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Conserved domains on  [gi|1896069875|gb|QNJ47093|]
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cytochrome b, partial (mitochondrion) [Prosarthria teretrirostris]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-366 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 621.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  13 KIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFF 92
Cdd:MTH00156    2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  93 TCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAVD 172
Cdd:MTH00156   82 ICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 173 NPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIMITMSMMNPYILG 252
Cdd:MTH00156  162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 253 DPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQIMFWMMTTT 332
Cdd:MTH00156  242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1896069875 333 VIMLTWIGKRPVEEPYITTGQMLTMMYFLYFILN 366
Cdd:MTH00156  322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 621.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  13 KIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFF 92
Cdd:MTH00156    2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  93 TCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAVD 172
Cdd:MTH00156   82 ICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 173 NPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIMITMSMMNPYILG 252
Cdd:MTH00156  162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 253 DPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQIMFWMMTTT 332
Cdd:MTH00156  242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1896069875 333 VIMLTWIGKRPVEEPYITTGQMLTMMYFLYFILN 366
Cdd:MTH00156  322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-365 1.62e-111

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 330.98  E-value: 1.62e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  17 NSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIY 96
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  97 LHIGRGMYYGSYvysK-----TWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAV 171
Cdd:COG1290   105 LHMFRGFFYGAY---KkprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFP 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 172 DNPTLTRFFSIHFM-LPFMIVGLSMSHLMFLHQTGSNNPMG----MNSNTDKIPFHPYFNFKDLITLLLLMMIMITMSMM 246
Cdd:COG1290   182 GDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFF 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 247 NPyiLGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQI 324
Cdd:COG1290   262 FP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTA 339

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1896069875 325 MFWMMTTTVIMLTWIGKRPveEPYITTGQMLTMMYFLYFIL 365
Cdd:COG1290   340 LGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.88e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 253.83  E-value: 6.88e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  10 PMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  90 MFFTCIYLHIGRGMYYGSYV--YSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1896069875 168 GFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.45e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 234.58  E-value: 1.45e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  19 LIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  99 IGRGMYYGSYVYS--KTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1896069875 177 TRFFSIHFMLPFMIVGLSMSHLMFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-306 1.86e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.26  E-value: 1.86e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1896069875 259 PANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMP 306
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVP 112
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 621.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  13 KIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFF 92
Cdd:MTH00156    2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  93 TCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAVD 172
Cdd:MTH00156   82 ICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVD 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 173 NPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIMITMSMMNPYILG 252
Cdd:MTH00156  162 NATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 253 DPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQIMFWMMTTT 332
Cdd:MTH00156  242 DPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNI 321

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1896069875 333 VIMLTWIGKRPVEEPYITTGQMLTMMYFLYFILN 366
Cdd:MTH00156  322 VILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00119
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 580.70  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   1 MKKSMMKKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNS 160
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIM 240
Cdd:MTH00119  161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 241 ITMSMMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYP 320
Cdd:MTH00119  241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1896069875 321 MNQIMFWMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYF-LYFILNIHVSKMWDKIT 377
Cdd:MTH00119  321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFtILLILFPLLGALENKML 378
CYTB MTH00145
cytochrome b; Provisional
 1-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 574.55  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   1 MKKSMMKKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNS 160
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIM 240
Cdd:MTH00145  161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 241 ITMSMMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYP 320
Cdd:MTH00145  241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1896069875 321 MNQIMFWMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYFLYFILNIHVSKMWDKI 376
Cdd:MTH00145  321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNI 376
CYTB MTH00191
cytochrome b; Provisional
 5-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 559.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   5 MMKKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIH 84
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  85 ANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQW 164
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 165 IWGGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIMITMS 244
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 245 MMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQI 324
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1896069875 325 MFWMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYFLYFIL 365
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00131
cytochrome b; Provisional
 4-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 555.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   4 SMMKKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTI 83
Cdd:MTH00131    3 SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  84 HANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQ 163
Cdd:MTH00131   83 HANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 164 WIWGGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIMITM 243
Cdd:MTH00131  163 WIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 244 SMMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQ 323
Cdd:MTH00131  243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1896069875 324 IMFWMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYFLYFIL 365
Cdd:MTH00131  323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00074
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 550.05  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   1 MKKSMMKKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNS 160
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIM 240
Cdd:MTH00074  161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 241 ITMSMMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYP 320
Cdd:MTH00074  241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1896069875 321 MNQIMFWMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYFLYFILNIHVSKMWD 374
Cdd:MTH00074  321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLE 374
CYTB MTH00016
cytochrome b; Validated
 1-377 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 547.74  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   1 MKKSMMKKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNS 160
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIM 240
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 241 ITMSMMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYP 320
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1896069875 321 MNQIMFWMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYFLYFILNIHVSKMWDKIT 377
Cdd:MTH00016  321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00100
cytochrome b; Provisional
 4-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 545.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   4 SMMKKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTI 83
Cdd:MTH00100    3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  84 HANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQ 163
Cdd:MTH00100   83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 164 WIWGGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIMITM 243
Cdd:MTH00100  163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 244 SMMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQ 323
Cdd:MTH00100  243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1896069875 324 IMFWMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYFLYFIL 365
Cdd:MTH00100  323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
CYTB MTH00034
cytochrome b; Validated
 7-365 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 521.57  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   7 KKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHAN 86
Cdd:MTH00034    6 KSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  87 GASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIW 166
Cdd:MTH00034   86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 167 GGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIMITMSMM 246
Cdd:MTH00034  166 GGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 247 NPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQIMF 326
Cdd:MTH00034  246 FPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAF 325

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1896069875 327 WMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYFLYFIL 365
Cdd:MTH00034  326 WLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 1-376 1.70e-174

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 490.59  E-value: 1.70e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   1 MKKSMMKKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNS 160
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIM 240
Cdd:MTH00224  161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 241 ITMSMMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYP 320
Cdd:MTH00224  241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1896069875 321 MNQIMFWMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYFLYFILNIHVSKMWDKI 376
Cdd:MTH00224  321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDL 376
CYTB MTH00053
cytochrome b; Provisional
 1-365 1.06e-168

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 476.12  E-value: 1.06e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   1 MKKSMMKKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWML 80
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  81 RTIHANGASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNS 160
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 161 LVQWIWGGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIM 240
Cdd:MTH00053  161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 241 ITMSMMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYP 320
Cdd:MTH00053  241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1896069875 321 MNQIMFWMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYFLYFIL 365
Cdd:MTH00053  321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00022
cytochrome b; Validated
 7-367 4.12e-165

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 466.87  E-value: 4.12e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875   7 KKNPMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHAN 86
Cdd:MTH00022    5 KENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHAN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  87 GASMFFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIW 166
Cdd:MTH00022   85 GASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 167 GGFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIMITMSMM 246
Cdd:MTH00022  165 GGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYF 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 247 NPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQIMF 326
Cdd:MTH00022  245 APNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAF 324

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1896069875 327 WMMTTTVIMLTWIGKRPVEEPYITTGQMLTMMYFLYFILNI 367
Cdd:MTH00022  325 WFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLI 365
CYTB MTH00033
cytochrome b; Provisional
 17-365 1.94e-129

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 376.59  E-value: 1.94e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  17 NSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIY 96
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  97 LHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAVDNPTL 176
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 177 TRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDlITLLLLMMIMITMSMMNPYI---LGD 253
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKD-ILGFLILFGVFVIIGIEPRIetlLQD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 254 PENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQIMFWMMTTTV 333
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1896069875 334 IMLTWIGKRPV-EEPYITTGQMLTMMYFLYFIL 365
Cdd:MTH00033  332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 13-365 1.02e-118

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 348.08  E-value: 1.02e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  13 KIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFF 92
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  93 TCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAVD 172
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 173 NPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDlITLLLLMMIMITMSMMNPYILG 252
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 253 DPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKfypMNQIMFWMMTTT 332
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNK---LNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1896069875 333 VIMLTWIGKRPVEEPYITTGQMLTMMYFLYFIL 365
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
17-365 1.62e-111

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 330.98  E-value: 1.62e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  17 NSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIY 96
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  97 LHIGRGMYYGSYvysK-----TWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAV 171
Cdd:COG1290   105 LHMFRGFFYGAY---KkprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFP 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 172 DNPTLTRFFSIHFM-LPFMIVGLSMSHLMFLHQTGSNNPMG----MNSNTDKIPFHPYFNFKDLITLLLLMMIMITMSMM 246
Cdd:COG1290   182 GDATLNRFFALHVLlLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFF 261

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 247 NPyiLGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQI 324
Cdd:COG1290   262 FP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTA 339

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1896069875 325 MFWMMTTTVIMLTWIGKRPveEPYITTGQMLTMMYFLYFIL 365
Cdd:COG1290   340 LGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.88e-84

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 253.83  E-value: 6.88e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  10 PMNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGAS 89
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  90 MFFTCIYLHIGRGMYYGSYV--YSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWG 167
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1896069875 168 GFAVDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSN 207
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-367 1.21e-82

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.06  E-value: 1.21e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  11 MNKIINNSLIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASM 90
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  91 FFTCIYLHIGRGMYYGSYVYSKTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFA 170
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 171 VDNPTLTRFFSIHFMLPFMIVGLSMSHLMFLHQTGSNNPM-GMNSNTDKIPFHPYFNFKDLITLLLLMMIMITMSMMNPY 249
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLfSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 250 ILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIaLMSSIMILMIMPSYNKmmfrGNKFYPMNQIMFWMM 329
Cdd:MTH00046  241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNG----SSVYSVWRQVNFWLI 315

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1896069875 330 TTTVIMLTWIGKRPVEEPYITTGQMLT-MMYFLYFILNI 367
Cdd:MTH00046  316 VSLFFSLSYLGGCHPEYPYLLISQLFSvLMVLLLFIFKL 354
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.45e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 234.58  E-value: 1.45e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  19 LIDLPAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  99 IGRGMYYGSYVYS--KTWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1896069875 177 TRFFSIHFMLPFMIVGLSMSHLMFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 9.39e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 151.26  E-value: 9.39e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 208 NPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIMITMSMMNPYILGDPENFNPANPMNTPIHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896069875 288 KLGGVIALMSSIMILMIMPSYNKMMFRgNKFYPMNQIMFWMMTTTVIMLTWIGKRPVEEPYITTGQM 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 9.51e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 144.31  E-value: 9.51e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  89 SMFFTCIYLHIGRGMYYGSYVYSK--TWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 167 GGFAVDNPTLTRFFSIHFM-LPFMIVGLSMSHLMFLHQTGSNNPMGMNSNTDKIPFHPYFNFKDLITLLLLMMIMITMSM 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 1896069875 246 MNPYILGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 1.36e-38

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 133.37  E-value: 1.36e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 259 PANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQIMFWMMTTTVIMLTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1896069875 339 IGKRPVEEPYITTGQMLTMMY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 23-210 4.77e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 133.68  E-value: 4.77e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  23 PAPTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIYLHIGRG 102
Cdd:PRK03735   33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 103 MYYGSYVYSK--TWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAVDNPTLTRFF 180
Cdd:PRK03735  113 FFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1896069875 181 SIH-FMLPFMIVGLSMSHLMFLHQTGSNNPM 210
Cdd:PRK03735  193 AIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 1.53e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 115.97  E-value: 1.53e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875  25 PTNISFWWNLGSMMGMCLIMQMTSGMMLSMHYLPNIETAFDSVAQICREVNSGWMLRTIHANGASMFFTCIYLHIGRGMY 104
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 105 YGSYVYSK--TWMTGTLILLTLMATAFMGYVLPWGQMSFWGATVITNLMSAVPYIGNSLVQWIWGGFAVDNPTLTRFFSI 182
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 1896069875 183 H-FMLPFMIVGLSMSHLMFLHQTGSNNPM 210
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 247-346 2.14e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 58.65  E-value: 2.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896069875 247 NPYILGDPenfnpANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMPSYNKMMFRGNKFYPMNQIMF 326
Cdd:COG5679    59 DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRRPVATAV 133

                          90       100
                  ....*....|....*....|.
gi 1896069875 327 WMMTTTVIMLTWIGKR-PVEE 346
Cdd:COG5679   134 FLFGTLVTLWLGIGAAlPIDK 154
petD CHL00058
cytochrome b6/f complex subunit IV
 248-306 6.58e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 57.32  E-value: 6.58e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1896069875 248 PYILGDPenfnpANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMP 306
Cdd:CHL00058   59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVP 112
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-306 1.86e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 53.26  E-value: 1.86e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1896069875 259 PANPMNTPIHIQPEWYFLFAYAILRSIPNKLGGVIALMSSIMILMIMP 306
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVP 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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