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Conserved domains on  [gi|1896070403|gb|QNJ47357|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Prosarthria teretrirostris]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
1-569 0e+00

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 581.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   1 IYYVFFFSLFISSLLMFFFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDE 80
Cdd:MTH00165    3 MCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  81 NFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYG 160
Cdd:MTH00165   83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 161 GWNYFYYCMFFDDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGY 240
Cdd:MTH00165  163 SWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 241 WFFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDF 320
Cdd:MTH00165  243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 321 QDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:MTH00165  323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 401 VYSFSSSISFIDSSKCISFGILGLLFVAVFGGSLISWLIFPLPSFIVLPFILSVLTFLSVLLGAYMGYFIFFIKGLVFNS 480
Cdd:MTH00165  403 DFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 481 FITLFN--YFFGLMWFMPFISSIYISLFPLNFGYHFNSAFDFGWNELFGGQGLYDVFLYFINYFYSCLDYNFKSYILLFS 558
Cdd:MTH00165  483 SLKNYKlsSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFL 562
                         570
                  ....*....|.
gi 1896070403 559 FWLFILFGFMF 569
Cdd:MTH00165  563 LWMIILLLLFL 573
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
1-569 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 581.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   1 IYYVFFFSLFISSLLMFFFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDE 80
Cdd:MTH00165    3 MCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  81 NFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYG 160
Cdd:MTH00165   83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 161 GWNYFYYCMFFDDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGY 240
Cdd:MTH00165  163 SWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 241 WFFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDF 320
Cdd:MTH00165  243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 321 QDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:MTH00165  323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 401 VYSFSSSISFIDSSKCISFGILGLLFVAVFGGSLISWLIFPLPSFIVLPFILSVLTFLSVLLGAYMGYFIFFIKGLVFNS 480
Cdd:MTH00165  403 DFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 481 FITLFN--YFFGLMWFMPFISSIYISLFPLNFGYHFNSAFDFGWNELFGGQGLYDVFLYFINYFYSCLDYNFKSYILLFS 558
Cdd:MTH00165  483 SLKNYKlsSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFL 562
                         570
                  ....*....|.
gi 1896070403 559 FWLFILFGFMF 569
Cdd:MTH00165  563 LWMIILLLLFL 573
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
28-494 1.58e-84

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 275.11  E-value: 1.58e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  28 LVFFLEWeiFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIIS 107
Cdd:COG1009    58 VVELYTW--IPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLL 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 108 ILLGWDGLGLISYCLVIYYHNVKSYN-AGMLTILSNRVGDVAILMSVVWMFNYGG-WNY---FYYCMFFDDSLEASFIIM 182
Cdd:COG1009   136 LFVFWELVGLCSYLLIGFWYEKPSARrAARKAFLVTRVGDLGLLLGILLLGAIAGtLNFselLAAAPTILSSPLLTLILL 215
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 183 MIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWF-FMLIVGCLTMFMSGLAANY 261
Cdd:COG1009   216 LLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALSPVWLtVVAIIGAITALFAALIALA 295
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 262 EFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDfQDVRYMGSIISVSPFTSVCFN 341
Cdd:COG1009   296 QTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATGT-RDIRKMGGLRKKMPITAITFL 374
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 342 VSSLSLCGMPFLAGFYSSDIILE-LVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVYSFSSSI-----SFIDSSK 415
Cdd:COG1009   375 IGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKhphesPWLMTLP 454
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 416 CISFGILGLLFVAVFGGSLISWL----IFPLPSFIVLPFILSVLTFLSVLLGAYMGYFIFFIKGL-----VFNSFITLFN 486
Cdd:COG1009   455 LVVLAVLSLVLGLLLPGLLEGLLapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLLYLKRPLpalaeRLKPLYRLLA 534

                  ....*...
gi 1896070403 487 YFFGLMWF 494
Cdd:COG1009   535 NKWYFDEL 542
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
34-481 5.83e-72

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 241.80  E-value: 5.83e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  34 WEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWD 113
Cdd:TIGR01974  65 FPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWE 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 114 GLGLISYCLV-IYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGwnYFYYCMFFDDSLEASFIIMMII-----LA 187
Cdd:TIGR01974 145 GVGLCSYLLIgFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYFG--TLNFQEVFALAPGAFFSALTLIclllfIG 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 188 GMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNM-LLDSGYWFFMLIVGCLTMFMSGLAANYEFDLK 266
Cdd:TIGR01974 223 AMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIK 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 267 SVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRYMGSIISVSPFTSVCFNVSSLS 346
Cdd:TIGR01974 303 RILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLA 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 347 LCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVYSFSSSISFIDSSKCISFGILGLLF 426
Cdd:TIGR01974 383 LIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAV 462
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896070403 427 VAVFGGSLISWLIFPLPSFIV-----------LPFILSVLTFLSVLLGAYMGYFIFFIKGLVFNSF 481
Cdd:TIGR01974 463 GSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPTAVAILGILLAYLLYLGNPTLPAKI 528
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
102-382 6.38e-44

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 157.86  E-value: 6.38e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 102 SPNIISILLGWDGLGLISYCLVIYYH-NVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFY----YCMFFDDSLE 176
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGkSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDelskALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 177 ASFIIMMIILAGMTKSAQIPFSSWLPAA-MAAPTPVSSLVhSSTLVTAGVYLLIRFSNMLLDSGYWF--FMLIVGCLTMF 253
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSSPFIqqILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 254 MSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPI---LSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRYMGSII 330
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1896070403 331 SVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFS 382
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
1-569 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 581.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   1 IYYVFFFSLFISSLLMFFFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDE 80
Cdd:MTH00165    3 MCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  81 NFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYG 160
Cdd:MTH00165   83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 161 GWNYFYYCMFFDDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGY 240
Cdd:MTH00165  163 SWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 241 WFFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDF 320
Cdd:MTH00165  243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 321 QDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:MTH00165  323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 401 VYSFSSSISFIDSSKCISFGILGLLFVAVFGGSLISWLIFPLPSFIVLPFILSVLTFLSVLLGAYMGYFIFFIKGLVFNS 480
Cdd:MTH00165  403 DFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLK 482
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 481 FITLFN--YFFGLMWFMPFISSIYISLFPLNFGYHFNSAFDFGWNELFGGQGLYDVFLYFINYFYSCLDYNFKSYILLFS 558
Cdd:MTH00165  483 SLKNYKlsSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFL 562
                         570
                  ....*....|.
gi 1896070403 559 FWLFILFGFMF 569
Cdd:MTH00165  563 LWMIILLLLFL 573
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
5-568 1.74e-152

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 449.29  E-value: 1.74e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   5 FFFSLFISSLLMFFFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFR 84
Cdd:MTH00151    7 SSFLLFSYSVFLFPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFLKR 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  85 FILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNY 164
Cdd:MTH00151   87 FMWLVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALVIYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVLLGHWSI 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 165 FYYCMFFDdsleASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNML-LDSGYWFF 243
Cdd:MTH00151  167 LSMWDFKL----SGWLGLLLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFFPFLsSSSGFSSF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 244 MLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDV 323
Cdd:MTH00151  243 LLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDI 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 324 RYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVYS 403
Cdd:MTH00151  323 RLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMK 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 404 FSSSISFIDSSKCISFGILGLLFVAVFGGSLISWLIFPLPSFIVLPFILSVLTFLSVLLGAYmgYFIFFIKGLVFNSFIT 483
Cdd:MTH00151  403 SSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLF--LSFGFWDSGFSSSKMV 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 484 LFNYFFGLMWFMPFISSIYISLFPLNFGYHFNSAFDFGWNELFGGQGLYDVFLYFINYFYSCLDYNFKSYILLFSFWLFI 563
Cdd:MTH00151  481 KLSFFFSSMWFLSPLSSQPLKSLSLKLSNSSMKSLDMGWLEILGGQGVFKANKSFSVLNESWPVKWFNFFIGLILLLVLF 560

                  ....*
gi 1896070403 564 LFGFM 568
Cdd:MTH00151  561 LVVIS 565
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
6-568 4.63e-149

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 440.62  E-value: 4.63e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   6 FFSLFISSLLMFFFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRF 85
Cdd:MTH00209    6 MFSLMLLFLFSFLMFVIFMWFQKIVILEWELLSLNSMSISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRF 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  86 ILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYF 165
Cdd:MTH00209   86 ILLVLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLVIYYQNSKSLSAGMLTALTNRVGDALLILSIAWMLMHGNWNIF 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 166 YYCMFFDdslEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSG-YWFFM 244
Cdd:MTH00209  166 YLNFNSN---LGSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSPfFSMSL 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 245 LIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVR 324
Cdd:MTH00209  243 LLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIR 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 325 YMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVYSF 404
Cdd:MTH00209  323 MVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNSS 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 405 SSSISFIDSSKCISFGILGLLFVAVFGGSLISWLIFPLPSFIVLPFILSVLTFLSVLLGAYMGYFIffIKGLVFNSFITL 484
Cdd:MTH00209  403 KSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMYMV--LKKNFFLIKGYK 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 485 FNYFFGLMWFMPFISSIYISLFPLNFGYHFNSAFDFGWNELFGGQGLYDVFLYFINYFYSCLDYNFKSYILLFSFWLFIL 564
Cdd:MTH00209  481 VNYFLSQMWFLPDLSSQPVNKFTMKLSKTMLKLLDQGWVEKMSGQGSFKVLKKSSKLSQIIQNNSLKLFVTFMMLILLGV 560

                  ....
gi 1896070403 565 FGFM 568
Cdd:MTH00209  561 ILFM 564
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
7-568 6.55e-148

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 437.66  E-value: 6.55e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   7 FSLFISSLLMFFFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFI 86
Cdd:MTH00207   12 YLLWFMSILMFPLSLYLMMCNKTILIEWEIFTISSSPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQEDKFLSRFI 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  87 LLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFY 166
Cdd:MTH00207   92 SLVLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILVIYYQNPKSLGAGMITALTNRIGDVMLLLSIGWTLNQGHWSITN 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 167 ycMFFDDslEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNmLLDSGYWF--FM 244
Cdd:MTH00207  172 --MWQTD--MNNYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYP-FLSSTYWFnpAL 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 245 LIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVR 324
Cdd:MTH00207  247 LLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDLR 326
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 325 YMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVYSF 404
Cdd:MTH00207  327 TMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLWSPNSS 406
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 405 SSSISFIDSSKCISFGILGLLFVAVFGGSLISWLIFPLPSFIVLPFILSVLTFLSVLLGAYMGYFI--FFIKGLVFNSFI 482
Cdd:MTH00207  407 SPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLFttPNITKTPLLINN 486
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 483 TLFNYFFGLMWFMPFISSIYISLFPLNFGYHFNSAFDFGWNELFGGQGLYDVFLYFINYFYSCLDYNFKSYILLFSFWLF 562
Cdd:MTH00207  487 PLSHFASCLMWFLVPLSSQFIMSTPMNLSHNYLKLLDQGWLEMLGAQGTFKMFSRSSNNVMKLQKNIPNNYLMMSFVLLT 566

                  ....*.
gi 1896070403 563 ILFGFM 568
Cdd:MTH00207  567 IIIIMT 572
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
5-568 7.88e-104

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 324.98  E-value: 7.88e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   5 FFFSLFISSLLMFFFSLMFLILdlvffLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFR 84
Cdd:MTH00211   37 LSFFISLIPLLIFLDQGLETIL-----TNWSWINLGLFSLNLSFKFDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINR 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  85 FILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLT-ILSNRVGDVAILMSVVWMF-NYGGW 162
Cdd:MTH00211  112 FFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQaVIYNRIGDIGLLLSMVWLLlNLNSW 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 163 NYFYYCMFFDDSLeasFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWF 242
Cdd:MTH00211  192 EISQLFILNLDLT---LFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQNNQLIL 268
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 243 -FMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQ 321
Cdd:MTH00211  269 gAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQ 348
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 322 DVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGV 401
Cdd:MTH00211  349 DIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGY 428
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 402 YSFSSSISFIDSSKCISFGILGLLFVAVFGGSLISWLIFPLPSFIV-LPFILSVLTFLSVLLGAYMGYFIFFIKGLVFNS 480
Cdd:MTH00211  429 PRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLGLELVNLTHKQLKT 508
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 481 FITLFNYFFGLmwFMPFISSIYISLFPLNFGYHFNSAFDFGWNELFGGQGLYDVFLYFINYFYSCLDYNFKSYILLFSFW 560
Cdd:MTH00211  509 STLSFSNMLGY--YPPIIHRLLPKLSLKWGQTLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTSPQQGLIKSYLALLLLS 586

                  ....*...
gi 1896070403 561 LFILFGFM 568
Cdd:MTH00211  587 LLLILLLF 594
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
15-400 5.84e-85

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 275.89  E-value: 5.84e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  15 LMFFFSLMFLILDLVFFLE-----WEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLV 89
Cdd:MTH00004   42 LAFLISLIPLTLFLNSGTEsittnWPWIFTTTFNIPISFKLDQYSLMFLPIALFVTWSILEFSTWYMASDPHITKFFKYL 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  90 LMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYN-AGMLTILSNRVGDVAILMSVVWMF-NYGGWNYFYy 167
Cdd:MTH00004  122 LIFLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSGRAEANtAALQAIIYNRIGDIGLILSMAWLAmTLNTWEIQQ- 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 168 cMFfdDSLEASFIIMM-IILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFM-L 245
Cdd:MTH00004  201 -LF--SPTQTPTLPLLgLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLLQNNQTALTIcL 277
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 246 IVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRY 325
Cdd:MTH00004  278 CLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRK 357
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896070403 326 MGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:MTH00004  358 MGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTG 432
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
28-494 1.58e-84

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 275.11  E-value: 1.58e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  28 LVFFLEWeiFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIIS 107
Cdd:COG1009    58 VVELYTW--IPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLL 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 108 ILLGWDGLGLISYCLVIYYHNVKSYN-AGMLTILSNRVGDVAILMSVVWMFNYGG-WNY---FYYCMFFDDSLEASFIIM 182
Cdd:COG1009   136 LFVFWELVGLCSYLLIGFWYEKPSARrAARKAFLVTRVGDLGLLLGILLLGAIAGtLNFselLAAAPTILSSPLLTLILL 215
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 183 MIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWF-FMLIVGCLTMFMSGLAANY 261
Cdd:COG1009   216 LLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALSPVWLtVVAIIGAITALFAALIALA 295
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 262 EFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDfQDVRYMGSIISVSPFTSVCFN 341
Cdd:COG1009   296 QTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATGT-RDIRKMGGLRKKMPITAITFL 374
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 342 VSSLSLCGMPFLAGFYSSDIILE-LVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVYSFSSSI-----SFIDSSK 415
Cdd:COG1009   375 IGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKhphesPWLMTLP 454
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 416 CISFGILGLLFVAVFGGSLISWL----IFPLPSFIVLPFILSVLTFLSVLLGAYMGYFIFFIKGL-----VFNSFITLFN 486
Cdd:COG1009   455 LVVLAVLSLVLGLLLPGLLEGLLapaaVLGGELHLAHGLLLNALPLLLSLLGIALGYLLYLKRPLpalaeRLKPLYRLLA 534

                  ....*...
gi 1896070403 487 YFFGLMWF 494
Cdd:COG1009   535 NKWYFDEL 542
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
3-565 2.89e-83

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 272.23  E-value: 2.89e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   3 YVFFFSLFISSLLMFFFSLMFLILD----LVFFLEWeiFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSG 78
Cdd:MTH00208   56 NFSISLLKTLAFLSLINLLIWILLGcpniNISLSNW--LSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSN 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  79 DENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGML-TILSNRVGDVAILMSVVW-M 156
Cdd:MTH00208  134 DPNKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALqAVIYNRIGDIGIILFLSLsL 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 157 FNYGGWNYFYYCMFFDDSLEASFIIMM-IILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNmL 235
Cdd:MTH00208  214 INFNSWNLNEILSLNNSNSFLINILLFgILLAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRTSP-L 292
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 236 LDSGYWF--FMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSY 313
Cdd:MTH00208  293 ISNSPWFlsLCLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSI 372
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 314 IHNLSDFQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRL 393
Cdd:MTH00208  373 IHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRI 452
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 394 FYYSMFGVYSFSSSISFIDSSKCISFGILGLLFVAVFGGSLISWLIFPLPSFIVlPFILSVLTFLSVLLGAymGYFIFFI 473
Cdd:MTH00208  453 IFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPPLTL-PLILKSLPLIVTIIGA--AFSFSFL 529
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 474 KGLVFNSFITLFNYFFGLMWFMPFISSIYISLFPLNFGYHFNS-AFDFGWNELFGGQGLYDVFLYFINYFYSCLDYNFKS 552
Cdd:MTH00208  530 LSLSSNPINSNFFSFLSNQWFFVNISHSIIISFSFFTSLFGSTrTLDRGWSENIGPQGIGNTSSTLSKSYQLTQTGYIKQ 609
                         570
                  ....*....|...
gi 1896070403 553 YILLFSFWLFILF 565
Cdd:MTH00208  610 YLLSSTLLFLLIL 622
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
17-565 1.23e-79

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 261.77  E-value: 1.23e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  17 FFFSLMFLILDLVFFLE-----WEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLM 91
Cdd:MTH00066   42 FFISLIPLMIFINQGLEsittsFHWMNIFNFNINSSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLI 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  92 FVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYN-AGMLTILSNRVGDVAILMSVVW-MFNYGGWNYFYYCM 169
Cdd:MTH00066  122 FLIAMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHARADANtAALQAVLYNRVGDIGLILSMAWlAMNTNSWELQQIFL 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 170 FFDDSLeasFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFM-LIVG 248
Cdd:MTH00066  202 LNDNST---LPLLGLILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLLENNQTALTIcLCLG 278
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 249 CLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRYMGS 328
Cdd:MTH00066  279 ALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGG 358
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 329 IISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVYSFSSSI 408
Cdd:MTH00066  359 LQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLS 438
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 409 SFIDSSKCISFGILGLLFVAVFGGSLISWLIFPL-PSFIVLPFILSVLTFLSVLLGAYMGYFIffIKGLVFNSFITLFNY 487
Cdd:MTH00066  439 PINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDL--AKITSKTTPKTKMHS 516
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1896070403 488 FFGLMWFMPFISSIYISLFPLNFGYHFNS-AFDFGWNELFGGQGLYDVFLYFINYFYSCLDYNFKSYILLFSFWLFILF 565
Cdd:MTH00066  517 FSNLLAFFPTIIHRLSPKTNLNSGQNIAThLTDMTWYEKSGPKGLTNQQLPPIKTITNIQTGLIKTYLTLFLITLLLML 595
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
1-400 2.51e-76

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 253.24  E-value: 2.51e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   1 IYYVFFFSLFisSLLMFFFSLMFLILDlvfflEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDE 80
Cdd:MTH00108   40 ISYAFIISLI--PTMMFIHSGQEMIIS-----NWHWMTIQTLKLSLSFKLDYFSMIFIPVALFVTWSIMEFSMWYMHSDP 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  81 NFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYN-AGMLTILSNRVGDVAILMSVVW-MFN 158
Cdd:MTH00108  113 NINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANtAALQAILYNRIGDIGFILAMAWfLLN 192
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 159 YGGWNYFYycMFFDDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRF-----SN 233
Cdd:MTH00108  193 LNSWDLQQ--IFMLNPNNSNLPLMGLLLAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFhplmeNN 270
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 234 MLLDSgywfFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSY 313
Cdd:MTH00108  271 KTIQT----LTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSI 346
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 314 IHNLSDFQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRL 393
Cdd:MTH00108  347 IHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRI 426

                  ....*..
gi 1896070403 394 FYYSMFG 400
Cdd:MTH00108  427 IFFALLG 433
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
34-481 5.83e-72

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 241.80  E-value: 5.83e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  34 WEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWD 113
Cdd:TIGR01974  65 FPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWE 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 114 GLGLISYCLV-IYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGwnYFYYCMFFDDSLEASFIIMMII-----LA 187
Cdd:TIGR01974 145 GVGLCSYLLIgFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYFG--TLNFQEVFALAPGAFFSALTLIclllfIG 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 188 GMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNM-LLDSGYWFFMLIVGCLTMFMSGLAANYEFDLK 266
Cdd:TIGR01974 223 AMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIK 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 267 SVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRYMGSIISVSPFTSVCFNVSSLS 346
Cdd:TIGR01974 303 RILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLA 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 347 LCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVYSFSSSISFIDSSKCISFGILGLLF 426
Cdd:TIGR01974 383 LIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIVLAV 462
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896070403 427 VAVFGGSLISWLIFPLPSFIV-----------LPFILSVLTFLSVLLGAYMGYFIFFIKGLVFNSF 481
Cdd:TIGR01974 463 GSVFAGFFIVPLFEFLKGVLPtsaepalehhhVPALEIWSPTAVAILGILLAYLLYLGNPTLPAKI 528
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
17-398 1.05e-71

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 241.27  E-value: 1.05e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  17 FFFSLMFLILDLVFFLE-----WEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLM 91
Cdd:MTH00137   48 FFVSLLPLFLFLNQGAEtiitnWNWMNTLTFDINISFKFDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLI 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  92 FVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYN-AGMLTILSNRVGDVAILMSVVWM-FNYGGWNYfyYCM 169
Cdd:MTH00137  128 FLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANtAALQAVIYNRVGDIGLILAMAWMaTNLNSWEI--QQI 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 170 FF-DDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFM-LIV 247
Cdd:MTH00137  206 FAlSKDFDLTLPLLGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLSPLMENNQTALTTcLCL 285
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 248 GCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRYMG 327
Cdd:MTH00137  286 GALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMG 365
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1896070403 328 SIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRL-FYYSM 398
Cdd:MTH00137  366 GLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVvFFVSM 437
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
34-400 1.81e-70

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 238.13  E-value: 1.81e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  34 WEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWD 113
Cdd:PRK06590   66 WTWISVGDFDVDFGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRFFAYLNLFTFSMLMLVLSDNLLQLFFGWE 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 114 GLGLISYCLV-IYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNY-GGWNY-----FYYCMFFDDSLEASFIIMMIIL 186
Cdd:PRK06590  146 GVGLCSYLLIgFWYKKPSAGAAAMKAFIVNRVGDVGLALGIFLLFAEfGSLNYdevfaAAPQFFGLGWSALTLICLLLFI 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 187 AGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNM-LLDSGYWFFMLIVGCLTMFMSGLAANYEFDL 265
Cdd:PRK06590  226 GAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARMSPLfELSPEALLFVAIVGAVTALFAAFIGLVQTDI 305
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 266 KSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRYMGSIISVSPFTSVCFNVSSL 345
Cdd:PRK06590  306 KRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTL 385
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1896070403 346 SLCGMPFLAGFYSSDIILElVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:PRK06590  386 ALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRLIFLVFHG 439
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
48-494 3.85e-64

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 221.03  E-value: 3.85e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  48 LIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLV-IYY 126
Cdd:MTH00210   76 LQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLInFWL 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 127 HNVKSYNAGMLTILSNRVGDVAILMSVVWMFN-YGGWNY---FYYCMFFDDSLEASFIIMMIILAGMTKSAQIPFSSWLP 202
Cdd:MTH00210  156 TRIKANKAAIKAMLINRVGDIGLVLAMIMILKeFGTLEFstiSSLLVTNINKESLTIICLLLFIGAVGKSAQLGLHTWLP 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 203 AAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWF-FMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMM 281
Cdd:MTH00210  236 DAMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEGSPLALtIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMV 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 282 SILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDI 361
Cdd:MTH00210  316 MVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDL 395
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 362 ILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVYSFSSSISFID--SSKCISFGILGLLFVAVFGGSL----- 434
Cdd:MTH00210  396 ILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKEVFIGVheSSWNITFPLLLLAFGSIFVGYLgkevv 475
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1896070403 435 ISWLIFPL-PSFI-VLPFILSvltflsvLLGAYMGYFIFFIKGLVFNSFITLFNYFFGLMWF 494
Cdd:MTH00210  476 LSNVIPPIvPNSIkMIPLLFS-------LLGALLAFVIYNSMVFLIKISRRGVSIRLYHVIY 530
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
9-397 6.39e-63

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 217.64  E-value: 6.39e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   9 LFISSLLMFFFSLMFLIL-------DLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDEN 81
Cdd:MTH00020   30 ILTSSCLIISLSWSFLIFyeilfnsSTTYIKLWRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPH 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  82 FFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLV-IYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYG 160
Cdd:MTH00020  110 IPRFMSYLSLFTFLMVVLVTSDNYLQLFIGWEGVGLCSYLLInFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRF 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 161 G---WNYFYYCMFFDDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNML-L 236
Cdd:MTH00020  190 GsldFSSVFNMVVSAPSSDITLICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFeQ 269
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 237 DSGYWFFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHN 316
Cdd:MTH00020  270 APLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHA 349
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 317 LSDFQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYY 396
Cdd:MTH00020  350 LSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYL 429

                  .
gi 1896070403 397 S 397
Cdd:MTH00020  430 T 430
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
14-520 5.44e-58

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 202.45  E-value: 5.44e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  14 LLMFFFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFV 93
Cdd:MTH00095    7 LILFFFFFLLLFILFLPFMKLNLFFLEWDFLSLKFNFYFNSLLFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFV 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  94 FSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWnyfyycmFFDD 173
Cdd:MTH00095   87 GSMFMLNFSNSVFTMLLSWDLLGISSFFLVLFYNNWDSNSGAMNTALTNRIGDFFIFLFFSGFIFSSYY-------FFSF 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 174 SLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFMLIVGCLTMF 253
Cdd:MTH00095  160 SFFSSSMILMLLLTSFTKSAQFPFSSWLPKAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLILNMNVMKIMLLIGLFTMF 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 254 MSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRYMGSIISVS 333
Cdd:MTH00095  240 FSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLP 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 334 PFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVYSFSSSISFIDS 413
Cdd:MTH00095  320 MFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFLSFSKVVNVYSSSVL 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 414 SKCISFgilGLLFVAVFGGSLISWLIFPLPSFIVLPFILSVLTFLSVLLGAYMGYFIFFIKGLVFNSFITLFNYFFGLMW 493
Cdd:MTH00095  400 MNFLSL---MLVFFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKL 476
                         490       500
                  ....*....|....*....|....*..
gi 1896070403 494 FMPFISSIYISLFPLNFGYHFNSAFDF 520
Cdd:MTH00095  477 KNLKFFDLFLNKFGYKGFNFFSSFSFF 503
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
43-399 3.67e-54

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 194.86  E-value: 3.67e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  43 SIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCL 122
Cdd:PRK07376   82 HLPMGYVIDPLGAVMLVLVTTVALLVMIYSDGYMAHDPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLL 161
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 123 VIYYHNVKS-YNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFyycMFFDDSLE------------ASFIIMMIILAGM 189
Cdd:PRK07376  162 VGFWYDRKGaADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDF---DGIADRLSelvssgavsgwlALLLCILVFLGPM 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 190 TKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLldSGYWFFMLI---VGCLTMFMSGLAANYEFDLK 266
Cdd:PRK07376  239 AKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARMYPVF--EQFPAVMTViawTGAITAFLGASIALTQNDIK 316
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 267 SVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDF--------QDVRYMGSIISVSPFTSV 338
Cdd:PRK07376  317 KGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEVvghdpvlaQDMRLMGGLRKYMPITAI 396
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896070403 339 CFNVSSLSLCGMPFLAGFYSSDIILELVSMSyvNVLIFFLFFFSTGLTSMYSFRLfYYSMF 399
Cdd:PRK07376  397 TFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRM-YFLTF 454
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
12-365 4.15e-50

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 183.62  E-value: 4.15e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  12 SSLLMFFFSLMFLILDLVFFLEweIFSLNGSSIVMT---LIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILL 88
Cdd:MTH00032   39 STLIALFLAYEVLINDAVVHIE--LYKWIESEIFIThigLLYDTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCY 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  89 VLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHN-VKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYF-- 165
Cdd:MTH00032  117 LSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTrIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFlt 196
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 166 --------------YYCMFFDDSLEASFIIMMIIL--AGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLI 229
Cdd:MTH00032  197 fnggsvgsgimdrgYYGGGAYESPLAPFAIIGILLliGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMI 276
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 230 RFSNMLLDSGYWFFML-IVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSM-GFPILSFFHLLTHALFKALLF 307
Cdd:MTH00032  277 RSFPLFEKAPLTLLIItIFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLF 356
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1896070403 308 LCAGSYIHNLS-DFQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILEL 365
Cdd:MTH00032  357 LSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
102-382 6.38e-44

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 157.86  E-value: 6.38e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 102 SPNIISILLGWDGLGLISYCLVIYYH-NVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFY----YCMFFDDSLE 176
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGkSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDelskALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 177 ASFIIMMIILAGMTKSAQIPFSSWLPAA-MAAPTPVSSLVhSSTLVTAGVYLLIRFSNMLLDSGYWF--FMLIVGCLTMF 253
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSSPFIqqILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 254 MSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPI---LSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRYMGSII 330
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1896070403 331 SVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFS 382
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
PRK12650 PRK12650
DUF4040 family protein;
40-364 7.62e-42

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 161.75  E-value: 7.62e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  40 NGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLIS 119
Cdd:PRK12650   67 NGVDVNLALRADALSLFFALLALVIGAVVFIYSARYLPRKKGNTSFYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLAS 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 120 YCLViyyhnVKSYNAG----MLTILSNRVGDVAILMSVVWMFNYGG------------WNyfyycmffDDSLEASFIIMM 183
Cdd:PRK12650  147 FFLI-----ARSGSGGeagsIRTLILTFFGGLTLLAAVAIAATQTGttslsgilhsdvWA--------EKPGLTTVVAVL 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 184 IILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFMLI-VGCLTMFMSGLAANYE 262
Cdd:PRK12650  214 IAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAVWNWLLIiVGMITALMGAVFAVQK 293
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 263 FDLKSVIALSTLSQLGLMMSILSMGFPI---LSFFHLLTHALFKALLFLCAGSYIHNlSDFQDVRYMGSIISVSPFTSVC 339
Cdd:PRK12650  294 TDLKKLTAYSTVSQLGWIVATIGVGTPFaltAAVVHTLAHALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVS 372
                         330       340
                  ....*....|....*....|....*
gi 1896070403 340 FNVSSLSLCGMPFLAGFYSSDIILE 364
Cdd:PRK12650  373 VTIAALSMAAVPPLFGFVSKEGMLT 397
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
47-402 1.53e-41

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 160.01  E-value: 1.53e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  47 TLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYY 126
Cdd:TIGR00940  70 TLYMDGLALLFSLLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIVSFLLISYW 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 127 -HNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFYYCMFFDDSLEAS----FIIMMIILAGMTKSAQIPFSSWL 201
Cdd:TIGR00940 150 hHRAHSRYGAQKSLTITVFGGLAMLGGLILLGKITGSFSIDAVIASADAIRNSplfgTAMVLVLLGAFTKSAQFPFHIWL 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 202 PAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFML-IVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLM 280
Cdd:TIGR00940 230 PDAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAGTEAWFWIVgLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLI 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 281 MSILSMGFPILSF----------------FHLLTHALFKALLFLCAGSYIHNlSDFQDVRYMGSIISVSPFTSVCFNVSS 344
Cdd:TIGR00940 310 MVLLGLGSPSYHYqgddskiyalaavaavFHLINHATFKGSLFMAAGIIDHE-TGTRDIRKLGGLFHIMPITFTLAMIAS 388
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896070403 345 LSLCGMPFLAGFYSSDIILE---------LVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVY 402
Cdd:TIGR00940 389 AAMAGVPPFNGFLSKEMFFAeaitahlvnPFDTVTLGYLFPYVATVASVFTFVYSLRFIHGVFFGRP 455
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
47-396 7.08e-41

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 153.38  E-value: 7.08e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  47 TLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYY 126
Cdd:COG0651    71 VLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALG 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 127 HNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGG---WNYFYYCMFFDDSLEASFIIMMIILAGMTKSAQIPFSSWLPA 203
Cdd:COG0651   151 GTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGtlnMADLAARLAELDPGLLLAAFALLLVGFGIKAALFPLHFWLPD 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 204 AMA-APTPVSSLVhSSTLVTAGVYLLIRFSNMLLDSGYWFF----MLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLG 278
Cdd:COG0651   231 AYPaAPSPVSALL-SGLLTKVGVYAILRVLTLLFGADPALFlgtlLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIG 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 279 LMMSILSMGFPIL---SFFHLLTHALFKALLFLCAGSYIHNLSDfQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAG 355
Cdd:COG0651   310 YILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERATGT-RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSG 388
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1896070403 356 FYSSDIILElVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYY 396
Cdd:COG0651   389 FVSKWLLLQ-AALEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
8-394 1.14e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 151.57  E-value: 1.14e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   8 SLFISSLLMFFFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFIL 87
Cdd:MTH00063    1 SVLLVSLLLCLLIFFLFLVGVSSSVSLNFLSFGGYSWLINFDFDYVTFGVLLMLLICFYYSLLYTFHYFGGSYASFLLNK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  88 LVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLTILSNRVGDVAILMSVvwmfnygGWNYFYY 167
Cdd:MTH00063   81 LIVLFVLVMGILVLTGDFLSTLIFWEYLGVVSFFLILFYDNFLSLRASVVTLVSSRFGDVCLFLLI-------GLSCWGG 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 168 CMFFddsleasFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFMLIV 247
Cdd:MTH00063  154 SGSF-------LCCLFFFLIVFTKSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGFSWLSIFFSVL 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 248 GCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLSDFQDVRYMG 327
Cdd:MTH00063  227 LLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNCVY 306
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896070403 328 SIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLF 394
Cdd:MTH00063  307 SSILYGSWNLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRLC 373
PRK12646 PRK12646
DUF4040 family protein;
51-364 8.63e-39

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 151.83  E-value: 8.63e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  51 DWMSLIFSSFVIFISSVVIYYSIDYMS-GDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIY-YHN 128
Cdd:PRK12646   77 DGLSLMFSLIISLIGIAVFFYATQYLSsRKDNLPRFYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYwYNN 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 129 VKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFYYCMFFDDSLEAS----FIIMMIILAGMTKSAQIPFSSWLPAA 204
Cdd:PRK12646  157 GDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILGQADHIKNHglfiPMIFMFLLGAFTKSAQFPFHIWLPRA 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 205 MAAPTPVSSLVHSSTLVTAGVYLLIRFSNML-LDSGYWFFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSI 283
Cdd:PRK12646  237 MAAPTPVSAYLHSATMVKAGIFLLFRFTPLLgLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAM 316
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 284 LSMG--------------FPILSF---FHLLTHALFKALLFLCAGSYIHNlSDFQDVRYMGSIISVSPFTSVCFNVSSLS 346
Cdd:PRK12646  317 VGIGggyaqhqqdaiasiYVFVLFaalFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALS 395
                         330
                  ....*....|....*...
gi 1896070403 347 LCGMPFLAGFYSSDIILE 364
Cdd:PRK12646  396 MAGVPFLNGFLSKEMFLD 413
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
51-400 2.52e-38

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 150.45  E-value: 2.52e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  51 DWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYH-NV 129
Cdd:PRK12647   63 DGLSLTFALLITGIGTLIVLYAGGYLKGHPDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSFLLIGFNHeRE 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 130 KSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFYYCMFFDDSLEAS---FIIMMIILAG-MTKSAQIPFSSWLPAAM 205
Cdd:PRK12647  143 AARRAALQALLVTGGGGLALLAGLILLGNVTGTYSLSELLASGDVIREHplyLAILLLVLGGaFTKSAQFPFHFWLPNAM 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 206 AAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFML-IVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSIL 284
Cdd:PRK12647  223 EAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPLWQTILpLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLL 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 285 SMGFP--ILSFF-HLLTHALFKALLFLCAGSYIHNlSDFQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDI 361
Cdd:PRK12647  303 GLGSElaIKAAVlFLVAHSLYKGALFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKEL 381
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1896070403 362 ILE-LVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:PRK12647  382 IYEaLLEAPLWSLILTVAAVLGNALMVAVAFLVGIKPFLG 421
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
43-356 2.51e-36

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 145.07  E-value: 2.51e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  43 SIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDE-NFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYC 121
Cdd:PRK12644   65 GLDLAFRLDALAALMSLLVLGVGALVLLYCARYFDDDEpRLGRFAAELVAFAGAMFGLVTSDNLLLLYVFWELTTVLSFL 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 122 LVIYYHNVK-SYNAGMLTILSNRVGDVAILMSVVWMFN-YGGWNYFYYCMFFDDSLEASFIIMMIILAGMTKSAQIPFSS 199
Cdd:PRK12644  145 LIGHYAERAaSRRAALQALLVTTAGGLAMLVGIIILGQaAGTYRLSELLADPPTGPAVSVAVVLILVGALSKSAIVPFHF 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 200 WLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFMLIV-GCLTMFMSGLAANYEFDLKSVIALSTLSQLG 278
Cdd:PRK12644  225 WLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADVPVWRPTVLVlGLATMLLGGWRALRQHDLKLILAYGTVSQLG 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 279 LMMSILSMGFP---ILSFFHLLTHALFKALLFLCAGSYIHNlSDFQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAG 355
Cdd:PRK12644  305 FLTVLVGIGTRdaaLAGLAMLLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLG 383

                  .
gi 1896070403 356 F 356
Cdd:PRK12644  384 F 384
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
47-358 1.59e-35

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 142.64  E-value: 1.59e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  47 TLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYY 126
Cdd:PRK12648   71 SLRLDGLAWLFALLILGIGLLVVLYARYYLSPADPVPRFFSFLLLFMGAMLGIVLSGNLILLVVFWELTSLSSFLLIGYW 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 127 HNVKSYNAG--M-LTI-----LSNRVGdVAILMSVVWMFNyggwnyfyycmfFDDSLEASFII----------MMIILAG 188
Cdd:PRK12648  151 HHRADARRGarMaLTVtgaggLALLAG-VLLLGHIVGSYD------------LDVVLAAGDLIrahplyppalVLILLGA 217
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 189 MTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFMLI-VGCLTMFMSGLAANYEFDLKS 267
Cdd:PRK12648  218 FTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPVLAGTEEWFWIVGgAGLITLLLGAYFALFQHDLKG 297
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 268 VIALSTLSQLGLMMSILSMGFP---ILSFFHLLTHALFKALLFLCAGSYIHNlSDFQDVRYMGSIISVSPFTSVCFNVSS 344
Cdd:PRK12648  298 LLAYSTISHLGLITLLLGLGSPlaaVAAIFHIINHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAA 376
                         330
                  ....*....|....
gi 1896070403 345 LSLCGMPFLAGFYS 358
Cdd:PRK12648  377 AAMAGVPLLNGFLS 390
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
44-402 8.71e-35

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 140.06  E-value: 8.71e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  44 IVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGD-ENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCL 122
Cdd:PRK12645   70 INFTLYVDGLSLLFALLITGIGSLVVLYSIYYLSKKkEQLGNFYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLL 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 123 VIY-YHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFYYCMFFDDSLEAS--FIIMM--IILAGMTKSAQIPF 197
Cdd:PRK12645  150 ISYwYEREASRYGAQKSMLITVFGGLSMLGGFILLYIMTGSFSIREMIANADEIQNSplFIPAMilILLGAFTKSAQFPF 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 198 SSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFML-IVGCLTMFMSGLAANYEFDLKSVIALSTLSQ 276
Cdd:PRK12645  230 YIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFAGSQVWFWTVtLVGLITLFWGSLNAVKQTDLKGILAFSTVSQ 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 277 LGLMMSILSMGFPILSF----------------FHLLTHALFKALLFLCAGSYIHNlSDFQDVRYMGSIISVSPFTSVCF 340
Cdd:PRK12645  310 LGLIMSLLGIGAASLHYqgddskiyaaaitaaiFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIA 388
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896070403 341 NVSSLSLCGMPFLAGFYSSDIILE---------LVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFGVY 402
Cdd:PRK12645  389 LIGALSMAGLPPFNGFLSKEMFFEsmlnateanLFSLDTWGVLFPVIAWVASVFTFVYSIIFIFKTFFGKY 459
ndhF CHL00025
NADH dehydrogenase subunit 5
18-394 1.75e-34

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 138.87  E-value: 1.75e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  18 FFSLMFLILDLVFFLEWEIFSLNGSSIVMTLiFDWM-----SLIFSSFV--------IFISSV---VIYYSIDYMSGDEN 81
Cdd:CHL00025   42 FPSILLLSIVMIFSLNLSIQQINGSSIYQYL-WSWTinndfSLEFGYLIdpltsimlILITTVgilVLIYSDNYMSHDQG 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  82 FFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSY-NAGMLTILSNRVGDVAILMSVV---WMf 157
Cdd:CHL00025  121 YLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAaNACQKAFVTNRVGDFGLLLGILgfyWI- 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 158 nYGGWNYFYYCMFFDDSLE--------ASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLI 229
Cdd:CHL00025  200 -TGSFEFRDLFEIFNNLIYnnevnllfATLCAFLLFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVA 278
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 230 RFSNMLLDSGYWF-FMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFL 308
Cdd:CHL00025  279 RLLPLFIVIPYIMnLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFL 358
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 309 CAGSYIHNLSDF--------QDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILelvSMSYVNVLIFFLFF 380
Cdd:CHL00025  359 GSGSVIHSMEPIvgyspdksQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEIL---NDSWLYSPIFAIIA 435
                         410
                  ....*....|....*
gi 1896070403 381 FST-GLTSMYSFRLF 394
Cdd:CHL00025  436 WSTaGLTAFYMFRIY 450
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
14-380 1.81e-34

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 136.26  E-value: 1.81e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  14 LLMFFFSLMFLILDLVFFLEWEIFSLN-----GSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMS-------GDEN 81
Cdd:PRK06525   32 LFAALTTLCMLSLAYAFYQAGKVAVTLtlvnlGDVALFGLVIDPVSVLIGFVVVLLGLLVTLYSTGYMSpgnrehpVHEG 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  82 FFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGG 161
Cdd:PRK06525  112 TGRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISYYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTG 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 162 WNYFYYCMFFDDSLEaSFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFsnmLLDSG-- 239
Cdd:PRK06525  192 TFALSALSGLHGSLK-YLVFLGILFAAWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARA---IQSMGpi 267
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 240 ---YWFFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILS-------MGFPIlSFFHLLTHALFKALLFLC 309
Cdd:PRK06525  268 phvIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSlailgsrLALEG-SIAYIFNHAFAKSLFFLV 346
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1896070403 310 AGSYIHNLSDfQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSS-DIILELVSMSYVNVLIFFLFF 380
Cdd:PRK06525  347 AGALSYSCGT-RLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKfPIFAAGFELSVEYWILLPAMV 417
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
51-364 2.50e-29

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 123.40  E-value: 2.50e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  51 DWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYY-HNV 129
Cdd:PRK12649   79 DGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLIGYWrHRP 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 130 KSYNAGMLTILSNRVGDVAILMSVVWMFNYGGwNYFYYCMFFDDSLEASF--------IIMMIILAGMTKSAQIPFSSWL 201
Cdd:PRK12649  159 ESVYGATKSLLITAGGGLFMFAGFLLLHVITG-TYDIATILQDSELIENIkghplfliTLILIFIGAAAKSAQGPFYIWL 237
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 202 PAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFMLI-VGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLM 280
Cdd:PRK12649  238 PNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTEAWFILVSgTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYL 317
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 281 MSIL---SMGFPILSF----FHLLTHALFKALLFLCAGSYIHNLSDfQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFL 353
Cdd:PRK12649  318 MTMYgytTYHEPGLGVaaatFHLLNHATFKACLFLVAGIVAHEAAT-RDIRKLGGLRKEMPITFIVASIAALAMAGIPPL 396
                         330
                  ....*....|.
gi 1896070403 354 AGFYSSDIILE 364
Cdd:PRK12649  397 NGFLSKEMFYE 407
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
183-400 5.40e-25

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 108.43  E-value: 5.40e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 183 MIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFS------NMLLDSGYWFFMLIVGCLTMFMSG 256
Cdd:PRK08375  207 FVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYftvfggDFRFALGLGWLLAVLALLSMLVGS 286
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 257 LAANYEFDLKSVIALSTLSQLG---LMMSILSMGFPILSFFHLLTHALFKALLFLCAGSyIHNLSDFQDVRYMGSIISVS 333
Cdd:PRK08375  287 LAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGA-IEVTYGTRRLSELSGLGRRM 365
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896070403 334 PFTSVCFNVSSLSLCGMPFLAGFYSSDIILeLVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:PRK08375  366 PLTAAAFAVASLSLIGVPPTSGFVSKWYLV-VGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFG 431
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
389-568 1.23e-24

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 101.09  E-value: 1.23e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 389 YSFRLFYYSMFGVYSFSSSISFIDSSKCISFGILGLLFVAVFGGSLISWLIFPLPSFIVLPFILSVLTFLSVLLGAYMGY 468
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 469 FIF-FIKGLVFNSFITLFNYFFGLMWFMPFISSIYISLFPLNFGYHFNSAFDFGWNELFGGQGLYDVFLYFINYFYSCLD 547
Cdd:pfam06455  81 ELSnLSNKQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNSQK 160
                         170       180
                  ....*....|....*....|.
gi 1896070403 548 YNFKSYILLFSFWLFILFGFM 568
Cdd:pfam06455 161 GLIKIYLLSFLLWLLLLLLLI 181
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
91-358 5.35e-23

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 103.43  E-value: 5.35e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  91 MFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKS-YNAGMLTILSNRVGDVAILMSVVWMFNYGGwnyfyycm 169
Cdd:PRK06521  121 LFLASMVLVLLADDAFSFLVAWETMSLSSWFLVIANHREAEiRRAGFLYLLMAHAGALAILLAFGLLARESG-------- 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 170 FFD---------DSLEASFIIMMIILAGMTKSAQIPFSSWLPAAM-AAPTPVSSLVhSSTLVTAGVYLLIRFSNMLL-DS 238
Cdd:PRK06521  193 SYDfaamraahlSPFWASLVFLLALFGFGAKAGLVPLHVWLPRAHpAAPSHVSALM-SGVMLKVAIYGILRVVFDLLgAP 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 239 GYW--FFMLIVGCLTMFMSGLAANYEFDLKSVIALST-------LSQLGLMMSILSMGFPILS-------FFHLLTHALF 302
Cdd:PRK06521  272 GWWwgVLVLALGAISAVLGVLYALAEHDLKRLLAYSTienigiiFVGLGLAMVFIAYGMPLLAalaltaaLYHLLNHALF 351
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1896070403 303 KALLFLCAGSYIHNLSDfQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYS 358
Cdd:PRK06521  352 KSLLFLGAGAVLHATGT-RDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVS 406
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
8-364 1.24e-22

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 102.12  E-value: 1.24e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   8 SLFISSLLMFFFSLMFLildlvFFLEWEIFSLNG--SSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDY---MSGDENF 82
Cdd:PRK08667   36 WLVIAIALLLFAGSLQL-----FTGNPLDIPLWGiaPGLDITFHIDRLAAFFIILIGLVSLCVAIYSLGYnehMSSNERA 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  83 FRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIY-YHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGG 161
Cdd:PRK08667  111 NLLSALTALFILSMLGVVASANTFSFLFFWEIMALSSFFLVMNdYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTG 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 162 wnYFYYCMFFDDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAM-AAPTPVSSLVhSSTLVTAGVYLLIRFSNMLLDSGY 240
Cdd:PRK08667  191 --SFELSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHpASPSNVSALM-SGVMLKVAVYGLVRFLMDVLSPEL 267
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 241 WFFMLIV--GCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSM-------GFPILSF-------FHLLTHALFKA 304
Cdd:PRK08667  268 WWGVLILlaGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifgvyGLDTLALlalggalFHSLNHALFKS 347
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 305 LLFLCAGSYIHNLSDfQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILE 364
Cdd:PRK08667  348 LLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
140-379 3.10e-22

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 100.75  E-value: 3.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 140 LSNRVGDVAILMSVVWMFNY-GGWNyfyycmfFDD-----------SLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAA 207
Cdd:PRK07390  178 LTKRVGDLLLLMGVVALSPLaGTLN-------FSDlaawaatanldPLTATLLGLALIAGPTGKCAQFPLHLWLDEAMEG 250
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 208 PTPvSSLVHSSTLVTAGVYLLIRFSNML-LDSGYWFFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSM 286
Cdd:PRK07390  251 PNP-ASILRNSVVVATGAWVLIKLQPVLaLSPVALTVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGL 329
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 287 GFPILSFFHLLTHALFKALLFLCAGSYIHNLSDfQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELV 366
Cdd:PRK07390  330 QQPDIALLLLLTHAIAKALLFMSVGSIILTTIT-QDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWALLRLADGL 408
                         250
                  ....*....|...
gi 1896070403 367 SMSYVNVLIFFLF 379
Cdd:PRK07390  409 WAVSPWLVGVLLL 421
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
11-312 3.49e-21

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 97.08  E-value: 3.49e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  11 ISSLLMFFFSLMFLILdlvFFLEWEIFSLNgssivmTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFiLLVL 90
Cdd:PRK08168   37 AASLAGLFLALLGLVL---FATGAAWPAAA------WLEVSGLGLVMAALVQLLGWVIGRFSHRYLQGEPGQRRY-VRAL 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  91 MFVFSMV-LLIFSPNIISILLGWDGLGLISYCLVIYYHNVK-SYNAGMLTILSNRVGDVAILM-SVVWMFNYGGWN---- 163
Cdd:PRK08168  107 AGVLAAVhLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRPfARLAAHKKFIADRLAELLLLAaAALAYLEVGSLSlsal 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 164 YFYYCMfFDDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSStLVTAGVYLLIRFSNMLLDSGY--W 241
Cdd:PRK08168  187 WAHLAA-QGASPSLQAAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAG-VVNLGGFVLIRFAPLLEQAPParW 264
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896070403 242 fFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGS 312
Cdd:PRK08168  265 -LLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSASE 334
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
47-400 2.04e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 91.57  E-value: 2.04e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  47 TLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYY 126
Cdd:PRK12667   77 VYEVDLLGALLGLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYY 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 127 HNVK-SYNAGMLTILSNRVGDVAILMSVVWMFN--------------YGGWNYFYYCMFFDDSLEASFIIMMIILAGMTK 191
Cdd:PRK12667  157 RDRGdAVEAAIKYALIGAVGTTLYFLALAFLYAtfgtlnmadlsakiRGLSFPLTGGLAGNPPLALGVALALALWAFTIK 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 192 SAQIPFSSWLPAAM-AAPTPVSSLVhSSTLVTAGVYLLIR-----FSNMLLDSGYWFFMLIV----GCLTMFMSGLAANY 261
Cdd:PRK12667  237 AAIFPNHFWLPDAHpAAPSPVSAML-SGLVVNVGAYAIIRflytiFGISPSLIDFRAALSPIliilGAVSAIIGALMMVV 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 262 EFDLKSVIALSTLSQLGLMMSILSMGFPIL---SFFHLLTHALFKALLFLCAGSYIHNlSDFQDVRYMGSIISVSPFTSV 338
Cdd:PRK12667  316 QKDVKRLLAYSTISHMGYIFMGIGIGTQLGlaaALFHIINHAIAKSLLFLASGVFIHA-AGTRDIDELAGLGRKMPIASF 394
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1896070403 339 CFNVSSLSLCGMPFLAGFYSSDIILELVSMSYVNVLIFFLFFFSTgLTSMYSFRLFYYSMFG 400
Cdd:PRK12667  395 AFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASA-ISLVGYFRAWYSLFFG 455
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
8-399 3.14e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 87.56  E-value: 3.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   8 SLFISSLLMFFFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGD--ENFFRF 85
Cdd:PRK06589   39 FLLITISIFFFGNILLIDLLFLKGIRAQFELMDFGNYSIGLHLEPLGLIFLLLIGFLWICALLYTPKYLAINniDSSSRF 118
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  86 ILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGM--LTILSNRvGDVAILMSVVWMFNYGGWN 163
Cdd:PRK06589  119 LFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYkyLKILMIS-ALLLFLPAVILIYTKTGNL 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 164 YFYYCMFFddSLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIR-------FSNMLL 236
Cdd:PRK06589  198 DFVSGGLF--SKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKillyifgLSYLQR 275
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 237 DSGYWFFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPI---LSFFHLLTHALFKALLFLCAGSy 313
Cdd:PRK06589  276 IFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKalgAAILHLVSHSFAKICLFYSMGS- 354
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 314 IHNLSDFQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVSMS---YVNVLIFFLFFFSTGLTSMYS 390
Cdd:PRK06589  355 IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYL 434

                  ....*....
gi 1896070403 391 FRLFYYSMF 399
Cdd:PRK06589  435 LKILSSIYK 443
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
47-364 6.26e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 86.54  E-value: 6.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  47 TLIFDWMSLIFSSFVIFISSVVIYYSIDymSGDENFFRFILLVLMFVFSMVLLifSPNIISILLGWDGLGLISYCLVIYY 126
Cdd:PRK07234   62 TLRADALSGYFILTNALVTLAVIFYCWE--SAKTRFFYAQLLILHGSVNAAFV--CADLISLYVALEVLSIATFLLVAYP 137
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 127 HNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFYycmffDDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAMA 206
Cdd:PRK07234  138 RTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFS-----GLATADPEAFALIALGLLVKGGIFVSGLWLPLTHS 212
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 207 APTPVSSLVHSSTLVTAGVYLLIRFSnmLLDSGYWFFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSIlsm 286
Cdd:PRK07234  213 EAEPPVSALLSGVVVKAGVFPLVRCA--LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAA--- 287
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1896070403 287 gfPILSFFHLLTHALFKALLFLCAGSYIHnlSDFQDVRYMGSIISVSPFTSvcfnVSSLSLCGMPFLAGFYSSDIILE 364
Cdd:PRK07234  288 --PLVGGLYALAHGLVKSTLFLCAGALPS--RNFTELISQMLGIGKWIPLT----MASFSIAGFPLLAGFVSKVLTLK 357
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
40-312 7.25e-16

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 80.46  E-value: 7.25e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  40 NGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWdGLGLIS 119
Cdd:PRK08601   60 NGDVVVGPWHLDTLAWLMAFFVLTLGFIIQRFSVRYLLGDRSYRKYFALFTFTTGFASLAWLSGDLRLMALCW-GATLLG 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 120 YCLVIyyhNVKSY-----NAGMLTILSNRVGDVAILMSVVWMFNYGGwNYFYYCMFFDDSL------EASFIIMMIILAG 188
Cdd:PRK08601  139 LTLLI---GLNKGwkvarEAAKISGMLFLISWLALALAIVWLFIATG-EWQLTSVLSNENLaqlgtwEKTGINLLLILAV 214
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 189 MTKSAQIPFSSWLPAAMAAPTPVSSLVHSStLVTAGVYLLIRFSNMLLDSGYWFFMLIVGCLTMFMSGLAANYEFDLKSV 268
Cdd:PRK08601  215 MIPAAQWPFQRWLIESAVAPTPVSAIMHAG-LVNAGGIMLTRFSPLFHDDIAQILLLIFASISVLIGTGISLVQVDYKRQ 293
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1896070403 269 IALSTLSQLGLMMSILSMGFPILSFFHLLTHALFKALLFLCAGS 312
Cdd:PRK08601  294 LVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGS 337
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
51-400 2.38e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 75.52  E-value: 2.38e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  51 DWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYYHNV- 129
Cdd:PRK08376   89 DLFGAFMALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTw 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 130 KSYNAGMLTILSNRVGDVAILMSVVWMF-NYGGWN--YFYYCMFFDDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAM- 205
Cdd:PRK08376  169 EAIEAGIKYMFVGSLASSMVLLGIALLYgQYGTLNmaYLAVKMSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYp 248
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 206 AAPTPVSSLVHSSTLvtAGVYLLIR-----FSNMLLDSGYWFFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLM 280
Cdd:PRK08376  249 AAPSSISAMLLVIKQ--AGLYALARvlfsiYGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYM 326
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 281 M-----SILSMGFPILS----------FFHLLTHALFKALLFLCAGSYIHNLSDfQDVRYMGSIISVSPFTSVCFNVSSL 345
Cdd:PRK08376  327 LlglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTAGAVIYETGT-RNLNELGGLARTMPKTTIAFLIGAA 405
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1896070403 346 SLCGMPFLAGFYSSDIILELVSMsyVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:PRK08376  406 AIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVLTLASFVKVFHTAFFG 458
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
183-400 2.40e-13

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 72.49  E-value: 2.40e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 183 MIILAGMTKSAQIPFSSWLPAA-MAAPTPVSSLVhSSTLVTAGVYLLIRFSNMLLDSGYW----FFMLIVGCLTMFMSGL 257
Cdd:PRK08377  211 LLIFGLAVEAELFPLNAWAPDAyQAAPHPITVMF-SAFVVKAGLYAMARILYLMQNANGWssvlKLVIIMATLTVFFAEL 289
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 258 AANYEFDLKSVIALSTLSQLGLMMSILSMGFPI---LSFFHLLTHALFKALLFLCAGSYIHNL--SDFQDVRYMGSIIsv 332
Cdd:PRK08377  290 SALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGYVGITLggTEIEKFEGLGKRM-- 367
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1896070403 333 sPFTSVCFNVSSLSLCGMPFLAGFYSSDIILeLVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:PRK08377  368 -PLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRLIHTMWFK 433
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
180-400 7.71e-12

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 67.67  E-value: 7.71e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 180 IIMMIILAGMTKSAQIPFSsWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLD---SGYWFFMLIVGCLTMFMSG 256
Cdd:PRK12663  209 IALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPqerELLHPLLATMAAITMVIGA 287
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 257 LAANYEFDLKSVIALSTLSQLGLMMSILSMGFPIL---SFFHLLTHALFKALLFLCAGSYIHnLSDFQDVRYMGSIISVS 333
Cdd:PRK12663  288 LGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKE 366
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 334 PFTSVCFNVSSLSLCGMPFLAGFYSSDIILE--LVSMSYVNVLIFFLfffsTGLTSMYS-FRLFYYSMFG 400
Cdd:PRK12663  367 PLFGALFLILIFAIGGLPPFSGFWGKVLLVQgaLDNGAYILLALMLI----TSLITMYSlFRIFFLAYWG 432
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
4-400 6.03e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 65.02  E-value: 6.03e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   4 VFFFSLFISSLLMFFFS---------LMFLILDLVFFLEW-------EIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSV 67
Cdd:PRK08668    5 LLLLTPLIGSVLAYLLKkinekigviGNALPLLFLIKLYFtlkvgtgEKLTLFFGGFKLTFTLTHLSWFFAMISLLVIFS 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  68 VIYYSIDYMSGDENFFRfiLLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYcLVIYYHNVKSYNAGMLTILSNRVGDV 147
Cdd:PRK08668   85 VAFFMVSEKTKNDAYFN--MFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLKYFVLSAIGAY 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 148 AILMSVVWMFN-YGGWNYF--YYCMFFDDSLE-ASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTA 223
Cdd:PRK08668  162 AMLYAIFLIYAkTGTFDFAdiSQGLINDTSTGfALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKL 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 224 GVYLLIRFSNMLLDSGYW-------------FFMLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPI 290
Cdd:PRK08668  242 GAYGFLLVLYVLPGTKLFsefgtyrgvplfnYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSL 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 291 L---SFFHLLTHALFKALLFLCAGSYIHNLSDfQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIILELVS 367
Cdd:PRK08668  322 GfagGLFHVFNHALFKGLFFLIFAAVIYRTGT-TKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALI 400
                         410       420       430
                  ....*....|....*....|....*....|...
gi 1896070403 368 MSYVNVLIFFLFFFSTGlTSMYSFRLFYYSMFG 400
Cdd:PRK08668  401 SKGMPITAFMAFFGSIG-SFLYVFRPLAGVFLG 432
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
15-358 6.43e-11

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 64.75  E-value: 6.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  15 LMFFFSLMFLILDLVFFLeWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSG-DENFFRFILLVLMFV 93
Cdd:COG1007    34 LLAGLALLGLLLALALLL-LALGGGTGTAFGGMFVVDGFALFFKLLILLAALLVLLLSRDYLERrGLLRGEFYALLLFAT 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  94 FSMVLLIFSPNIISILLGWDGLGLISYCLV-IYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFYYCMFFD 172
Cdd:COG1007   113 LGMMLMASANDLLTLFLGLELLSLSLYVLVaFRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAAL 192
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 173 DSLEASFIIMMI----ILAGMT-KSAQIPFSSWLP-AAMAAPTPVSSLVhsSTLV-TAGVYLLIRFSNMLLDS--GYWFF 243
Cdd:COG1007   193 AAGGANSPLLLLglvlVLAGLAfKLSAVPFHMWTPdVYEGAPTPVTAFL--ATAPkIAAFAALLRLLVEAFPGlaADWQL 270
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 244 ML-IVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPI---LSFFHLLTHALFKALLFLCAGSYIHNLSD 319
Cdd:COG1007   271 LLaVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsAALFYLLAYLFMNLGAFAVILLLSRKGGE 350
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1896070403 320 FQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYS 358
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFG 389
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
196-400 7.93e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 64.33  E-value: 7.93e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 196 PFSSWLP-AAMAAPTPVsSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFF---MLIVGCLTMFMSGLAANYEFDLKSVIAL 271
Cdd:COG1008   227 PFHTWLPdAHVEAPTAG-SVLLAGVLLKMGGYGLLRFALPLFPEASAYFaplLAALGVIGIIYGALVALAQTDLKRLIAY 305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 272 STLSQLGLMMsilsMGFPILSF-------FHLLTHALFKALLFLCAGSYIHNLSDFqDVRYMGSIISVSPFTSVCFNVSS 344
Cdd:COG1008   306 SSVSHMGFVL----LGIFALNPlglqgavLQMVSHGLITAALFLLVGVLYDRTHTR-DIADLGGLAKRMPVLAALFLLAA 380
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1896070403 345 LSLCGMPFLAGFYSSDIIleLVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:COG1008   381 LASLGLPGTSGFVGEFLV--LLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFG 434
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
185-356 1.16e-10

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 64.08  E-value: 1.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 185 ILAGMtksaqIPFSSWLPAAMA-APTPVSSLVhSSTLVTAGVYLLIRFSNMLLDSGYWF--FMLIVGCLTMFMSGLAANY 261
Cdd:PRK08042  192 LLAGI-----IPLHGWVPQAHAnASAPAAALF-STVVMKIGLLGILTLSLLGGNAPLWWgvALLVLGMITAFVGGLYALM 265
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 262 EFDLKSVIALSTLSQLGLMM-------SILSMGFPIL-------SFFHLLTHALFKALLFLCAGSYIHNlSDFQDVRYMG 327
Cdd:PRK08042  266 EHNIQRLLAYHTLENIGIILlglgagvTGIALEQPALialglvgGLYHLLNHSLFKSVLFLGAGSVWFR-TGHRDIEKLG 344
                         170       180
                  ....*....|....*....|....*....
gi 1896070403 328 SIISVSPFTSVCFNVSSLSLCGMPFLAGF 356
Cdd:PRK08042  345 GIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
191-356 1.23e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 63.83  E-value: 1.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 191 KSAQIPFSSWLPAAM-AAPTPVSSlVHSSTLVTAGVYLLIRFSNMLL-DSGYWFFMLIVGCLTMFMSGLAANYEFDLKSV 268
Cdd:PRK12665  222 KAAVFPLSFWLPDSYpTAPAPVTA-VFAGLLTKVGVYAIIRTHTLLFpGGGLDTLLMVVALLTMVVGILGAIAQSDIKRL 300
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 269 IALSTLSQLGLMMSILSMGFPI-LS--FFHLLTHALFKALLFLCAGsYIHNLSDFQDVRYMGSIISVSPFTSVCFNVSSL 345
Cdd:PRK12665  301 LSFTLVSHIGYMVFGIALSTVAgLSgaIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPAL 379
                         170
                  ....*....|.
gi 1896070403 346 SLCGMPFLAGF 356
Cdd:PRK12665  380 NLGGIPPFSGF 390
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
175-401 1.61e-10

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 63.62  E-value: 1.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 175 LEASFIIMMIILAGmtKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSG----YWFFMLIVGCL 250
Cdd:PRK08676  205 LGASFLFIFIGFLA--KSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSGaaeqFSNVLIGLGIF 282
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 251 TMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPILSF---FHLLTHALFKALLFLCAGsYIHNLSDFQDVRYMG 327
Cdd:PRK08676  283 SIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHRQYRSDRFDRIF 361
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896070403 328 SIISVSPFTSVCFNVSSLSLCGMPFLAGFYSS-DIILELVSMSYVNVLIFFLFFFSTGLtsmySFRLFYYSMFGV 401
Cdd:PRK08676  362 DVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKfFILLQLGGISVWLVLAVLLLLLLAAS----SFAIFLLKAFTR 432
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
190-363 2.06e-10

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 63.03  E-value: 2.06e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 190 TKSAQIPFSSWLPAAMA-APTPVSSLVhSSTLVTAGVYLLIRFSNMLLDSGYWFF----MLIVGCLTMFMSGLAANYEFD 264
Cdd:PRK06458  226 TKVGLFPMHAWLPDAHSeAPSPVSALL-SGVLLNVALYAVLRYYILIDAAIGSDFpgrlLLIFGLLSVLVAAFFLLRQRD 304
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 265 LKSVIALSTLSQLGLMMSILSMGFPILSF---FHLLTHALFKALLFlCAGSYIHNLSDFQDVRYMGSIISVSPFTSVCFN 341
Cdd:PRK06458  305 IKRLFAYSSIEHMGLIAFALGIGGPLGIFaalLHMLNHSLTKSAIF-FASGNVLQKYGTRDINVIRGLLKVSPLTGWGLM 383
                         170       180
                  ....*....|....*....|..
gi 1896070403 342 VSSLSLCGMPFLAGFYSSDIIL 363
Cdd:PRK06458  384 LGALAIAGMPPFGVFISEFLIL 405
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
55-400 8.72e-10

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 61.11  E-value: 8.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  55 LIFSSFVIFISSVVIYYSIDymsgdeNFFRFILLVLMFVFSMVLLIF-SPNIISILLGWDGLGLISYCLVIYYHNVKSYN 133
Cdd:TIGR01972  83 VLLTALLTLLAILASWESIQ------KRVKEFYALLLLLEAGVIGVFlALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIY 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 134 AGMLTILSNRVGDVAILMSVVWMFNYGGWNYFYYCMF-FDDSLEASFIIMMIILAGMT-KSAQIPFSSWLPAAMA-APTP 210
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGGTFDLLELLnLPLPFGVQTWLFLAFFIAFAvKVPLFPLHTWLPDAHVeAPTA 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 211 VSSLVhSSTLVTAGVYLLIRFSNMLLDSGYWFFMLIVGCL---TMFMSGLAANYEFDLKSVIALSTLSQLGL-MMSILSM 286
Cdd:TIGR01972 237 GSVIL-AGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAALgviAIIYGALIALAQTDIKRLIAYSSISHMGFvLLGIFSF 315
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 287 GFPILS--FFHLLTHALFKALLFLCAGsYIHNLSDFQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFYSSDIIle 364
Cdd:TIGR01972 316 NELGISgaVFQMISHGLITAALFLLVG-VLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLI-- 392
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1896070403 365 LVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:TIGR01972 393 LLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFG 428
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
100-363 1.09e-09

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 61.06  E-value: 1.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 100 IFSPNIISILLGWDGLGLISYCLVIYYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGwnyfyyCMFFDDSLEASF 179
Cdd:PRK12668  110 VFAGDLLTLFVFWELMAFTSTFLVWARGTKAAVRAGFRYLLVHVLGGVLLLAGILLHYAETG------SFAFGAIAGLGG 183
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 180 IIMMIILAG-MTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIR-FSNMLLdsgywffmLIVGCLTMFMSG- 256
Cdd:PRK12668  184 TAAWLILIGfGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARaFPGTEL--------LIYIGAAMAVYGv 255
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 257 LAANYEFDLKSVIALSTLSQLGLMMSILSMGFPIL---SFFHLLTHALFKALLFLCAGSYIHNLSDfQDVRYMGSIISVS 333
Cdd:PRK12668  256 FFALLENDLRRLLSYHIVSQVGYMVAGIGIGTALAingAVAHAFNHILYKGLLFMSAGAVLYRTGT-EKLTELGGLYRSM 334
                         250       260       270
                  ....*....|....*....|....*....|
gi 1896070403 334 PFTSVCFNVSSLSLCGMPFLAGFYSSDIIL 363
Cdd:PRK12668  335 PLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
179-400 1.92e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 59.96  E-value: 1.92e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 179 FIIMMIILAgmTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWF---FMLIVGCLTMFMS 255
Cdd:PRK07691  212 AILFLFVFA--TKAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFthyLILILALLTIIFG 289
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 256 GLAANYEFDLKSVIALSTLSQLGLMMSILSMGFP---ILSFFHLLTHALFKALLFLCAGSYIHnLSDFQDVRYMGSIISV 332
Cdd:PRK07691  290 VIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTEsgmIGAIYYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKR 368
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1896070403 333 SPFTSVCFNVSSLSLCGMPFLAGFYSSDIILElVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:PRK07691  369 YPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE-GTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFWG 435
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
18-357 1.20e-07

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 54.44  E-value: 1.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  18 FFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSgDENFFRFILLVLMFVFSMV 97
Cdd:PRK05777   39 TLAVLALLLALVALLFVLGAAGGGTAFGGMLVVDGFALFLKGLILLASLLALLLARPYLE-DRGRGEFYLLVLFALLGMM 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  98 LLIFSPNIISILLGWDGLGLISYCLVIY-YHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYGGWNYFYYcmfFDDSLE 176
Cdd:PRK05777  118 VMVSANDLLTLFLGLELLSLPLYALAALrRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAG---IAKALA 194
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 177 ASFIIMMIILAGMT--------KSAQIPFSSWLPAAM-AAPTPVSSLVHSSTLVtAGVYLLIRFSNMLLDSGYWF---FM 244
Cdd:PRK05777  195 DGSGNSLLLLFGLVfllvglafKLSAVPFHMWTPDVYeGAPTPVTAFLATAPKI-AAFAVLLRLLVVAFGGLSEDwqqVL 273
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 245 LIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGFPI---LSFFHLLTHALFKALLFLC------AGSYIH 315
Cdd:PRK05777  274 AIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysAVLFYLLAYLFMTLGAFGVisllrrKGGEAE 353
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1896070403 316 NLSDFQdvrymgSIISVSPFTSVCFNVSSLSLCGMPFLAGFY 357
Cdd:PRK05777  354 SISDFA------GLSKRSPLLAAVMTIFMLSLAGIPPTAGFW 389
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
195-400 3.73e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 52.90  E-value: 3.73e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 195 IPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFS-NMLLDSGYWF--FMLIVGCLTMFMSGLAANYEFDLKSVIAL 271
Cdd:PRK05846  228 FPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSlPLFPDASHEFapIIITLGVIAIIYGALVALAQTDIKKLIAY 307
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 272 StlsqlglmmSILSMGFPILSFFHL------------LTHALFKALLFLCAGSYIHNLSDfQDVRYMGSIISVSPFTSVC 339
Cdd:PRK05846  308 S---------SISHMGFVTLGIFAGnqlgiqgaifqmISHGLSSAALFLLVGVLYDRLHT-RDIADYGGLAKVMPVLAAF 377
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896070403 340 FNVSSLSLCGMPFLAGFYSSdiILELVSMSYVNVLIFFLFFFSTGLTSMYSFRLFYYSMFG 400
Cdd:PRK05846  378 FLFFAMASLGLPGTSGFVGE--FLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFG 436
ndhB CHL00049
NADH dehydrogenase subunit 2
3-357 3.57e-05

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 46.54  E-value: 3.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   3 YVFFFSLFISSLLMFFFSLMFLILDLVFFLEWEIFSLNGSSI-----VMTLIFDW----------------MSLIFSSFV 61
Cdd:CHL00049    9 LLFDGSFIFPECILIFGLILLLMIDLTSDQKDIPWLYFISSTslvmsITALLFQWreepmisfsgnfqtnnFNEIFQFLI 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  62 IFISSVVIYYSIDYMSGDE-NFFRFILLVLMFVFSMVLLIFSPNIISILLGWDGLGLISYCLVIYY-HNVKSYNAGMLTI 139
Cdd:CHL00049   89 LLCSTLCIPLSVEYIECTEmAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTkKDVRSNEATMKYL 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 140 LSNRVGDVAILMSVVWMFNYGG-----WNYFYYCMFFD-DSLEASFIIMMIILAGMT-KSAQIPFSSWLPAAM-AAPTPV 211
Cdd:CHL00049  169 LMGGASSSILVYGFSWLYGLSGgeielQEIVNGLINTQmYNSPGISIALIFITVGIGfKLSLAPFHQWTPDVYeGSPTPV 248
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 212 SSLVhSSTLVTAGVYLLIRFSNMLLD--SGYWFFML-IVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSMGF 288
Cdd:CHL00049  249 VAFL-SVTSKVAASALATRIFDIPFYfsSNEWHLLLeILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGD 327
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1896070403 289 PILSFFHLLTHALFKALLFLCAGSYIHNLS---DFQDVRYMGSIISVSPFTSVCFNVSSLSLCGMPFLAGFY 357
Cdd:CHL00049  328 SNDGYASMITYMLFYIFMNLGTFACIVLFGlrtGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFF 399
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
9-312 1.15e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 45.17  E-value: 1.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   9 LFISSLLMFFFSLMFLILDLVffleweifslnGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFILL 88
Cdd:PRK06459    9 FLISILLSIFNKKASYILTMI-----------SSIILLITSIYEYNGVLSFFSIISTIVWILASLYSIEYDHYGKWLSSL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  89 VLMFVFSMVLLIFSPNIISILLGWDGLGLISYcLVIYYHNVKSYNAGMLTILSnRVGDVAILMSVVWMFNYGGWNYFYYc 168
Cdd:PRK06459   78 YILTILGMAIVLTSDNYLLFLAGWEIMTIPSY-VAIALTKKNKRPAFVFMAFG-ELSTVLILAGFAWAFIISGTTNFSY- 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 169 mffddsLEASFIIMMIILAGMTKSAQIPF--SSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFF--- 243
Cdd:PRK06459  155 ------LPSPVPLILASFGFIIKMGMMPFlvSEWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIPIGYFglt 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 244 MLIVGCLTMFMSGLAANYEFDLKSVIALSTLSQLGLMMSILSM------------GFPILS-FFHLLTHALFKALLFLCA 310
Cdd:PRK06459  229 ILAIGAFSILFGALYAYVSENVKGLLAFSTIENNGAILVALGLymvtkqlitsieHFSLITvILYSFAHSVAKTGLFLSS 308

                  ..
gi 1896070403 311 GS 312
Cdd:PRK06459  309 GL 310
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
37-85 2.63e-04

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 38.95  E-value: 2.63e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1896070403  37 FSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRF 85
Cdd:pfam00662   2 LSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARF 50
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
181-358 6.48e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.41  E-value: 6.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 181 IMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFMLIVGCLTMFMSGLA-- 258
Cdd:PRK12662  212 VLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDVFKANFVFTTLPFNNVFMILAALAiv 291
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 259 -----ANYEFDLKSVIALSTLSQLG---LMMSILSMGFPILSFFHLLTHALFKALLFLCAGSYIHNLsDFQDVRYMGSII 330
Cdd:PRK12662  292 fgsvlAILSKDIKRIFAYSSISHIGyiiLAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHF-GTTKLEDCLNLW 370
                         170       180
                  ....*....|....*....|....*...
gi 1896070403 331 SVSPFTSVCFNVSSLSLCGMPFLAGFYS 358
Cdd:PRK12662  371 KSMPKITLAFVLLSLSLIGMPPTSGFVA 398
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
8-282 1.96e-03

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 40.88  E-value: 1.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403   8 SLFISSLLMFFFSLMFLILDLVFFLEWEIFSLNGSSIVMTLIFDWMSLIFSSFVIFISSVVIYYSIDYMSGDENFFRFIL 87
Cdd:MTH00014   15 PLIKYPWSWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASFKIFQNNKAPKTFMT 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403  88 LVLMFVFSMVLLIFSPNIISILLgWDGLGLISYCLVI--YYHNVKSYNAGMLTILSNRVGDVAILMSVVWMFNYG-GWNY 164
Cdd:MTH00014   95 NILILNLILLLTFSASNLLMFYI-FFEASLIPTLFLIlgWGYQPERLQASFYLMIYTVTASLPLLMSILLIFYTNnSLSM 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896070403 165 FYYCMFFDDSLEASFIIMMIILAGMTKSAQIPFSSWLPAAMAAPTPVSSLVHSSTLVTAGVYLLIRFSNMLLDSGYWFFM 244
Cdd:MTH00014  174 LMSSMEPPSIYLMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSA 253
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1896070403 245 LIVGCLTM--FMSGLAANYEFDLKSVIALSTLSQLGLMMS 282
Cdd:MTH00014  254 PFSSISLVgaVITSLICIRQPDLKSLIAYSSVGHMGLMTA 293
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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