMISMQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1893869142 321 MNQMLFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFS-YFIMTPWVSKTWDKMIN 378
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTiLLILFPLLGALENKMLN 379
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 596.89  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   1 MNKPLRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLM 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  81 RTLHMNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGET 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 161 MVQWLWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTL 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 241 MMISMQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1893869142 321 MNQMLFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFIMTPWVSKTWDKMI 377
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 582.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   5 LRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  85 MNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 165 LWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMIS 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 245 MQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYPMNQM 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1893869142 325 LFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFIM 365
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00131
cytochrome b; Provisional
 5-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 579.30  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   5 LRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLH 84
Cdd:MTH00131    4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  85 MNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQW 164
Cdd:MTH00131   84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 165 LWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMIS 244
Cdd:MTH00131  164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 245 MQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYPMNQM 324
Cdd:MTH00131  244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1893869142 325 LFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYF-IMTPWVSKTWDKMIN 378
Cdd:MTH00131  324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFlVLMPLAGWLENKALE 378
CYTB MTH00074
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 575.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   1 MNKPLRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLM 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  81 RTLHMNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGET 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 161 MVQWLWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTL 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 241 MMISMQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1893869142 321 MNQMLFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFI-MTPWVSKTWDKMIN 378
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIiIIPLTGWLENKLLK 379
CYTB MTH00100
cytochrome b; Provisional
 4-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 573.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   4 PLRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTL 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  84 HMNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 164 WLWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMI 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 244 SMQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYPMNQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1893869142 324 MLFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYF-IMTPWVSKTWDKMI 377
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIlILMPIASLIENNLL 377
CYTB MTH00016
cytochrome b; Validated
 1-377 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 561.61  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   1 MNKPLRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLM 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  81 RTLHMNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGET 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 161 MVQWLWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTL 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 241 MMISMQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1893869142 321 MNQMLFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFIMTPWVSKTWDKMI 377
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00034
cytochrome b; Validated
 4-378 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 541.60  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   4 PLRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTL 83
Cdd:MTH00034    3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  84 HMNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQ 163
Cdd:MTH00034   83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 164 WLWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMI 243
Cdd:MTH00034  163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 244 SMQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYPMNQ 323
Cdd:MTH00034  243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1893869142 324 MLFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFIMT-PWVSKTWDKMIN 378
Cdd:MTH00034  323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFfPLISYLENKLIF 378
CYTB MTH00224
cytochrome b; Provisional
 1-378 6.54e-178

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 499.45  E-value: 6.54e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   1 MNKPLRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLM 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  81 RTLHMNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGET 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 161 MVQWLWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTL 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 241 MMISMQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1893869142 321 MNQMLFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFIMTPWVSKTWDKMIN 378
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 4-365 2.14e-172

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 485.36  E-value: 2.14e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   4 PLRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTL 83
Cdd:MTH00022    2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  84 HMNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQ 163
Cdd:MTH00022   82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 164 WLWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMI 243
Cdd:MTH00022  162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 244 SMQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYPMNQ 323
Cdd:MTH00022  242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1893869142 324 MLFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFIM 365
Cdd:MTH00022  322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 1-378 3.05e-169

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 477.28  E-value: 3.05e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   1 MNKPLRKTHPIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLM 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  81 RTLHMNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGET 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 161 MVQWLWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTL 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 241 MMISMQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1893869142 321 MNQMLFWTMTTTVIMLTWIGKQPVEEPYIKTGQMLTMIYFSYF-IMTPWVSKTWDKMIN 378
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFlILMPLAGYLENKLLK 379
CYTB MTH00033
cytochrome b; Provisional
 5-365 3.73e-129

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 375.82  E-value: 3.73e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142   5 LRKTHPIIKIinNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLH 84
Cdd:MTH00033    3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  85 MNGASMFFICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQW 164
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 165 LWGGFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMIS 244
Cdd:MTH00033  161 IWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 245 MQQ--PYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYPMN 322
Cdd:MTH00033  241 IEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTG 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1893869142 323 QMLFWTMTTTVIMLTWIGKQPV-EEPYIKTGQMLTMIYFSYFIM 365
Cdd:MTH00033  321 KFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 13-365 1.00e-124

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 363.49  E-value: 1.00e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  13 KIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMFF 92
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  93 ICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWGGFAVE 172
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 173 NPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMISMqQPYMLG 252
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFIIFSLF-YPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 253 DPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNktkFQGMQFYPMNQMLFWTMTTT 332
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1893869142 333 VIMLTWIGKQPVEEPYIKTGQMLTMIYFSYFIM 365
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-371 4.08e-117

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 345.24  E-value: 4.08e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  12 IKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMF 91
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  92 FICMYLHVGRGLYYSSFmlKE----TWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWG 167
Cdd:COG1290   100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 168 GFAVENPTLSRFFSLH-FILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEK----IPFHPFFSFKDSITMMMMIMTLMM 242
Cdd:COG1290   178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 243 ISMQQPymLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIP--NKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYP 320
Cdd:COG1290   258 LAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1893869142 321 MNQMLFWTMTTTVIMLTWIGKQPveEPYIKTGQMLTMIYFSYFIMT-PWVSK 371
Cdd:COG1290   336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVlPILAF 385
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 3.64e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 264.62  E-value: 3.64e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  10 PIIKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  90 MFFICMYLHVGRGLYYSSFM--LKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1893869142 168 GFAVENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 12-358 6.96e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.45  E-value: 6.96e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  12 IKIINNSLIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMF 91
Cdd:MTH00046    2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  92 FICMYLHVGRGLYYSSFMLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWGGFAV 171
Cdd:MTH00046   82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 172 ENPTLSRFFSLHFILPFIILIMVMIHLMFLHQSGSNNPLGVNSNL-EKIPFHPFFSFKDSITMMMMIMTLMMISMQQPYM 250
Cdd:MTH00046  162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 251 LGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGvLALFMSIMITMIMPFYNKTKFqgmqFYPMNQMLFWTMT 330
Cdd:MTH00046  242 VLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSSV----YSVWRQVNFWLIV 316

                         330       340
                  ....*....|....*....|....*...
gi 1893869142 331 TTVIMLTWIGKQPVEEPYIKTGQMLTMI 358
Cdd:MTH00046  317 SLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 2.50e-79

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 241.52  E-value: 2.50e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  19 LIDLPTPLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMFFICMYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  99 VGRGLYYSSF--MLKETWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWGGFAVENPTL 176
Cdd:pfam00033  81 IFRGLYYGGFsyPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1893869142 177 SRFFSLHFILPFIILIMVMIHLMFLHQSG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 8.35e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 151.26  E-value: 8.35e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 208 NPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMISMQQPYMLGDPDNFIPANPMMTPPHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1893869142 288 KLGGVLALFMSIMITMIMPFYNKTKFQGmQFYPMNQMLFWTMTTTVIMLTWIGKQPVEEPYIKTGQM 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.09e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 136.45  E-value: 1.09e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 259 PANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFYNKTKFQGMQFYPMNQMLFWTMTTTVIMLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1893869142 339 IGKQPVEEPYIKTGQMLTMIY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 1.12e-39

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 138.53  E-value: 1.12e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  89 SMFFICMYLHVGRGLYYSSFMLKE--TWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 167 GGFAVENPTLSRFFSLHF-ILPFIILIMVMIHLMFLHQSGSNNPLGVNSNLEKIPFHPFFSFKDSITMMMMIMTLMMISM 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1893869142 246 QQPYMLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 2.06e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 137.15  E-value: 2.06e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  34 FGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMFFICMYLHVGRGLYYSSFMLKE- 112
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 113 -TWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWGGFAVENPTLSRFFSLH-FILPFII 190
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 1893869142 191 LIMVMIHLMFLHQSGSNNPL 210
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 3.64e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 122.91  E-value: 3.64e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142  25 PLNISMWWNFGSMLGLCLMMQIITGLFLTMHYTADIESAFKSTMHICRDVNNGWLMRTLHMNGASMFFICMYLHVGRgLY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR-VY 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 105 YSSFMLKE---TWLVGVAIMFLTMATAFIGYVLPWGQMSFWGATVITNLLSAIPYIGETMVQWLWGGFAVENPTLSRFFS 181
Cdd:CHL00070  106 LTGGFKKPrelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185

                         170       180       190
                  ....*....|....*....|....*....|
gi 1893869142 182 LH-FILPFIILIMVMIHLMFLHQSGSNNPL 210
Cdd:CHL00070  186 LHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 247-340 1.05e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 59.63  E-value: 1.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 247 QPYMLGDPdnfipANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFY-NKTKFQGMQFYPMNQML 325
Cdd:CHL00058   58 EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTV 132

                          90
                  ....*....|....*
gi 1893869142 326 FWTMTTTVImltWIG 340
Cdd:CHL00058  133 FLIGTAVAL---WLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 248-346 1.52e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 56.34  E-value: 1.52e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 248 PYMLGDPdnfipANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFY-NKTKFQGMQFYPMNQMLF 326
Cdd:COG5679    60 PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPVATAVF 134

                          90       100
                  ....*....|....*....|
gi 1893869142 327 WTMTTTVIMLTWIGKQPVEE 346
Cdd:COG5679   135 LFGTLVTLWLGIGAALPIDK 154
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 248-340 5.45e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.80  E-value: 5.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1893869142 248 PYMLGDPdnfipANPMMTPPHIQPEWYFLFAYAILRSIPNKLGGVLALFMSIMITMIMPFY-NKTKFQGMQFYPMNQMLF 326
Cdd:TIGR01156  59 PAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPVATTVF 133

                          90
                  ....*....|....
gi 1893869142 327 WTMTTTVImltWIG 340
Cdd:TIGR01156 134 LFGTVVAL---WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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