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Conserved domains on  [gi|1896070057|gb|QNJ47184|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Systella rafflesii]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 2.00e-88

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 268.62  E-value: 2.00e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   1 INNNMSNLLFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  81 KNSIFkenTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYCMKTeLLFMMTTLLSIMF 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN-NFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 161 GMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 241 MIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENSWMWNKKKNLNILITM 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1896070057 321 MTIISSAGMMMSPTMTIMF 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 2.00e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 268.62  E-value: 2.00e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   1 INNNMSNLLFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  81 KNSIFkenTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYCMKTeLLFMMTTLLSIMF 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN-NFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 161 GMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 241 MIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENSWMWNKKKNLNILITM 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1896070057 321 MTIISSAGMMMSPTMTIMF 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-282 6.34e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.61  E-value: 6.34e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  25 TSWLGVWVGLEMNLLSFIPLL-SNSKEMTENEASIKYFMIQAMASTMLLFSI-LILLMKNSIFKENTIISSMMISSSLLM 102
Cdd:pfam00361   2 NDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGIsLMYNYTGTLSFDELSKALTGGLNSSGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 103 -------------KMGAAPLHFWFPEVMKSSSWNNCMIL-MTWQKITPMM-------MLSYCMKTELLFMMTTLLSIMFG 161
Cdd:pfam00361  82 lllfllilvgflfKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGlirrsllYLPSSPFIQQILLILAIISMLLG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 162 MIGGLNQTNLRQLMAYSSISHMGWMMSTIILNEN----LWENYFVMYSILSMNVILMF-----KKMNSYFINQMYSTLNM 232
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAgsviyRRVHTRNIRDYGGLAKT 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1896070057 233 NTLNKIMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMT 282
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-292 2.64e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.94  E-value: 2.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  17 GTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTE-NEASIKYFMIQAMASTMLLFSIL-------------ILLMKN 82
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFsTEAGLKYFILGAFSSGLLLFGISliygftgslnfedLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  83 SIFKENTIISS--MMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKIT---PMMMLS-YCMKT-----ELLFM 151
Cdd:TIGR01770 194 NGMLNISLLLLgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFlYILFGfseawQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 152 MTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGW-MMSTIILNENLWEN---YFVMYSILSMNVILMFKKMNSYFINQMY 227
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAvlfYIFIYALMSLGAFGVLSLLRSYKDEWIE 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896070057 228 STLNMNTLNK------IMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRI 292
Cdd:TIGR01770 354 YISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 3.17e-18

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 85.17  E-value: 3.17e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   8 LLFLSTTmmGTLLSISTTSWLGVWVGLEMNLLSFIPLLS-NSKEMTENEASIKYFMIQAMASTMLLFSI-LILLMKNSI- 84
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGIsLLYGATGSLn 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  85 FKENTIISSMMISSSLLM-------------KMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMML---------SY 142
Cdd:COG1007   185 LAGIAAALAAGGANSPLLllglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 143 CMKTELLFMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTII-LNENLWEN---YFVMYSIlsMN-----VIL 213
Cdd:COG1007   265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAaGTPLGVSAalfYLLAYLF--MNlgafaVIL 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 214 MFKkmNSYFINQMYSTLNMntLNK------IMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLY 287
Cdd:COG1007   343 LLS--RKGGEAEEIEDLAG--LARrspllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418


                  ....*
gi 1896070057 288 YYMRI 292
Cdd:COG1007   419 YYLRV 423
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 2.00e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 268.62  E-value: 2.00e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   1 INNNMSNLLFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  81 KNSIFkenTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYCMKTeLLFMMTTLLSIMF 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN-NFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 161 GMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 241 MIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENSWMWNKKKNLNILITM 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1896070057 321 MTIISSAGMMMSPTMTIMF 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 4-325 4.64e-62

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 201.31  E-value: 4.64e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   4 NMSNLLFL-STTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLMKN 82
Cdd:MTH00041    2 NRNVLIFLiTSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  83 ---SIFKENTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYCMKTELLFMMTTL--LS 157
Cdd:MTH00041   82 gswSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCgiLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 158 IMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNK 237
Cdd:MTH00041  162 VLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 238 IMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENSWMWNKKKNLNIL 317
Cdd:MTH00041  242 FLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNI 321


                  ....*...
gi 1896070057 318 ITMMTIIS 325
Cdd:MTH00041  322 TVYGVILS 329
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 3-339 1.86e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 199.66  E-value: 1.86e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   3 NNMSNLLFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLMKN 82
Cdd:MTH00112    2 NPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  83 S---IFKENTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPM---MMLSYCMKTELLFMMTtLL 156
Cdd:MTH00112   82 GqwdITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLtllLMTSNSLNPTLLLTLA-IL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 157 SIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLN 236
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 237 KIMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENSWM---WNKKKN 313
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMmmkWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1896070057 314 LNILITMMTIISSAGMMMSPTMTIMF 339
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-339 2.48e-60

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 196.99  E-value: 2.48e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   8 LLFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLMKN---SI 84
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSgqwTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  85 FKENTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMML---SYCMKTELLFMMTtLLSIMFG 161
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTLA-ILSILIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 162 MIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMMM 241
Cdd:MTH00105  166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 242 IPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENS-----WMWNKKKNLNI 316
Cdd:MTH00105  246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNnmkmkWQFENTKPMTL 325

                         330       340
                  ....*....|....*....|...
gi 1896070057 317 LITmMTIISSAGMMMSPTMTIMF 339
Cdd:MTH00105  326 LPT-LIILSTMLLPLTPMLSILE 347
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 10-339 9.50e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 185.12  E-value: 9.50e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  10 FLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILI---LLMKNSIFK 86
Cdd:MTH00070    9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawFTGEWTIMN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  87 ENTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMML---SYCMKTELLFMMTtLLSIMFGMI 163
Cdd:MTH00070   89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLiqiSHLLNSNLLIIMG-LLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 164 GGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMMMIP 243
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 244 LLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENS---WMWNKKKNLNILITM 320
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSnskLYWRFKNKTNNLLSL 327

                         330
                  ....*....|....*....
gi 1896070057 321 MTIISSAGMMMSPTMTIMF 339
Cdd:MTH00070  328 TIILSLMLLPITPTILNLF 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 8-339 3.90e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 178.24  E-value: 3.90e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   8 LLFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLMKNSIFKE 87
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  88 NTIISSMMISSSL---LMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLS--YCMKTELLFMMTTLLSIMFGM 162
Cdd:MTH00200   87 SEMLGPLSETLILlalALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 163 IGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMMMI 242
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 243 PLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENSWM---WNKKKNLNILIT 319
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMmssWRTKSNSNLLVG 326

                         330       340
                  ....*....|....*....|
gi 1896070057 320 MMTIISSAGMMMSPTMTIMF 339
Cdd:MTH00200  327 LLLLLSILGLPLTPQLLFLF 346
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-332 3.92e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 175.07  E-value: 3.92e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   5 MSNLLFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLMKNsi 84
Cdd:MTH00144    4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLS-- 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  85 fkeNTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYC---MKTELLFMMTTLLSIMFG 161
Cdd:MTH00144   82 ---FSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFldlYWLAYLLCVISVLSALVG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 162 MIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMySTLNMNTLNKIMMM 241
Cdd:MTH00144  159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL-GSLKPSYKTGLSII 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 242 IPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENSWMWNKKknLNILITMM 321
Cdd:MTH00144  238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV--LNSSIISL 315

                         330
                  ....*....|.
gi 1896070057 322 TIISSAGMMMS 332
Cdd:MTH00144  316 NLLGGLLFLLL 326
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-337 8.10e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 169.08  E-value: 8.10e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   9 LFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLMKNSIFken 88
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLS--- 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  89 tIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYCMKTELLFMMTTLLSIMFGMIGGLNQ 168
Cdd:MTH00197   79 -LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 169 TNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMMMIPLLSIG 248
Cdd:MTH00197  158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 249 GMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMkypeNSWMWNKKKNLNILITMMTIIssaG 328
Cdd:MTH00197  238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLIL----SNWMINFLMKINLLYSGLFIL---L 310


                  ....*....
gi 1896070057 329 MMMSPTMTI 337
Cdd:MTH00197  311 MMMLPLLMI 319
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-339 2.47e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 165.75  E-value: 2.47e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   9 LFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSIL----------IL 78
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTtnawltgqwdIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  79 LMKNSIfkentiiSSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPM-MMLSYCMKTELLFMMTTLLS 157
Cdd:MTH00135   88 QMSHPL-------PTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFaLILQIAPTNPTLLITLGLTS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 158 IMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNK 237
Cdd:MTH00135  161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 238 IMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENSWM---WNKKKNL 314
Cdd:MTH00135  241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGttpWRLPSTQ 320

                         330       340
                  ....*....|....*....|....*.
gi 1896070057 315 NILITMMTIISSAGMM-MSPTMTIMF 339
Cdd:MTH00135  321 LTLPLAISTTATLMLLpLTPAILALL 346
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-299 4.33e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 156.86  E-value: 4.33e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   8 LLFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLMKNSIFKE 87
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  88 NTiisSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYCMKTELLFMMTTL--LSIMFGMIGG 165
Cdd:MTH00011   89 IT---ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMaaMSALAGGLGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 166 LNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMMMIPLL 245
Cdd:MTH00011  166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1896070057 246 SIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLM 299
Cdd:MTH00011  246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-292 1.04e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.10  E-value: 1.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  16 MGTLLSISTTSWLGVWVGLEMNLLS-FIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSI----------------LIL 78
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSlFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsyinLVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  79 LMKNSIFKENTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYCMKTELLFMMTTLLSI 158
Cdd:MTH00196   84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 159 MFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILN--ENLWEN--YFVMYSILSMNVILMFKKMNSY--FINQMYSTLNM 232
Cdd:MTH00196  164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGsfESIQASlvYLFIYIIMSICVFSIILALNVYknLIIEFSGLSRR 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 233 NTLNKIMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRI 292
Cdd:MTH00196  244 LPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 25-282 6.34e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 96.61  E-value: 6.34e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  25 TSWLGVWVGLEMNLLSFIPLL-SNSKEMTENEASIKYFMIQAMASTMLLFSI-LILLMKNSIFKENTIISSMMISSSLLM 102
Cdd:pfam00361   2 NDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGIsLMYNYTGTLSFDELSKALTGGLNSSGL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 103 -------------KMGAAPLHFWFPEVMKSSSWNNCMIL-MTWQKITPMM-------MLSYCMKTELLFMMTTLLSIMFG 161
Cdd:pfam00361  82 lllfllilvgflfKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGlirrsllYLPSSPFIQQILLILAIISMLLG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 162 MIGGLNQTNLRQLMAYSSISHMGWMMSTIILNEN----LWENYFVMYSILSMNVILMF-----KKMNSYFINQMYSTLNM 232
Cdd:pfam00361 162 SLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAgsviyRRVHTRNIRDYGGLAKT 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1896070057 233 NTLNKIMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMT 282
Cdd:pfam00361 242 MPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-292 2.64e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.94  E-value: 2.64e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  17 GTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTE-NEASIKYFMIQAMASTMLLFSIL-------------ILLMKN 82
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRFsTEAGLKYFILGAFSSGLLLFGISliygftgslnfedLLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  83 SIFKENTIISS--MMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKIT---PMMMLS-YCMKT-----ELLFM 151
Cdd:TIGR01770 194 NGMLNISLLLLgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFlYILFGfseawQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 152 MTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGW-MMSTIILNENLWEN---YFVMYSILSMNVILMFKKMNSYFINQMY 227
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKAvlfYIFIYALMSLGAFGVLSLLRSYKDEWIE 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896070057 228 STLNMNTLNK------IMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRI 292
Cdd:TIGR01770 354 YISDFAGLFKtnpilaILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 16-292 4.30e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 90.46  E-value: 4.30e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  16 MGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMT-ENEASIKYFMIQAMASTMLLFSILIL---------LMKNSIF 85
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAySTEAGLKYFVLGAVSSGLFLFGCALLygltgetsiQGINSIL 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  86 KENTIISSMMISSSLlmKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYCMKTELLFMMTTLLSIMFGMIGG 165
Cdd:MTH00199  188 TGDVGKILITISLLF--KLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGA 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 166 LNQTNLRQLMAYSSISHMGWMMSTIIL--NENLWEN--YFVMYSILSMNV--ILMFKKMNSYFINQMYSTLNMNTLNKIM 239
Cdd:MTH00199  266 LNQTKIKRLLAYSGIGHMGFILFGVAIgsFESIQASliYMIIYVIMSICSfsIILSLKLTKGLIVEVSGLSRKNPVIALT 345

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1896070057 240 MMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRI 292
Cdd:MTH00199  346 LALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 3.17e-18

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 85.17  E-value: 3.17e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   8 LLFLSTTmmGTLLSISTTSWLGVWVGLEMNLLSFIPLLS-NSKEMTENEASIKYFMIQAMASTMLLFSI-LILLMKNSI- 84
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGIsLLYGATGSLn 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  85 FKENTIISSMMISSSLLM-------------KMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMML---------SY 142
Cdd:COG1007   185 LAGIAAALAAGGANSPLLllglvlvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 143 CMKTELLFMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTII-LNENLWEN---YFVMYSIlsMN-----VIL 213
Cdd:COG1007   265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAaGTPLGVSAalfYLLAYLF--MNlgafaVIL 342

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 214 MFKkmNSYFINQMYSTLNMntLNK------IMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLY 287
Cdd:COG1007   343 LLS--RKGGEAEEIEDLAG--LARrspllaLAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418


                  ....*
gi 1896070057 288 YYMRI 292
Cdd:COG1007   419 YYLRV 423
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-292 8.79e-16

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 77.94  E-value: 8.79e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   8 LLFLSTTMmGTLLSISTTSWLGVWVGLE-MNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSI-LILLMKNSI- 84
Cdd:PRK05777  107 LLVLFALL-GMMVMVSANDLLTLFLGLElLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMsLLYGATGSLs 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  85 FKENTIISSMMISSSLLM-------------KMGAAPLHFWFPEV-----------MKSSSWNNCMILMTwqKITPMMML 140
Cdd:PRK05777  186 FAGIAKALADGSGNSLLLlfglvfllvglafKLSAVPFHMWTPDVyegaptpvtafLATAPKIAAFAVLL--RLLVVAFG 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 141 SYCMKTELLFMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWEN----YFVMYSILSM---NVIL 213
Cdd:PRK05777  264 GLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSavlfYLLAYLFMTLgafGVIS 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 214 MFKKMNsyFINQMYSTLNMntLNK------IMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLY 287
Cdd:PRK05777  344 LLRRKG--GEAESISDFAG--LSKrspllaAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAF 419


                  ....*
gi 1896070057 288 YYMRI 292
Cdd:PRK05777  420 YYLRV 424
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 8-292 5.33e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.18  E-value: 5.33e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   8 LLFLSTTMMGTLLsisTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILIL--------- 78
Cdd:COG0651   113 FLLLLAGMNGAFL---TGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLygatgtlnm 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  79 -LMKNSIFKENTIISSMMISSSLL---MKMGAAPLHFWFPEVMKSSSWNNC-------------MILMTWQKITPMMMLS 141
Cdd:COG0651   190 aDLAARLAELDPGLLLAAFALLLVgfgIKAALFPLHFWLPDAYPAAPSPVSallsglltkvgvyAILRVLTLLFGADPAL 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 142 YcmkTELLFMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTI-ILNENLWE-------NYFVMYSILSMNVIL 213
Cdd:COG0651   270 F---LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAgalfhllNHALAKALLFLAAGA 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1896070057 214 MFKKMNSYFINQMYSTLNMNTLNKIMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRI 292
Cdd:COG0651   347 IERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-292 5.76e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 72.58  E-value: 5.76e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  16 MGTLLSISTTSWLGVWVGLEMNLLSFIPL---------LSNSKEMTENEASIKYFMIQAMASTMLLFSILIL-------- 78
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFGCALYfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  79 ---------LMKNSIFKENTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYCMKTELL 149
Cdd:MTH00198  279 mlgtilsatLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 150 FMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMM-----STIILNENLWeNYFVMY---SILSMNVILMF------ 215
Cdd:MTH00198  359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILigvsaGTYESLQASW-TYAVTYlvsALASFTVICTLeefgtr 437

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 216 ------KKMNSYFINQMYSTLNMNTLNK------IMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTI------ 277
Cdd:MTH00198  438 tptsrqRDGSFGNYNLVRRLVDLTILSRgqpyiaFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIyylval 517

                         330
                  ....*....|....*.
gi 1896070057 278 -MVIMTTMTLYYYMRI 292
Cdd:MTH00198  518 fAIICTCISAFYYIRI 533
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 149-298 3.09e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 54.98  E-value: 3.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 149 LFMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMY--------SILSMNVILMFKKMNS 220
Cdd:PRK12667  297 ILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHiinhaiakSLLFLASGVFIHAAGT 376

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1896070057 221 YFINQMYSTLNMNTLNKIMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLL 298
Cdd:PRK12667  377 RDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFF 454
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-292 1.97e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 52.19  E-value: 1.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   8 LLFLSTTMMGTLLsisTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILLMK------ 81
Cdd:PRK08375  112 FLLLLAGLLGALL---TADLFNLFVFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVtgtlnm 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  82 ---NSIFKENTIISSMM--ISSSLLMKMGAAPLHFWFPEVMKSSS--------------WNNCMILMTWQKITPMMMLSY 142
Cdd:PRK08375  189 adlAGALAENPTVVTAFgfVLLALALKAAVFPLHTWLPRAYPAAPpvvtallsglvtkvAVYALIRIYFTVFGGDFRFAL 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 143 CMKTelLFMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMstiilnenlwenyfVMYSILSMNVIL--------- 213
Cdd:PRK08375  269 GLGW--LLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYIL--------------LGLALLTPLALAagllhllhh 332

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 214 MFKK----MNSYFINQMYSTLNMNTLNKIMMMIPL---------LSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVI 280
Cdd:PRK08375  333 ALMKgalfLAAGAIEVTYGTRRLSELSGLGRRMPLtaaafavasLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLA 412

                         330
                  ....*....|..
gi 1896070057 281 MTTMTLYYYMRI 292
Cdd:PRK08375  413 SSLLALLYFLRI 424
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-298 4.93e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 51.25  E-value: 4.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  55 EASIKYFMIQAMASTMLLFSILILL---------MKNSIFKENTIISSMMISSSLL----MKMGAAPLHFWFPEV--MKS 119
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLYgqygtlnmaYLAVKMSENPTVVAKIALALFIaglaMKSGAVPVHMWLPDAypAAP 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 120 SSWNNCMILMTWQKITPMMMLSYCMKTELLFMMTT--------LLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMM---- 187
Cdd:PRK08376  252 SSISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiilgCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglg 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 188 -STIILNENLWE---------------NYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMMMIPLLSIGGMP 251
Cdd:PRK08376  332 vGLAALGDPAMAsygeialaggiyhivNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLP 411

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1896070057 252 PLTGFLPKWitiqyLIENNMSMFMTIM----VIMTTMTLYYYMRITFSTLL 298
Cdd:PRK08376  412 PFNGFASKW-----LIYESSALFNPILgviaMIGSVLTLASFVKVFHTAFF 457
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
148-306 1.19e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 50.05  E-value: 1.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 148 LLFMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENlwENY----FVMYSILSMN------VILMFKK 217
Cdd:PRK02504  277 LLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTE--AGYasmvFYLLAYLFMNlgafacVILFSLR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 218 MNSYFINQmYSTL-NMNTLNKIMMMIPLLSIGGMPPLTGFLPK-------WITIQYLIennmsmfMTIMVIMTTMTLYYY 289
Cdd:PRK02504  355 TGTDQISD-YAGLyQKDPLLTLGLSLCLLSLGGIPPLAGFFGKiylfwagWQAGLYLL-------VLVGLVTSVISIYYY 426

                         170       180
                  ....*....|....*....|....*..
gi 1896070057 290 MRIT----------FSTLLMKYPENSW 306
Cdd:PRK02504  427 IRVIkmmvvkepqeMSDVVKNYPEINW 453
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
55-311 3.55e-06

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 48.49  E-value: 3.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  55 EASIKYFMIQAMASTMLLFSILILL----------MKNSIFKENTIISSMMISSSLLMKM----GAAPLHFWFPEVMKSS 120
Cdd:PRK06277  150 KAALKYMILGNVAGSILLLGIGFLLastgtlnitdIHNALLVNPTSPVIYGGLLLLIFGLlygsGLPPFHTIKSDIYAKA 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 121 SWNNCMILMTWQKITPMMM----------LSYCMKTELLFMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTI 190
Cdd:PRK06277  230 KPFGSALLQTFSKFVLVALmlvifklfggLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 191 ILNENL--------WENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMMMIPLLSIGGMPPLTGFLPKWIT 262
Cdd:PRK06277  310 ALGTPLgivagifhAINHVIYKSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLML 389

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1896070057 263 IQYLIENNMSMFMTIMVIMTTMTLYYYMRITFSTLLMKYPENSWMWNKK 311
Cdd:PRK06277  390 AQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYLKPKPEELEYKNKK 438
ndhB CHL00049
NADH dehydrogenase subunit 2
 8-338 1.07e-05

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 46.92  E-value: 1.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   8 LLFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLS-NSKEMTENEASIKYFMIQAMASTMLLFSILIL-------- 78
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGyTKKDVRSNEATMKYLLMGGASSSILVYGFSWLyglsggei 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  79 ----LMKNSIFKENTIISSMMISSSLLM-----KMGAAPLHFWFPEVMKSSSWNNCMILMTWQKITPMMMLSYCMKT--- 146
Cdd:CHL00049  194 elqeIVNGLINTQMYNSPGISIALIFITvgigfKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIpfy 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 147 ------ELLFMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIIL-NENLWENYFVMYSI--LSMN------V 211
Cdd:CHL00049  274 fssnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVgDSNDGYASMITYMLfyIFMNlgtfacI 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 212 ILMFKKMNSYFInQMYSTLNM-NTLNKIMMMIPLLSIGGMPPLTGFLPK-------WITIQYLIennmsmfMTIMVIMTT 283
Cdd:CHL00049  354 VLFGLRTGTDNI-RDYAGLYTkDPFLALSLALCLLSLGGIPPLAGFFGKlylfwcgWQAGLYFL-------VSIGLLTSV 425

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1896070057 284 MTLYYYMRI------TFSTLLMKYPENSWMWNKKKNLNILITMM--TIISS-AGMMMSPTMTIM 338
Cdd:CHL00049  426 ISIYYYLKIikllmtGRNQEITPYVRNYRRSPLRSNNSIELSMIvcVIASTiPGISMNPIIAIA 489
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-305 1.52e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 46.35  E-value: 1.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   1 INNNMSNLLFLSTTMMGTLLSISTTSWLGVWVGLEMNLLSFIPLLSNSKEMTENEASIKYFMIQAMASTMLLFSILILL- 79
Cdd:PRK06589  112 IDSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIy 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  80 --------MKNSIFKENTIISSMMISSSLLMKMGAAPLHFWFPEVMKSSSWNNCMI---------LMTWQKITpMMMLSY 142
Cdd:PRK06589  192 tktgnldfVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktgLFCIYKIL-LYIFGL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 143 CMKTELLFMMTTL-----LSIMFGMIGGLNQTNLRQLMAYSSISHMGW-MMSTIILNENLWENYFVMYSILSMNVILMFK 216
Cdd:PRK06589  271 SYLQRIFAEFNWLifipiVSIFYSSLKALKTDNIKKILAYSTISQLSLaLLSAFILTPKALGAAILHLVSHSFAKICLFY 350

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 217 KMNSYF-------INQMYSTLNMNTLNKIMMMIPLLSIGGMPPLTGFLPKWITIQYLIENN---MSMFMTIMVIMTTMTL 286
Cdd:PRK06589  351 SMGSIYslkkedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNqpwLSIIVMLVVIASSILS 430

                         330       340
                  ....*....|....*....|
gi 1896070057 287 -YYYMRITFSTLLMKYPENS 305
Cdd:PRK06589  431 aLYLLKILSSIYKPSLSENS 450
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
156-294 3.79e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 3.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 156 LSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVILM-------FKKMNSYF-INQMY 227
Cdd:PRK12663  281 ITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTAlfliagsLVRLTGYRsLQYLG 360

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896070057 228 STLNMNTLNKIMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRITF 294
Cdd:PRK12663  361 GLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFF 427
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 3-303 7.28e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.14  E-value: 7.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057   3 NNMSNLLFLSTTMMGTLLSISTTSWLGVWVGLE-MNLLSFIPLLSNSKEmtENEASIKYFMIQAMASTMLLFSILILLMK 81
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEiMTFSSFMMVPMGKKE--SRKASLKYFVLSAIGAYAMLYAIFLIYAK 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057  82 NSIFK--------------ENTIISSMMISSSLLMKMGAAPLHFWFPEVMksSSWNNCMILMTWQKITPM------MMLS 141
Cdd:PRK08668  174 TGTFDfadisqglindtstGFALIVFLFLLAFGVAKAGIFPLHVWAPDAY--SEAPQSFSAVLSGQLSKLgaygflLVLY 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 142 YCMKTELLFMMTTL---------------LSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWE-------- 198
Cdd:PRK08668  252 VLPGTKLFSEFGTYrgvplfnyilawlgnISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvf 331

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 199 NYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIM 278
Cdd:PRK08668  332 NHALFKGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411

                         330       340
                  ....*....|....*....|....*
gi 1896070057 279 VIMTTMTLYYYMRITFSTLLMKYPE 303
Cdd:PRK08668  412 FFGSIGSFLYVFRPLAGVFLGQLPS 436
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 150-292 1.40e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.49  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 150 FMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYsILSMNVILMFKKMNSYFINQMYST 229
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAY-IVNHSIVKSALFMVSGSISYHFGT 360

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1896070057 230 LNMNTLNKIMMMIP---------LLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRI 292
Cdd:PRK12662  361 TKLEDCLNLWKSMPkitlafvllSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 146-292 1.91e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 39.93  E-value: 1.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 146 TELLFMMTTLLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNENLWENYFVMYSILSMNVilmfKKMNSYFINQ 225
Cdd:PRK07691  274 THYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIV----KAALFLLIGI 349

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1896070057 226 MYSTLNMNTLNKI------------MMMIPLLSIGGMPPLTGFLPKWITIQYLIENNMSMFMTIMVIMTTMTLYYYMRI 292
Cdd:PRK07691  350 MIKITGTTDLKKMgglikrypvlgwMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 103-256 3.58e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 39.15  E-value: 3.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 103 KMGAAPLHFWFPEVMKSSSWNNCMILM-TWQKITPMMMLSYCMKT--------ELLFMMTTLLSIMFGMIGGLNQTNLRQ 173
Cdd:TIGR01972 216 KVPLFPLHTWLPDAHVEAPTAGSVILAgVLLKMGTYGFLRFNLPLfpdaslyfAPVLAALGVIAIIYGALIALAQTDIKR 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 174 LMAYSSISHMGWMMSTIILNENLWENYFVMYSI--------LSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMMMIPLL 245
Cdd:TIGR01972 296 LIAYSSISHMGFVLLGIFSFNELGISGAVFQMIshglitaaLFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAM 375

                         170
                  ....*....|.
gi 1896070057 246 SIGGMPPLTGF 256
Cdd:TIGR01972 376 ASLGLPGTSGF 386
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 155-187 3.77e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 38.91  E-value: 3.77e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1896070057 155 LLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMM 187
Cdd:COG1008   283 VIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL 315
PRK12650 PRK12650
DUF4040 family protein;
151-190 5.14e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.87  E-value: 5.14e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1896070057 151 MMTTLLSIMFGMigglNQTNLRQLMAYSSISHMGWMMSTI 190
Cdd:PRK12650  280 MITALMGAVFAV----QKTDLKKLTAYSTVSQLGWIVATI 315
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 155-294 5.41e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.36  E-value: 5.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 155 LLSIMFGMIGGLNQTNLRQLMAYSSISHMGWMMSTIILNE--NLWENYFVMY------SILSMNVILMFKKMNSYFINQM 226
Cdd:MTH00226  304 IVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDiiGLTGSIFIMLahgivsSLLFILVTILYDRHHTRLIKYY 383

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1896070057 227 YS-TLNMNTLNKIMMMIPLLSIgGMPPLTGFLPKWITIQYLIENN--MSMFMTIMVIMTTMTLYYYM-RITF 294
Cdd:MTH00226  384 RGlSITMPIWGTIMIVTSLANV-AVPPSGNFIGEYLSILSSFNWNpiIGVFVCSGVILSAVYSFYFAnRVTF 454
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 109-259 7.49e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 38.02  E-value: 7.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 109 LHFWFPEVMKSSSWNNCMILMTWQKITP--MMMLSYCM--KTELLFMMTTL---LSIMFGMIGGLNQTNLRQLMAYSSIS 181
Cdd:MTH00032  244 LHTWLPDAMEGPTPVSALIHAATMVTAGvfLMIRSFPLfeKAPLTLLIITIfgaLTAFFAATVGLVQNDLKKVIAYSTCS 323

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070057 182 HMGWMMSTIIL----NENLW----ENYFVMYSILSMNVILMFKKMNSYFINQMYSTLNMNTLNKIMMMIPLLSIGGMPPL 253
Cdd:MTH00032  324 QLGYMVLIIGIegshNVGLFhlvnHAFFKALLFLSAGSVIHSTTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYL 403


                  ....*.
gi 1896070057 254 TGFLPK 259
Cdd:MTH00032  404 TGFYSK 409
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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