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Conserved domains on  [gi|1896070069|gb|QNJ47190|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Dictyophorus spumans]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 9.79e-99

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 294.81  E-value: 9.79e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   1 MSSNLSKLMFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVILL 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  81 KLPMGWEkelTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYCMQNKFFIsMIVITSIMI 160
Cdd:MTH00160   81 NLMLFNN---ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFII-IIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 161 GALGGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKFNM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 241 FISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFILKSYENSWSMNIKLNKKKIIFP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1896070069 321 MAVMTSSLGLILTTSLISI 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 9.79e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 294.81  E-value: 9.79e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   1 MSSNLSKLMFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVILL 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  81 KLPMGWEkelTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYCMQNKFFIsMIVITSIMI 160
Cdd:MTH00160   81 NLMLFNN---ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFII-IIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 161 GALGGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKFNM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 241 FISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFILKSYENSWSMNIKLNKKKIIFP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1896070069 321 MAVMTSSLGLILTTSLISI 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 6.49e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 6.49e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  24 SNSWFGVWMGLEMNLLSFIPLM-MNEKNLMINESSIKYFIVQAMASTMLMFSILVI-----------LLKLPMGWEKELT 91
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  92 SSM---MINSSLLIKIGAAPFHMWFPEVMSASSWKNCLIL-MTWQKLAPIM-------MLSYCMQNKFFISMIVITSIMI 160
Cdd:pfam00361  81 LLLlflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGlirrsllYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 161 GALGGLNQTSLRQLMAYSSISHLSWMIGSMLI----SETMWELYFIIYSILSMTLIMMFN-----QTNSFFISQLFTTNP 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1896070069 232 QKTEMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 3.07e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.89  E-value: 3.07e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   8 LMFLSTLmmGTSISISSNSWFGVWMGLE-MNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMF------------S 74
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLElLSLSLYVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  75 ILVILLKLPMGWEKE---LTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMML---------SY 142
Cdd:COG1007   185 LAGIAAALAAGGANSpllLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 143 CMQNKFFISMIVITSIMIGALGGLNQTSLRQLMAYSSISH-----LSWMIGSMLISETMWeLYFIIYSIlsMTL-----I 212
Cdd:COG1007   265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHagyllLGLAAGTPLGVSAAL-FYLLAYLF--MNLgafavI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 213 MMFNQTNSFF-----ISQLFTTNPQkteMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLY 287
Cdd:COG1007   342 LLLSRKGGEAeeiedLAGLARRSPL---LALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418


                  ....*
gi 1896070069 288 YYLRI 292
Cdd:COG1007   419 YYLRV 423
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-330 4.63e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.70  E-value: 4.63e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   8 LMFLSTLmmGTSISISSNSWFGVWMGLEMNLLSFIPLM-MNEKNLMINESSIKYFIVQAMASTMLMFSILVI-------- 78
Cdd:TIGR01770 107 LLLFALL--GIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgsln 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  79 ---LLKLPMGWEKE----LTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLA---PIMMLSYCMQNKF 148
Cdd:TIGR01770 185 fedLLLFLSNGMLNisllLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 149 ------FISMIVITSIMIGALGGLNQTSLRQLMAYSSISHLSW-MIGSMLISETMWE---LYFIIYSILSM---TLIMMF 215
Cdd:TIGR01770 265 seawqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLgafGVLSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 216 NQTNSFFI------SQLFTTNPQkteMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYY 289
Cdd:TIGR01770 345 RSYKDEWIeyisdfAGLFKTNPI---LAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1896070069 290 LRISFSSFILKSYENSWSMNIKLNKKKIIFPMAVMTSSLGL 330
Cdd:TIGR01770 422 LRVVKVMYFDKPERRIPSNPQSKAQSLLLSISALFILFLGL 462
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 9.79e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 294.81  E-value: 9.79e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   1 MSSNLSKLMFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVILL 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  81 KLPMGWEkelTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYCMQNKFFIsMIVITSIMI 160
Cdd:MTH00160   81 NLMLFNN---ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFII-IIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 161 GALGGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKFNM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 241 FISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFILKSYENSWSMNIKLNKKKIIFP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1896070069 321 MAVMTSSLGLILTTSLISI 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-296 6.76e-66

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 211.24  E-value: 6.76e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   8 LMFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSIlVILLKLPMGW- 86
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAI-IINLMYSGQWt 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  87 ---EKELTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAP--IMMLSYCMQNKFFISMIVITSIMIG 161
Cdd:MTH00105   86 itkLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPlsILYQISPSINPNLLLTLAILSILIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 162 ALGGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKFNMF 241
Cdd:MTH00105  166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1896070069 242 ISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSS 296
Cdd:MTH00105  246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYST 300
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 5-340 8.53e-65

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 208.52  E-value: 8.53e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   5 LSKLMFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVILLKLPm 84
Cdd:MTH00112    4 HAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG- 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  85 GWE----KELTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYCMQ--NKFFISMIVITSI 158
Cdd:MTH00112   83 QWDitqlTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNslNPTLLLTLAILST 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 159 MIGALGGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKF 238
Cdd:MTH00112  163 LIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNT 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 239 NMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFILKSYENSWSMNI--KLNKKK 316
Cdd:MTH00112  243 TLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKwrTKPKKN 322

                         330       340
                  ....*....|....*....|....
gi 1896070069 317 IIFPMAVMTSSLGLILTTSLISIF 340
Cdd:MTH00112  323 TLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 9-340 6.22e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 188.21  E-value: 6.22e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   9 MFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVILLKLPMGWEK 88
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  89 ELT---SSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPiMMLSYCMQNKFFISMIVI---TSIMIGA 162
Cdd:MTH00070   88 NMQtplPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAP-MALLIQISHLLNSNLLIImglLSTLIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 163 LGGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKFNMFI 242
Cdd:MTH00070  167 WGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMML 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 243 SLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFILKSYENSWSMNIKLNKKKIIFPMA 322
Cdd:MTH00070  247 TLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLS 326

                         330       340
                  ....*....|....*....|
gi 1896070069 323 VMT--SSLGLILTTSLISIF 340
Cdd:MTH00070  327 LTIilSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-295 2.97e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 183.85  E-value: 2.97e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   9 MFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSIlVILLKLPMGWEK 88
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFAS-TTNAWLTGQWDI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  89 ELTS----SMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAP-IMMLSYCMQNKFFISMIVITSIMIGAL 163
Cdd:MTH00135   87 QQMShplpTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPfALILQIAPTNPTLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 164 GGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTT---NPQKTEMkfnM 240
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSwtkAPALTAL---T 243

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1896070069 241 FISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFS 295
Cdd:MTH00135  244 PLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYA 298
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-340 1.53e-54

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 182.05  E-value: 1.53e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   8 LMFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILV---ILLKLPM 84
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIqawLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  85 GWEKELTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYCMQ--NKFFISMIVITSIMIGA 162
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNllNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 163 LGGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKFNMFI 242
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 243 SLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFS---------SFILKSYENSWSMNIKLN 313
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNtsltlfpqhSISLFSWRNSGNITVYGV 326

                         330       340
                  ....*....|....*....|....*..
gi 1896070069 314 KKKIIFPMAVmtssLGLILTTSLISIF 340
Cdd:MTH00041  327 ILSILSSISI----LGLLLIPLFLSFL 349
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 2-337 1.05e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 179.31  E-value: 1.05e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   2 SSNLSKLMFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVILLK 81
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  82 LPMGWekeltSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYCMQNKFFISMIVITSIM-- 159
Cdd:MTH00144   81 SFSWF-----SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVLsa 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 160 -IGALGGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKF 238
Cdd:MTH00144  156 lVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 239 NMFIsLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFIlksyenSWSMNIKLNKKKII 318
Cdd:MTH00144  236 IISL-LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSKVL 308

                         330
                  ....*....|....*....
gi 1896070069 319 FPMAVMTSSLGLILTTSLI 337
Cdd:MTH00144  309 NSSIISLNLLGGLLFLLLY 327
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 8-340 8.20e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 177.47  E-value: 8.20e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   8 LMFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVILLKLPMGWE 87
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  88 KELTSSM---MINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLS--YCMQNKFFISMIVITSIMIGA 162
Cdd:MTH00200   87 SEMLGPLsetLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 163 LGGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKFNMFI 242
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 243 SLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFILKSYENSWSMNIKLNKKKIIFPMA 322
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326

                         330       340
                  ....*....|....*....|
gi 1896070069 323 VMT--SSLGLILTTSLISIF 340
Cdd:MTH00200  327 LLLllSILGLPLTPQLLFLF 346
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-313 4.84e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 169.47  E-value: 4.84e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   9 MFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVILLKLPMgwek 88
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL---- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  89 ELTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYCMQNKFFISMIVITSIMIGALGGLNQ 168
Cdd:MTH00197   78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 169 TSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKFNMFISLLSLG 248
Cdd:MTH00197  158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896070069 249 GLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFILKSYENSWSMNIKLN 313
Cdd:MTH00197  238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLL 302
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-328 3.97e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 164.95  E-value: 3.97e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   1 MSSNLSKLMFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVILL 80
Cdd:MTH00011    2 MSTFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  81 KLPMgweKELTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYC--MQNKFFISMIVITSI 158
Cdd:MTH00011   82 FPSL---LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 159 MIGALGGLNQTSLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMKF 238
Cdd:MTH00011  159 LAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSM 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 239 NMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFILKSYENSWSMNIKLNKKKII 318
Cdd:MTH00011  239 SLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKIL 318

                         330
                  ....*....|
gi 1896070069 319 FPMAVMTSSL 328
Cdd:MTH00011  319 ISMCTLSLGL 328
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 6.49e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 107.40  E-value: 6.49e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  24 SNSWFGVWMGLEMNLLSFIPLM-MNEKNLMINESSIKYFIVQAMASTMLMFSILVI-----------LLKLPMGWEKELT 91
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  92 SSM---MINSSLLIKIGAAPFHMWFPEVMSASSWKNCLIL-MTWQKLAPIM-------MLSYCMQNKFFISMIVITSIMI 160
Cdd:pfam00361  81 LLLlflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGlirrsllYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 161 GALGGLNQTSLRQLMAYSSISHLSWMIGSMLI----SETMWELYFIIYSILSMTLIMMFN-----QTNSFFISQLFTTNP 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1896070069 232 QKTEMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-292 2.89e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 102.98  E-value: 2.89e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   8 LMFLSTLmmGTSISISSNSWFGVWMGLE-MNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMF------------S 74
Cdd:PRK05777  108 LVLFALL--GMMVMVSANDLLTLFLGLElLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygatgslS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  75 ILVILLKLPMGWEKE---LTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMML---------SY 142
Cdd:PRK05777  186 FAGIAKALADGSGNSlllLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvafgGL 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 143 CMQNKFFISMIVITSIMIGALGGLNQTSLRQLMAYSSISHLSWM-----IGSMLISETMWeLYFIIYSILSM---TLIMM 214
Cdd:PRK05777  266 SEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglaAGTAEGYSAVL-FYLLAYLFMTLgafGVISL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 215 -----FNQTNSFFISQLFTTNPQkteMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYY 289
Cdd:PRK05777  345 lrrkgGEAESISDFAGLSKRSPL---LAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYY 421


                  ...
gi 1896070069 290 LRI 292
Cdd:PRK05777  422 LRV 424
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 3.07e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 102.89  E-value: 3.07e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   8 LMFLSTLmmGTSISISSNSWFGVWMGLE-MNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMF------------S 74
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLElLSLSLYVLVAFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  75 ILVILLKLPMGWEKE---LTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMML---------SY 142
Cdd:COG1007   185 LAGIAAALAAGGANSpllLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveafpGL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 143 CMQNKFFISMIVITSIMIGALGGLNQTSLRQLMAYSSISH-----LSWMIGSMLISETMWeLYFIIYSIlsMTL-----I 212
Cdd:COG1007   265 AADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHagyllLGLAAGTPLGVSAAL-FYLLAYLF--MNLgafavI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 213 MMFNQTNSFF-----ISQLFTTNPQkteMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLY 287
Cdd:COG1007   342 LLLSRKGGEAeeiedLAGLARRSPL---LALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAY 418


                  ....*
gi 1896070069 288 YYLRI 292
Cdd:COG1007   419 YYLRV 423
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-292 5.45e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.88  E-value: 5.45e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  16 MGTSISISSNSWFGVWMGLEMNLLS-FIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSI----------------LVI 78
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSlFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsyinLVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  79 LLKLPMGWEKELTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYCMQNKFFISMIVITSI 158
Cdd:MTH00196   84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 159 MIGALGGLNQTSLRQLMAYSSISHLSWMIGSMLI-------SETMWELYFIIYSILSMTLIMMFNQTNSFFI--SQLFTT 229
Cdd:MTH00196  164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfesiqASLVYLFIYIIMSICVFSIILALNVYKNLIIefSGLSRR 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1896070069 230 NPQkteMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRI 292
Cdd:MTH00196  244 LPI---LAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 16-292 1.16e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 92.39  E-value: 1.16e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  16 MGTSISISSNSWFGVWMGLEMNLLS-FIPLMMNEKNLMINESSIKYFIVQAMASTMLMF------------SILVILLKL 82
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFgcallygltgetSIQGINSIL 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  83 PMGWEKELtssmmINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKlapIMMLSYCMQNKFFISMIVIT---SIM 159
Cdd:MTH00199  188 TGDVGKIL-----ITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPK---IGVFSILVQIGPVTNVVLICavlSII 259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 160 IGALGGLNQTSLRQLMAYSSISHLSWMIGSMLI----SETMWELYFIIY---SILSMTLIMMFNQTNSFFI--SQLFTTN 230
Cdd:MTH00199  260 YGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIgsfeSIQASLIYMIIYvimSICSFSIILSLKLTKGLIVevSGLSRKN 339

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1896070069 231 PQkteMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRI 292
Cdd:MTH00199  340 PV---IALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-330 4.63e-19

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 87.70  E-value: 4.63e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   8 LMFLSTLmmGTSISISSNSWFGVWMGLEMNLLSFIPLM-MNEKNLMINESSIKYFIVQAMASTMLMFSILVI-------- 78
Cdd:TIGR01770 107 LLLFALL--GIFLLVSSNDLLSIYLGLELQSLCFYVLAgLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIygftgsln 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  79 ---LLKLPMGWEKE----LTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLA---PIMMLSYCMQNKF 148
Cdd:TIGR01770 185 fedLLLFLSNGMLNisllLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 149 ------FISMIVITSIMIGALGGLNQTSLRQLMAYSSISHLSW-MIGSMLISETMWE---LYFIIYSILSM---TLIMMF 215
Cdd:TIGR01770 265 seawqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLgafGVLSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 216 NQTNSFFI------SQLFTTNPQkteMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYY 289
Cdd:TIGR01770 345 RSYKDEWIeyisdfAGLFKTNPI---LAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYY 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1896070069 290 LRISFSSFILKSYENSWSMNIKLNKKKIIFPMAVMTSSLGL 330
Cdd:TIGR01770 422 LRVVKVMYFDKPERRIPSNPQSKAQSLLLSISALFILFLGL 462
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-292 2.12e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.21  E-value: 2.12e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  16 MGTSISISSNSWFGVWMGLEMNLLSFIPL---------MMNEKNLMINESSIKYFIVQAMASTMLMF------------- 73
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFgcalyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  74 SILVILLKLPMGWEKELTSS----MMINSSLLIKIGAAPFHMWFPEVMS-ASSWKNCLILMTWQKLAPIMMLSYCMQNKF 148
Cdd:MTH00198  279 MLGTILSATLETTNIELRQGslgyLFITVAILFKLAAAPFHMWTPDVYEgAPTPTTALIAIIPKFTVYILLTSLVITSKL 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 149 FISMIVItSIMIGALGGLNQTSLRQLMAYSSISHLSWMIGSM-------LISETMWELYFIIYSILSMTLIMMFNQTNSF 221
Cdd:MTH00198  359 LLSVAII-SLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGTR 437

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 222 FISQ------------------LFTTNPQKTEMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTM-- 281
Cdd:MTH00198  438 TPTSrqrdgsfgnynlvrrlvdLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVal 517

                         330
                  ....*....|....*.
gi 1896070069 282 -----TTINLYYYLRI 292
Cdd:MTH00198  518 faiicTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-292 3.16e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 67.09  E-value: 3.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   9 MFLSTLMMGTSISISSNSWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVI---------- 78
Cdd:COG0651   111 PLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLygatgtlnma 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  79 -----LLKLPMGWEkeLTSSMMINSSLLIKIGAAPFHMWFPEVMS-ASSWKNCLI--LMTwqKLAP--IMMLSYCM---Q 145
Cdd:COG0651   191 dlaarLAELDPGLL--LAAFALLLVGFGIKAALFPLHFWLPDAYPaAPSPVSALLsgLLT--KVGVyaILRVLTLLfgaD 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 146 NKFFISMIVIT----SIMIGALGGLNQTSLRQLMAYSSISHLSWM-IGSMLISETMWE--LYFIIYSILSMTLI-----M 213
Cdd:COG0651   267 PALFLGTLLLVlgllTMLVGALGALAQRDLKRLLAYSSVSQIGYIlLGLGLGTPLGLAgaLFHLLNHALAKALLflaagA 346

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 214 MFNQTNSFFISQ---LFTTNPQkteMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYL 290
Cdd:COG0651   347 IERATGTRDLDKlggLGKRMPL---TAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFV 423


                  ..
gi 1896070069 291 RI 292
Cdd:COG0651   424 RI 425
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
54-292 1.04e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 62.38  E-value: 1.04e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  54 NESSIKYFIVQAMASTMLMFSilVILLKLPMGWEKELT---SSMMINSSLLI-------------KIGAAPFHMWFPEVM 117
Cdd:PRK02504  160 NEAALKYLLIGAASSAIFLYG--SSLLYGLSGGSTQLSaiaLALITSPSLGLalalvfviagiafKISAVPFHQWTPDVY 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 118 SASSWKNCLILMTWQKLA----PIMMLSYCM-----QNKFFISMIVITSIMIGALGGLNQTSLRQLMAYSSISHLSW-MI 187
Cdd:PRK02504  238 EGSPTPVVAFLSVGSKAAgfalAIRLLVTAFpsfdeQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvMI 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 188 GSMLISETMWE---LYFIIYsiLSMTL-----IMMFN-QTNSFFISQ---LFTTNPQKTemkFNMFISLLSLGGLPPFLG 255
Cdd:PRK02504  318 GLVAGTEAGYAsmvFYLLAY--LFMNLgafacVILFSlRTGTDQISDyagLYQKDPLLT---LGLSLCLLSLGGIPPLAG 392

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1896070069 256 FLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRI 292
Cdd:PRK02504  393 FFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-325 1.30e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 56.26  E-value: 1.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  55 ESSIKYFIVQAMASTMLMFSILVILLK---LPMGW-EKELTSSMMINS---------SLLIKIGAAPFHMWFPEVMSA-- 119
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLYGQygtLNMAYlAVKMSENPTVVAkialalfiaGLAMKSGAVPVHMWLPDAYPAap 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 120 SSWKNCLILMTWQKLAPIMMLSYCMQ----NKFFISMIVIT----SIMIGALGGLNQTSLRQLMAYSSISHLSWMI---- 187
Cdd:PRK08376  252 SSISAMLLVIKQAGLYALARVLFSIYgpaiNLATVGWVIIIlgclTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglg 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 188 ------GSMLISET-----MWELYFIIYSILSMTLIMMfnqTNSFFISQLFTTNPQKT-----EMKFNMF---ISLLSLG 248
Cdd:PRK08376  332 vglaalGDPAMASYgeialAGGIYHIVNHALYKALLFL---TAGAVIYETGTRNLNELgglarTMPKTTIaflIGAAAIV 408

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1896070069 249 GLPPFLGFLPKWMIIQSM-IENSMTTMITIMSTMTTinLYYYLRISFSSFILKSYENswSMNIKLNKKKIIFPMAVMT 325
Cdd:PRK08376  409 GLPPFNGFASKWLIYESSaLFNPILGVIAMIGSVLT--LASFVKVFHTAFFGPPSEK--VMNVKEPPKPMLVPMLILA 482
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 99-292 1.62e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.66  E-value: 1.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  99 SLLIKIGAAPFHMWFPEVMS-ASSWKNCLILMTWQKlAPIMMLSYCMQNKFFISM------------IVITSIMIGALGG 165
Cdd:PRK08375  211 ALALKAAVFPLHTWLPRAYPaAPPVVTALLSGLVTK-VAVYALIRIYFTVFGGDFrfalglgwllavLALLSMLVGSLAA 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 166 LNQTSLRQLMAYSSISHLSWMI-GSMLISETMwelyfiiysiLSMTLIMMFNqtNSFFISQLF--------TTNPQKTE- 235
Cdd:PRK08375  290 LGQDDVKRVLAYSTVSQMGYILlGLALLTPLA----------LAAGLLHLLH--HALMKGALFlaagaievTYGTRRLSe 357

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896070069 236 -------MKFNM---FISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRI 292
Cdd:PRK08375  358 lsglgrrMPLTAaafAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
148-297 8.45e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 50.33  E-value: 8.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 148 FFISMIVITSIMIGALGGLNQTSLRQLMAYSSISHLSWMI---GSMLISETMWELYFIIYSILSMTLI-----MMFNQTN 219
Cdd:PRK12663  273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILlglALGTPAGINGAIFYLVHDMVVKTALfliagSLVRLTG 352

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1896070069 220 SFFISQLFTTNPQKTEMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSF 297
Cdd:PRK12663  353 YRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLAY 430
ndhB CHL00049
NADH dehydrogenase subunit 2
 103-292 3.57e-06

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 48.46  E-value: 3.57e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 103 KIGAAPFHMWFPEV-----------MSASSWKNCLILMTwqKLAPIMMLSYCMQNKFFISMIVITSIMIGALGGLNQTSL 171
Cdd:CHL00049  227 KLSLAPFHQWTPDVyegsptpvvafLSVTSKVAASALAT--RIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSM 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 172 RQLMAYSSISHlswmIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFFISQLFTTNPQKTEMK-------------F 238
Cdd:CHL00049  305 KRMLAYSSIGQ----IGYVIIGIIVGDSNDGYASMITYMLFYIFMNLGTFACIVLFGLRTGTDNIRdyaglytkdpflaL 380

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1896070069 239 NMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRI 292
Cdd:CHL00049  381 SLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK12650 PRK12650
DUF4040 family protein;
108-298 3.70e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 48.89  E-value: 3.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 108 PFHMWFPEVMSASSWKNCLILMTWQKLAPIMML---SYCMQ-----NKFFISMIVITSIMiGALGGLNQTSLRQLMAYSS 179
Cdd:PRK12650  226 PFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLlrfSPVFHdvavwNWLLIIVGMITALM-GAVFAVQKTDLKKLTAYST 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 180 ISHLSW---MIG-------SMLISETMWELYFiiYSILSMTLIMMFNQTNSFFISQLfttNPQKTEMKFN---MFISLLS 246
Cdd:PRK12650  305 VSQLGWivaTIGvgtpfalTAAVVHTLAHALF--KSSLFMLIGVVDHQAGTRDIRRL---GSLWRRMPFTfvsVTIAALS 379

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1896070069 247 LGGLPPFLGFLPKWMIIQSMIE----NSMTTMITIMSTMTTINLYYY-LRISFSSFI 298
Cdd:PRK12650  380 MAAVPPLFGFVSKEGMLTAFLEapggNAGVVLLLVGAALGAVFTFAYsARLVLGAFV 436
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 157-332 6.66e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 47.66  E-value: 6.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 157 SIMIGALGGLNQTSLRQLMAYSSISHLSWM-----IGSMLISETMweLYFII-----YSILSMTLIMMFNQTNSFFISQL 226
Cdd:PRK12667  305 SAIIGALMMVVQKDVKRLLAYSTISHMGYIfmgigIGTQLGLAAA--LFHIInhaiaKSLLFLASGVFIHAAGTRDIDEL 382

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 227 FTTNPQKTEMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFILKSYE--- 303
Cdd:PRK12667  383 AGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSgee 462

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1896070069 304 ----NSWSMNIklnkkkIIFPMAVMTSSLGLIL 332
Cdd:PRK12667  463 vehkESPSMSV------VILVLALAVLILGILA 489
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-271 6.78e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.60  E-value: 6.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069   1 MSSNLSKLMFLSTLMMGTSISISSNSWFGVWMGLEMNLLS--FIPLMMNEKNlmiNESSIKYFIVQAMASTMLMFSILVI 78
Cdd:PRK08668   94 TKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfMMVPMGKKES---RKASLKYFVLSAIGAYAMLYAIFLI 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  79 LLKLPMGWEKELTSSMMINSSL--------------LIKIGAAPFHMWFPEVMSASSWKNCLILM-TWQKLAP---IMML 140
Cdd:PRK08668  171 YAKTGTFDFADISQGLINDTSTgfalivflfllafgVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgQLSKLGAygfLLVL 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 141 SYCMQNKFFISMIVIT---------------SIMIGALGGLNQTSLRQLMAYSSISHLSW-MIGSMLISETMWE--LYFI 202
Cdd:PRK08668  251 YVLPGTKLFSEFGTYRgvplfnyilawlgniSIIVGTLMAILQEDIKKLIAYSSVANGGYiLVGLGLGTSLGFAggLFHV 330

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896070069 203 IYSILSMTLIMMFNQTnsfFISQLFTTN-------PQKTEMKFNM-FISLLSLGGLPPFLGFLPKWMIIQSMIENSM 271
Cdd:PRK08668  331 FNHALFKGLFFLIFAA---VIYRTGTTKisemgglIEKMPFTFAMyLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 100-297 3.44e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.45  E-value: 3.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 100 LLIKIGAA------PFHMWFPEVM------SAsswkncLI-----------LMTwqKLAPIMMLSYCMQNkfFISMIVIT 156
Cdd:COG1009   215 LLLLLGAFgksaqfPLHFWLPDAMegptpvSA------LLhaatmvkagvyLLA--RLSPLFALSPVWLT--VVAIIGAI 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 157 SIMIGALGGLNQTSLRQLMAYSSISHLSWMIgsMLISETMWELyfiiysilSMTLIMmfnqTNSFFISQLF--------T 228
Cdd:COG1009   285 TALFAALIALAQTDIKRVLAYSTVSQLGYMF--LALGVGAYVA--------ALFHLL----THAFFKALLFlgagsvihA 350

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 229 TNPQ--------KTEMKFN---MFISLLSLGGLPPFLGFLPKWMIIQSMIENS-----MTTMITIMSTMTTInlyYYLRI 292
Cdd:COG1009   351 TGTRdirkmgglRKKMPITaitFLIGALSLAGIPPFAGFFSKEAILEAALEAGglgplLLAVALLGAFLTAF---YSFRL 427


                  ....*
gi 1896070069 293 SFSSF 297
Cdd:COG1009   428 FFLVF 432
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 100-263 3.78e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.25  E-value: 3.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 100 LLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYCMQNKFFISMIV----ITSIMIGALGGLNQTSLRQLM 175
Cdd:PRK07234  194 LLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVrifgVGTALLGVLFALLEKDLKRML 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 176 AYSSISHLSWMIGSMLISEtmweLYFIIYSILSMTLIMMFNQTNSFFISQLfttnpQKTEMKFNMFISL----LSLGGLP 251
Cdd:PRK07234  274 AFSTISQLGFILAAPLVGG----LYALAHGLVKSTLFLCAGALPSRNFTEL-----ISQMLGIGKWIPLtmasFSIAGFP 344

                         170
                  ....*....|..
gi 1896070069 252 PFLGFLPKWMII 263
Cdd:PRK07234  345 LLAGFVSKVLTL 356
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 100-259 1.40e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.67  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 100 LLIKIGA------APFHMWFPEVM-----------SASSWKNCLILMTwqKLAPIMMLSYcmqnKFFISMIVI--TSIMI 160
Cdd:PRK12647  199 LLVLGGAftksaqFPFHFWLPNAMeaptpvsaylhSATMVKAGIYLLA--RLNPVLGGTP----LWQTILPLFggLTMLT 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 161 GALGGLNQTSLRQLMAYSSISHLSWMIgsMLI---SETMWE---LYFIIYSILSMTLIMMF----NQTNSFFISQLFTTN 230
Cdd:PRK12647  273 GALLAVRQTDLKLILAYSTVSALGTLV--MLLglgSELAIKaavLFLVAHSLYKGALFMVAgiidHETGTRDITKLGGLR 350

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1896070069 231 pqkTEMKFNMFISL---LSLGGLPPFLGFLPK 259
Cdd:PRK12647  351 ---RAMPITAAAALlaaLSMAGLPPLFGFLAK 379
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 157-325 1.46e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 40.32  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 157 SIMIGALGGLNQTSLRQLMAYSSISHLSWM---IGSMLISETMWELYFIIYSILSMTLIMMF--------NQTNSFFISQ 225
Cdd:PRK07691  285 TIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlvgVAMMTESGMIGAIYYLIHDMIVKAALFLLigimikitGTTDLKKMGG 364

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 226 LFTTNPQKTEMkfnMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFIlkSYENS 305
Cdd:PRK07691  365 LIKRYPVLGWM---FFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFW--GEPKG 439

                         170       180
                  ....*....|....*....|
gi 1896070069 306 WSMNIKLNKKKIIFPMAVMT 325
Cdd:PRK07691  440 YDLNNKVPVKKLLLPAVVLV 459
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-305 1.48e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 40.18  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  10 FLSTLMMGTSISISSNsWFGVWMGLEMNLLSFIPLMMNEKNLMINESSIKYFIVQAMASTMLMFSILVILLKLPMGWEKE 89
Cdd:PRK06589  122 FNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTKTGNLDFV 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  90 LTSSMMINSSL---------LIKIGAAPFHMWFPEVMSASSWKNCL-----------------ILMTWQklapIMMLSYC 143
Cdd:PRK06589  201 SGGLFSKNQSIilllmfiygIAKTAIFPVHSWLPAAMVAHYPVSALlhavivvktglfciykiLLYIFG----LSYLQRI 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 144 MQNKFFISMIVITSIMIGALGGLNQTSLRQLMAYSSISHLSWMIGSMLI----SETMWELYFIIYSILSMTLIM----MF 215
Cdd:PRK06589  277 FAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIltpkALGAAILHLVSHSFAKICLFYsmgsIY 356

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 216 NQTNSFFISQLFTTNPQKTEMKFNMFISLLSLGGLPPFLGFLPKWMIIQSMIENSMTTMITIMSTM----TTINLYYYLR 291
Cdd:PRK06589  357 SLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasSILSALYLLK 436

                         330
                  ....*....|....
gi 1896070069 292 ISFSSFILKSYENS 305
Cdd:PRK06589  437 ILSSIYKPSLSENS 450
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 90-310 1.52e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 39.85  E-value: 1.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  90 LTSSMMINSSLLIKIGAAPFHMWFPEVMSASSWKNCLILMTWQKLAPIMMLSYCMQNKFFisMIVITSIMIGALGGLNQT 169
Cdd:MTH00091   57 FSFGYFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFF--FLLLFGLLICFFQMFLLK 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069 170 SLRQLMAYSSISHLSWMIGSMLISETMWELYFIIYSILSMTLIMMFNQTNSFfisqlfttnpqktemKFNMFISLLSLGG 249
Cdd:MTH00091  135 SYKNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKL---------------NFVSWETLLVFMN 199

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896070069 250 LPPFLGFLPKWMIIQSMIENSMTTMITIMSTMTTINLYYYLRISFSSFILKSYENSWSMNI 310
Cdd:MTH00091  200 LPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGF 260
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 56-187 3.47e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 39.15  E-value: 3.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070069  56 SSIKYFIVQAMASTMLMFSILVI--------------LLKLPMGWEKELTSSMMInsSLLIKIGAAPFHMWFPEVMSASS 121
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLyflgggtfdllellNLPLPFGVQTWLFLAFFI--AFAVKVPLFPLHTWLPDAHVEAP 234

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896070069 122 WKNCLILM-TWQKLAPIMMLSYCMQ------NKFFISMIVITSIMI--GALGGLNQTSLRQLMAYSSISHLSWMI 187
Cdd:TIGR01972 235 TAGSVILAgVLLKMGTYGFLRFNLPlfpdasLYFAPVLAALGVIAIiyGALIALAQTDIKRLIAYSSISHMGFVL 309
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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