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Conserved domains on  [gi|1896070029|gb|QNJ47170|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Xya sp. INSjdsTAZRAAPEI-44]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-335 8.48e-78

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 241.27  E-value: 8.48e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   1 IFNNPTKIIFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFL 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  81 -PMIAHPLPEFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFMsiFIMFFSISSITMGS 159
Cdd:MTH00160   81 nLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN--FIIIIIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 160 IMGINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQ-FFFSNYNTTYKISILL 238
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQlFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 239 TFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSSSLLTYPEMKWNKPTVTNMSLYMNSIL 318
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318

                         330
                  ....*....|....*..
gi 1896070029 319 LFNFLGLLLTSFFMLLI 335
Cdd:MTH00160  319 SFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-335 8.48e-78

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 241.27  E-value: 8.48e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   1 IFNNPTKIIFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFL 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  81 -PMIAHPLPEFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFMsiFIMFFSISSITMGS 159
Cdd:MTH00160   81 nLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN--FIIIIIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 160 IMGINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQ-FFFSNYNTTYKISILL 238
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQlFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 239 TFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSSSLLTYPEMKWNKPTVTNMSLYMNSIL 318
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318

                         330
                  ....*....|....*..
gi 1896070029 319 LFNFLGLLLTSFFMLLI 335
Cdd:MTH00160  319 SFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 31-278 2.02e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 111.25  E-value: 2.02e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  31 WMGLEINLLSFIPLV-SNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFLPMIAHPLPE------------------FL 91
Cdd:pfam00361   8 YLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDElskaltgglnssgllllfLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  92 ILSVLFLKMGAAPFHFWFPEVINNLSW-NMALILLTWQKIAPMMI------MSYFIPFMSIFIMFFSISSITMGSIMGIN 164
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLirrsllYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 165 QTSIRKILAFSSINHIGWMILAIMI----NESLWSLYFLIYSLMNMIIILMVNNMNI------SFLNQFFFSNYNTTYKI 234
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYrrvhtrNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1896070029 235 SILLTFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMS 278
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 32-289 9.75e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 109.82  E-value: 9.75e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  32 MGLEINLLSFIPLVS-NSKNLLTNQASIKYFIIQAFASSFLLFNflISF---------LPMIAHPLPE------------ 89
Cdd:COG1007   129 LGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYG--ISLlygatgslnLAGIAAALAAgganspllllgl 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  90 FLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPM--------MIMSYFIPFMSIFIMFFSISSITMGSIM 161
Cdd:COG1007   207 VLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFaallrllvEAFPGLAADWQLLLAVLAVLSMTVGNLA 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 162 GINQTSIRKILAFSSINHIGWMILAIMIN--ESLWSL--YFLIYSLMNM---IIILMVNNMNISFLNqffFSNYNTTYKI 234
Cdd:COG1007   287 ALAQTNVKRMLAYSSIAHAGYLLLGLAAGtpLGVSAAlfYLLAYLFMNLgafAVILLLSRKGGEAEE---IEDLAGLARR 363

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896070029 235 SILLTF------FSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:COG1007   364 SPLLALamtiflLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 33-289 8.43e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 80.76  E-value: 8.43e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  33 GLEINLLSFIPLVSNS-KNLLTNQASIKYFIIQAFASSFLLFN----------------FLISFLPMIAHPLPEF---LI 92
Cdd:TIGR01770 130 GLELQSLCFYVLAGLKrKSRFSTEAGLKYFILGAFSSGLLLFGisliygftgslnfedlLLFLSNGMLNISLLLLgivLI 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  93 LSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIA--------PMMIMSYFIPFMSIFIMFFSISSITMGSIMGIN 164
Cdd:TIGR01770 210 LVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlFLYILFGFSEAWQIFLAIIAFLSMLIGNFGALA 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 165 QTSIRKILAFSSINHIGWMILAIMINESLWS----LYFLIYSLMNMIIILMVNNM-------NISFLNQFFFSNYNTTYK 233
Cdd:TIGR01770 290 QKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAFGVLSLLrsykdewIEYISDFAGLFKTNPILA 369

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1896070029 234 ISILLTFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:TIGR01770 370 ILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-335 8.48e-78

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 241.27  E-value: 8.48e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   1 IFNNPTKIIFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFL 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  81 -PMIAHPLPEFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFMsiFIMFFSISSITMGS 159
Cdd:MTH00160   81 nLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN--FIIIIIILSAIIGA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 160 IMGINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQ-FFFSNYNTTYKISILL 238
Cdd:MTH00160  159 IGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQlFNSNNKSKKIKFLLFL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 239 TFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSSSLLTYPEMKWNKPTVTNMSLYMNSIL 318
Cdd:MTH00160  239 NLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFL 318

                         330
                  ....*....|....*..
gi 1896070029 319 LFNFLGLLLTSFFMLLI 335
Cdd:MTH00160  319 SFISLFGLILSSLLFLL 335
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 3-312 2.81e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 191.60  E-value: 2.81e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   3 NNPTKIIFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFL-- 80
Cdd:MTH00105    2 NPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMys 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  81 -----PMIAHPLPEFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFMSI-FIMFFSISS 154
Cdd:MTH00105   82 gqwtiTKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPnLLLTLAILS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 155 ITMGSIMGINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVN-NMNISFLNQFFFSNYNTTYK 233
Cdd:MTH00105  162 ILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMlNSSTTTLSLSHTWNKTPLMT 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 234 ISILLTFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSSSLLTYP-----EMKWNKPTVT 308
Cdd:MTH00105  242 SLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPstnnmKMKWQFENTK 321


                  ....
gi 1896070029 309 NMSL 312
Cdd:MTH00105  322 PMTL 325
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-309 2.18e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 186.57  E-value: 2.18e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   6 TKIIFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFLPM--- 82
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTgqw 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  83 ----IAHPLPEFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFMSIFIMFFS-ISSITM 157
Cdd:MTH00112   85 ditqLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLaILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 158 GSIMGINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQFFFS-NYNTTYKISI 236
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSwTKSPTLNTTL 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1896070029 237 LLTFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSSSLLTYP-----EMKWNKPTVTN 309
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPnttnmMMKWRTKPKKN 322
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 31-298 7.89e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 171.91  E-value: 7.89e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  31 WMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLF----NFLIS---FLPMIAHPLPEFLILSVLFLKMGAA 103
Cdd:MTH00135   30 WMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFasttNAWLTgqwDIQQMSHPLPTTMITLALALKIGLA 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 104 PFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFMSIFIMFFSISSITMGSIMGINQTSIRKILAFSSINHIGWM 183
Cdd:MTH00135  110 PLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWM 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 184 ILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQFFFSNYNTTYKISIL-LTFFSILGLPPFIGFLPKWYIIQSL 262
Cdd:MTH00135  190 ILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTpLILLSLGGLPPLTGFMPKWLILQEL 269

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1896070029 263 IiyNQFIILI-FLVLMSSL-TLYFYMRIIFSSSLLTYP 298
Cdd:MTH00135  270 T--KQDLPLTaTLAALSALlSLYFYLRLSYAMTLTISP 305
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 9-300 1.15e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 161.24  E-value: 1.15e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   9 IFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFLPM------ 82
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTgewtim 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  83 -IAHPLPEFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFM-SIFIMFFSISSITMGSI 160
Cdd:MTH00070   88 nMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLnSNLLIIMGLLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 161 MGINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQFFFSNYNTTYKISI-LLT 239
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMmMLT 247

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896070029 240 FFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSSSLLTYPEM 300
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNT 308
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-317 2.81e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 159.67  E-value: 2.81e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   5 PTKIIFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFLPMIA 84
Cdd:MTH00144    4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  85 HPLPEFLILSvLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFI--PFMSIFIMFFSISSITMGSIMG 162
Cdd:MTH00144   84 WFSMSLLLLG-LCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlYWLAYLLCVISVLSALVGSIGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 163 INQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQFFFSNYNTTYKISILLTFFS 242
Cdd:MTH00144  163 LNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLLS 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896070029 243 ILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSSSLLTYPEMKWNKPTVTNMSLYMNSI 317
Cdd:MTH00144  243 LGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNL 317
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 9-335 3.39e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 160.13  E-value: 3.39e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   9 IFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISF-------LP 81
Cdd:MTH00200    8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAwtsgqwgIS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  82 MIAHPLPEFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFM-SIFIMFFSISSITMGSI 160
Cdd:MTH00200   88 EMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALnSNILLLLGLLSVLVGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 161 MGINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQFFFSNYNTTY-KISILLT 239
Cdd:MTH00200  168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIlSMLLGLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 240 FFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSSSLLTYPE---MKWNKPTVTNMSLYMNS 316
Cdd:MTH00200  248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNqinMMSSWRTKSNSNLLVGL 327

                         330
                  ....*....|....*....
gi 1896070029 317 ILLFNFLGLLLTSFFMLLI 335
Cdd:MTH00200  328 LLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-298 5.94e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 159.33  E-value: 5.94e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   8 IIFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLIS-------FL 80
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQawlsgswSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  81 PMIAHPLPEFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFMSIFIMFF-SISSITMGS 159
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILcGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 160 IMGINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQFF-FSNYNTTYKISILL 238
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNkLSQLNPISAFLFIL 246

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 239 TFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSSSLLTYP 298
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFP 306
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-292 8.26e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 153.40  E-value: 8.26e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   5 PTKIIFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFLP--M 82
Cdd:MTH00011    6 PTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFpsL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  83 IAHPLPEFLILSVLfLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPF-MSIFIMFFSISSITMGSIM 161
Cdd:MTH00011   86 LKNITALMLLVSLM-LKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHnILPMMTSMAAMSALAGGLG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 162 GINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQFF-FSNYNTTYKISILLTF 240
Cdd:MTH00011  165 GMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSkISSMSQTTSMSLFIML 244

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1896070029 241 FSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSS 292
Cdd:MTH00011  245 LSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNF 296
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-304 4.31e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 143.27  E-value: 4.31e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029   9 IFFFTLILGSMISISSSSYWGTWMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFLPMIAHPLP 88
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  89 EFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFMsIFIMFFSISSITMGSIMGINQTSI 168
Cdd:MTH00197   82 VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSF-MGLLICSVLSSLIGGIGGMNQSNI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 169 RKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQFFFSNYNTT-YKISILLTFFSILGLP 247
Cdd:MTH00197  161 RQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSsNLVFLGLSFLSLGGLP 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1896070029 248 PFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRIIFSSSLLTYPEMKWNK 304
Cdd:MTH00197  241 PLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLM 297
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 31-278 2.02e-28

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 111.25  E-value: 2.02e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  31 WMGLEINLLSFIPLV-SNSKNLLTNQASIKYFIIQAFASSFLLFNFLISFLPMIAHPLPE------------------FL 91
Cdd:pfam00361   8 YLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDElskaltgglnssgllllfLL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  92 ILSVLFLKMGAAPFHFWFPEVINNLSW-NMALILLTWQKIAPMMI------MSYFIPFMSIFIMFFSISSITMGSIMGIN 164
Cdd:pfam00361  88 ILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGYGLirrsllYLPSSPFIQQILLILAIISMLLGSLAALV 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 165 QTSIRKILAFSSINHIGWMILAIMI----NESLWSLYFLIYSLMNMIIILMVNNMNI------SFLNQFFFSNYNTTYKI 234
Cdd:pfam00361 168 QTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYrrvhtrNIRDYGGLAKTMPILAL 247

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1896070029 235 SILLTFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMS 278
Cdd:pfam00361 248 VFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 32-289 9.75e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 109.82  E-value: 9.75e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  32 MGLEINLLSFIPLVS-NSKNLLTNQASIKYFIIQAFASSFLLFNflISF---------LPMIAHPLPE------------ 89
Cdd:COG1007   129 LGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYG--ISLlygatgslnLAGIAAALAAgganspllllgl 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  90 FLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPM--------MIMSYFIPFMSIFIMFFSISSITMGSIM 161
Cdd:COG1007   207 VLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFaallrllvEAFPGLAADWQLLLAVLAVLSMTVGNLA 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 162 GINQTSIRKILAFSSINHIGWMILAIMIN--ESLWSL--YFLIYSLMNM---IIILMVNNMNISFLNqffFSNYNTTYKI 234
Cdd:COG1007   287 ALAQTNVKRMLAYSSIAHAGYLLLGLAAGtpLGVSAAlfYLLAYLFMNLgafAVILLLSRKGGEAEE---IEDLAGLARR 363

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896070029 235 SILLTF------FSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:COG1007   364 SPLLALamtiflLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 31-289 5.30e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.88  E-value: 5.30e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  31 WMGLEINLLSFIPLV-SNSKNLLTNQASIKYFIIQAFASSFLLF----------NFLISFLPMIAHPLPEF--------- 90
Cdd:MTH00196   19 YLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFgcallcgttgGLHLSYINLVLNSGQSFssvsvpigy 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  91 -LILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFMSIFiMFFSISSITMGSIMGINQTSIR 169
Cdd:MTH00196   99 lLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNIL-LIGGLFSLFVGAIGALNQTKIK 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 170 KILAFSSINHIGWMILAIMIN--ESLWS--LYFLIYSLMNM--IIILMVNNMNISFLNQFF-FSNYNTTYKISILLTFFS 242
Cdd:MTH00196  178 RLLAYSGIGHMGFVLWGIEIGsfESIQAslVYLFIYIIMSIcvFSIILALNVYKNLIIEFSgLSRRLPILAITLALTFLS 257

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1896070029 243 ILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:MTH00196  258 IAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
32-289 1.69e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.58  E-value: 1.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  32 MGLEINLLSFIPLVS-NSKNLLTNQASIKYFIIQAFASSFLLF------------NFLISFLPMIAHPLPE-FLILSVLF 97
Cdd:PRK05777  130 LGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygatgslSFAGIAKALADGSGNSlLLLFGLVF 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  98 L------KMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPM--------MIMSYFIPFMSIFIMFFSISSITMGSIMGI 163
Cdd:PRK05777  210 LlvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFavllrllvVAFGGLSEDWQQVLAIIAIASMLVGNLAAL 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 164 NQTSIRKILAFSSINHIGWMILAIMI-----NESLWsLYFLIYSLMNM---IIILMVNNMNISFLNqffFSNYNTTYKIS 235
Cdd:PRK05777  290 SQTNIKRLLAYSSIAHAGYLLVGLAAgtaegYSAVL-FYLLAYLFMTLgafGVISLLRRKGGEAES---ISDFAGLSKRS 365

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 236 ILLTF------FSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:PRK05777  366 PLLAAvmtifmLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 31-289 4.25e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 81.60  E-value: 4.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  31 WMGLEINLLSFIPLVSNSKN-LLTNQASIKYFIIQAFASSFLLFNFLI--------SFLPMIAHPLPEF---LILSVLFL 98
Cdd:MTH00199  123 YLAIELQTLTLFILVALKRDsAYSTEAGLKYFVLGAVSSGLFLFGCALlygltgetSIQGINSILTGDVgkiLITISLLF 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  99 KMGAAPFHFWFPEVINNLSWNMALILLTWQKIAPMMIMSYFIPFMSIfIMFFSISSITMGSIMGINQTSIRKILAFSSIN 178
Cdd:MTH00199  203 KLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNV-VLICAVLSIIYGAIGALNQTKIKRLLAYSGIG 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 179 HIGWMILAIMI--NESLWS--LYFLIYSLMNM---IIILMVNNMNISFLNQFFFSNYNTTYKISILLTFFSILGLPPFIG 251
Cdd:MTH00199  282 HMGFILFGVAIgsFESIQAslIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLSRKNPVIALTLALTFLSIAGIPPLAG 361

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1896070029 252 FLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:MTH00199  362 FLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVV 399
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 33-289 8.43e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 80.76  E-value: 8.43e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  33 GLEINLLSFIPLVSNS-KNLLTNQASIKYFIIQAFASSFLLFN----------------FLISFLPMIAHPLPEF---LI 92
Cdd:TIGR01770 130 GLELQSLCFYVLAGLKrKSRFSTEAGLKYFILGAFSSGLLLFGisliygftgslnfedlLLFLSNGMLNISLLLLgivLI 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  93 LSVLFLKMGAAPFHFWFPEVINNLSWNMALILLTWQKIA--------PMMIMSYFIPFMSIFIMFFSISSITMGSIMGIN 164
Cdd:TIGR01770 210 LVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlFLYILFGFSEAWQIFLAIIAFLSMLIGNFGALA 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 165 QTSIRKILAFSSINHIGWMILAIMINESLWS----LYFLIYSLMNMIIILMVNNM-------NISFLNQFFFSNYNTTYK 233
Cdd:TIGR01770 290 QKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAFGVLSLLrsykdewIEYISDFAGLFKTNPILA 369

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1896070029 234 ISILLTFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:TIGR01770 370 ILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 31-289 4.11e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.57  E-value: 4.11e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  31 WMGLEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISF-------LPMIAHPLPEF----------LIL 93
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYgatgtlnMADLAARLAELdpglllaafaLLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  94 SVLFLKMGAAPFHFWFPE-----------VINNLSWNMALILLTwqKIAPMMIMSYFIPFMSIFIMFFSISSITMGSIMG 162
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVYAIL--RVLTLLFGADPALFLGTLLLVLGLLTMLVGALGA 290

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 163 INQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMI-----------IILMVNNMNISFLNQFFFSNYNTT 231
Cdd:COG0651   291 LAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALakallflaagaIERATGTRDLDKLGGLGKRMPLTA 370

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1896070029 232 ykISILLTFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:COG0651   371 --AAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIF 426
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-289 2.89e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 67.21  E-value: 2.89e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  34 LEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFNFLISF-------LPMIAHPLPE--------FLILSVLFL 98
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYgvtgtlnMADLAGALAEnptvvtafGFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  99 KMGAAPFHFWFPEVINNLS-WNMALILLTWQKIAP-MMIMSYFIPF---------MSIFIMFFSISSITMGSIMGINQTS 167
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAVyALIRIYFTVFggdfrfalgLGWLLAVLALLSMLVGSLAALGQDD 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 168 IRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMI-----------IILMVNNMNISFLNQFFFSNYNTTYKISI 236
Cdd:PRK08375  295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALmkgalflaagaIEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1896070029 237 LLtfFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:PRK08375  375 AS--LSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIW 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 90-289 1.95e-09

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 58.72  E-value: 1.95e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  90 FLILSVLFlKMGAAPFHFWFPEVINNL-SWNMALILLTWQKIAPMMIMSYFIpfMSIFIMFFSISSITMGSIMGINQTSI 168
Cdd:MTH00198  304 FITVAILF-KLAAAPFHMWTPDVYEGApTPTTALIAIIPKFTVYILLTSLVI--TSKLLLSVAIISLVVGAFGALNQTRI 380

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 169 RKILAFSSINHIGWMILAI-------MINESLWSLYFLIYSLMNMIIILMVNNMNISFLNQF----FFSNYNTTYKI--- 234
Cdd:MTH00198  381 KRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGTRTPTSRqrdgSFGNYNLVRRLvdl 460

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896070029 235 ------------SILLTFFSILGLPPFIGFLPKWYII---------QSLIIYnqFIILIFLVLMSSLTLYFYMRII 289
Cdd:MTH00198  461 tilsrgqpyiafSLAIVFLSLAGIPPLLGFLGKWFILvgsikiafsSSLSIY--YLVALFAIICTCISAFYYIRIV 534
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
53-305 2.52e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 55.06  E-value: 2.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  53 TNQASIKYFIIQAFASSFLLF--NFLISF------LPMIAHPLPE-----------FLILSVLFlKMGAAPFHFWFPEVI 113
Cdd:PRK02504  159 SNEAALKYLLIGAASSAIFLYgsSLLYGLsggstqLSAIALALITspslglalalvFVIAGIAF-KISAVPFHQWTPDVY 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 114 NNLSWNMALILLTWQK-----IAPMMIMSYFIPFMSIFIMFFS---ISSITMGSIMGINQTSIRKILAFSSINHIGWMIL 185
Cdd:PRK02504  238 EGSPTPVVAFLSVGSKaagfaLAIRLLVTAFPSFDEQWKLLFTalaILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMI 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 186 AIMINE----SLWSLYFLIYSLMN----MIIILMVNNMNISFLnqfffSNYNTTYKISILLT------FFSILGLPPFIG 251
Cdd:PRK02504  318 GLVAGTeagyASMVFYLLAYLFMNlgafACVILFSLRTGTDQI-----SDYAGLYQKDPLLTlglslcLLSLGGIPPLAG 392

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1896070029 252 FLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII----------FSSSLLTYPEMKWNKP 305
Cdd:PRK02504  393 FFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRVIkmmvvkepqeMSDVVKNYPEINWNLP 456
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-291 2.92e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.10  E-value: 2.92e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  55 QASIKYFIIQAFASSFLLFNFLISF-------LPMIAHPLPE----------FLILSVLFLKMGAAPFHFWFPEVINNL- 116
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLYgqygtlnMAYLAVKMSEnptvvakialALFIAGLAMKSGAVPVHMWLPDAYPAAp 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 117 -SWNMALILLTWQKIAPMMIMSYFIPFMSI-------FIMFFSISSITMGSIMGINQTSIRKILAFSSINHIGWMILAIM 188
Cdd:PRK08376  252 sSISAMLLVIKQAGLYALARVLFSIYGPAInlatvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLG 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 189 INESLWSLYFL-----------IYSLMNMIII---------LMVNNMNISFLNQFFFSNYNTTYK-ISILLTFFSILGLP 247
Cdd:PRK08376  332 VGLAALGDPAMasygeialaggIYHIVNHALYkallfltagAVIYETGTRNLNELGGLARTMPKTtIAFLIGAAAIVGLP 411

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1896070029 248 PFIGFLPKWYIIQSLIIYNQFIILIFLVlMSSLTLYFYMRIIFS 291
Cdd:PRK08376  412 PFNGFASKWLIYESSALFNPILGVIAMI-GSVLTLASFVKVFHT 454
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 48-304 8.53e-08

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 52.57  E-value: 8.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  48 SKNLLTNQASIKYFIIQAFASS-FLLFNFLisflpmiahplpeFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALILLT 126
Cdd:MTH00091   31 NKGMGSYSSLFNYFVLQESLGLlFLLFSFG-------------YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLT 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 127 WQKIAPMMIMSYFIPFMSIFIMFFsisSITMGSIMGINQTSIRKILAFSSINHIGWMILAIMIN-ESLWSLYFLIYSLMN 205
Cdd:MTH00091   98 FQKLPFLLVLLQFFSKNFFFLLLF---GLLICFFQMFLLKSYKNLLILSSTESFNWLILSFFFSfFNVFFLFFYYFLLML 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 206 MIIILMVNNMNISFLNqfffsnynttykisiLLTFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFY 285
Cdd:MTH00091  175 FLIPKFNNVNKLNFVS---------------WETLLVFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLS 239

                         250
                  ....*....|....*....
gi 1896070029 286 MRIIFSSSLLTYPEMKWNK 304
Cdd:MTH00091  240 FWLVNLSTKLFLMLFKYNK 258
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-289 7.76e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 50.50  E-value: 7.76e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  34 LEINLLSFIPLVSNSKNLLTNQASIKYFIIQAFASSFLLFN--FL--------ISFLPMIAHPLPE--------FLILSV 95
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigFLyaitgtlnMGDMFLIIQDLPTnraiqigvLFIMVG 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  96 LFLKMGAAPFHFWfpeVINNLSWNMALILLTWQKIAPMMIMSYFI---------------PFMSIFIMFFSISSITMGSI 160
Cdd:PRK12662  219 LFIKAALFPFHKW---LIQAYSEAPSFISVFFSGTSTKVMIYLIIrivydvfkanfvfttLPFNNVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 161 MGINQTSIRKILAFSSINHIGWMILAIMINE----SLWSLYFLIYSLMNMIIILMVNNMNISFlNQFFFSNYNTTYK--- 233
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTyyglAAAVAYIVNHSIVKSALFMVSGSISYHF-GTTKLEDCLNLWKsmp 374

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1896070029 234 ---ISILLTFFSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:PRK12662  375 kitLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIV 433
ndhB CHL00049
NADH dehydrogenase subunit 2
 48-289 1.40e-06

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 49.62  E-value: 1.40e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  48 SKNLLTNQASIKYFIIQAFASSFLLFNFL------------------ISFLPMIAHP---LPEFLILSVLFLKMGAAPFH 106
Cdd:CHL00049  155 KKDVRSNEATMKYLLMGGASSSILVYGFSwlyglsggeielqeivngLINTQMYNSPgisIALIFITVGIGFKLSLAPFH 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 107 FWFPEVINNLSWNMALILLTWQKIAPMM--------IMSYFIPFMSIFIMFFSISSITMGSIMGINQTSIRKILAFSSIN 178
Cdd:CHL00049  235 QWTPDVYEGSPTPVVAFLSVTSKVAASAlatrifdiPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 179 HIGWMILAIM---INESLWSL--YFLIYSLMNM-----III--LMVNNMNIsflnqfffSNYNTTYKISILLTFF----- 241
Cdd:CHL00049  315 QIGYVIIGIIvgdSNDGYASMitYMLFYIFMNLgtfacIVLfgLRTGTDNI--------RDYAGLYTKDPFLALSlalcl 386

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1896070029 242 -SILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLTLYFYMRII 289
Cdd:CHL00049  387 lSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKII 435
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 84-276 6.57e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.56  E-value: 6.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  84 AHPLPEFLILSVLFLKMGAAPFHFWFPEVINNLSWNMALIL---LTWQKIAPMMIMSYFIPFMSIFIMFFSISSITMGSI 160
Cdd:PRK07234  182 ADPEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLsgvVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLGVL 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 161 MGINQTSIRKILAFSSINHIGWMILAIMINeslwSLYFLIYSLMNMIIILMVNNMNISFLNQFFFSNYNTTYKISILLTF 240
Cdd:PRK07234  262 FALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPLTMAS 337

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1896070029 241 FSILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVL 276
Cdd:PRK07234  338 FSIAGFPLLAGFVSKVLTLKNLLPWQAIALNLAAVG 373
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 88-290 2.28e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  88 PEFLILSVLFLKMGAA------PFHFWFPEVinnlswnM-------ALI-----------LLTwqKIAPMMIMSyfiPFM 143
Cdd:COG1009   207 SPLLTLILLLLLLGAFgksaqfPLHFWLPDA-------MegptpvsALLhaatmvkagvyLLA--RLSPLFALS---PVW 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 144 SIFIMFFSISSITMGSIMGINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIY-----SLMNM---IIILMVNNM 215
Cdd:COG1009   275 LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLThaffkALLFLgagSVIHATGTR 354

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896070029 216 NISFLNQfFFSNYNTTYkISILLTFFSILGLPPFIGFLPKWYIIQSLIIYN--QFIILIFLVLMSSLTLYFYMRIIF 290
Cdd:COG1009   355 DIRKMGG-LRKKMPITA-ITFLIGALSLAGIPPFAGFFSKEAILEAALEAGglGPLLLAVALLGAFLTAFYSFRLFF 429
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 56-187 3.88e-04

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 41.85  E-value: 3.88e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  56 ASIKYFIIQAFASSFLLFNFLI---------SFLPMIAHPLPEF--LILSVLFL-----KMGAAPFHFWFPEVINNLSWN 119
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGlyflgggtfDLLELLNLPLPFGvqTWLFLAFFiafavKVPLFPLHTWLPDAHVEAPTA 236

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896070029 120 MALILL-TWQKIAPMMIMSYFIPFM-------SIFIMFFSISSITMGSIMGINQTSIRKILAFSSINHIGWMILAI 187
Cdd:TIGR01972 237 GSVILAgVLLKMGTYGFLRFNLPLFpdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGI 312
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 91-287 4.91e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 41.66  E-value: 4.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  91 LILSVLFLKMGAAPFHFWFPE-----------VINNLSWNMALILLTwqKIAPMMIMSYFIPFMSIFIMFFSISSITMGS 159
Cdd:PRK08676  211 FIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGIYGIL--RLSALLRQSGAAEQFSNVLIGLGIFSIAVAA 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 160 IMGINQTSIRKILAFSSINHIGWMILAIMINESLWSLYFLIYSLMNMII---------ILMVNNMNISFLNQFFFSNYNT 230
Cdd:PRK08676  289 FSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVksglffsagILHRQYRSDRFDRIFDVFRLQP 368

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 231 TYKISILLTFFSILGLPPFIGFLPKWYIIQSLI---IYNQFIILIFLVLMSSLTLYFYMR 287
Cdd:PRK08676  369 VAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGgisVWLVLAVLLLLLLAASSFAIFLLK 428
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 56-270 2.75e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 39.59  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  56 ASIKYFIIQAFAS-SFLLFNFLISFL-----------PMIAHPLPEFLILSVLFL------KMGAAPFHFWFPEV----- 112
Cdd:PRK08668  148 ASLKYFVLSAIGAyAMLYAIFLIYAKtgtfdfadisqGLINDTSTGFALIVFLFLlafgvaKAGIFPLHVWAPDAyseap 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 113 -------------INNLSWNMALILLTWQKIAPMMIMSYFIPFMSIFIMFFSISSITMGSIMGINQTSIRKILAFSSINH 179
Cdd:PRK08668  228 qsfsavlsgqlskLGAYGFLLVLYVLPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVAN 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 180 IGWMILAIMINESLW---------------SLYFLIYSLmnmiIILMVNNMNISFLNQFFFSNYNT--TYKISILltffS 242
Cdd:PRK08668  308 GGYILVGLGLGTSLGfagglfhvfnhalfkGLFFLIFAA----VIYRTGTTKISEMGGLIEKMPFTfaMYLVAII----S 379

                         250       260
                  ....*....|....*....|....*...
gi 1896070029 243 ILGLPPFIGFLPKWYIIQSLIIYNQFII 270
Cdd:PRK08668  380 LAGIPPMSGFASKWLIFEALISKGMPIT 407
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-187 3.63e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 38.91  E-value: 3.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029  55 QASIKYFIIQAFASSFLLFNFLI----------SFLPMIAHPLP---EFLILSVLFL----KMGAAPFHFWFPE------ 111
Cdd:COG1008   161 YAAIKFFLYTLAGSLLMLVAILAlyflagaltfDIAELAAAPLPltaQLLLFLAFFIafavKVPMFPFHTWLPDahveap 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 112 ----VInnlswnMALILLtwqKIA---------PMM--IMSYFIPFMsifiMFFSISSITMGSIMGINQTSIRKILAFSS 176
Cdd:COG1008   241 tagsVL------LAGVLL---KMGgygllrfalPLFpeASAYFAPLL----AALGVIGIIYGALVALAQTDLKRLIAYSS 307

                         170
                  ....*....|.
gi 1896070029 177 INHIGWMILAI 187
Cdd:COG1008   308 VSHMGFVLLGI 318
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 134-288 4.59e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 38.78  E-value: 4.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 134 MIMSYFIPFMSIFIMFFSISSITMGSIMGINQTSIRKILAFSSINHIGWMILAIMINESLwSLYFLIYSLMNMIIILMVN 213
Cdd:PRK07691  265 LFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTES-GMIGAIYYLIHDMIVKAAL 343

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070029 214 NMNISFLnqFFFSNYNTTYKISILL--------TFF----SILGLPPFIGFLPKWYIIQSLIIYNQFIILIFLVLMSSLT 281
Cdd:PRK07691  344 FLLIGIM--IKITGTTDLKKMGGLIkrypvlgwMFFiaalSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLV 421


                  ....*..
gi 1896070029 282 LYFYMRI 288
Cdd:PRK07691  422 LYSVIKI 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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