NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1904408579|gb|QNR61598|]
View 

hypothetical protein GZ17G11_29 [uncultured archaeon GZfos17G11]

Protein Classification

DUF4258 domain-containing protein( domain architecture ID 10624063)

DUF4258 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4258 pfam14076
Domain of unknown function (DUF4258); This family of proteins is functionally uncharacterized. ...
 18-90 3.40e-15

Domain of unknown function (DUF4258); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 95 and 124 amino acids in length. Structural models show this family adopts a structure found in bacterial toxins, suggesting this family are the toxins in a toxin-antitoxin system.


:

Pssm-ID: 464082  Cd Length: 70  Bit Score: 64.27  E-value: 3.40e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1904408579  18 MTDHADEELANDEILDKDLLHSVLHGEIIEDYPDDKPFPSClVYGKDQKERHIHSVWAYSVEHdiAIVITGYI 90
Cdd:pfam14076   1 FSNHALERMAERGISEADIEEALLNGEIIEDYPDDKPGPSC-ILGKTIDGRPLHVVVAIDEDP--LVIITVYR 70
 
Name Accession Description Interval E-value
DUF4258 pfam14076
Domain of unknown function (DUF4258); This family of proteins is functionally uncharacterized. ...
 18-90 3.40e-15

Domain of unknown function (DUF4258); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 95 and 124 amino acids in length. Structural models show this family adopts a structure found in bacterial toxins, suggesting this family are the toxins in a toxin-antitoxin system.


Pssm-ID: 464082  Cd Length: 70  Bit Score: 64.27  E-value: 3.40e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1904408579  18 MTDHADEELANDEILDKDLLHSVLHGEIIEDYPDDKPFPSClVYGKDQKERHIHSVWAYSVEHdiAIVITGYI 90
Cdd:pfam14076   1 FSNHALERMAERGISEADIEEALLNGEIIEDYPDDKPGPSC-ILGKTIDGRPLHVVVAIDEDP--LVIITVYR 70
 
Name Accession Description Interval E-value
DUF4258 pfam14076
Domain of unknown function (DUF4258); This family of proteins is functionally uncharacterized. ...
 18-90 3.40e-15

Domain of unknown function (DUF4258); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 95 and 124 amino acids in length. Structural models show this family adopts a structure found in bacterial toxins, suggesting this family are the toxins in a toxin-antitoxin system.


Pssm-ID: 464082  Cd Length: 70  Bit Score: 64.27  E-value: 3.40e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1904408579  18 MTDHADEELANDEILDKDLLHSVLHGEIIEDYPDDKPFPSClVYGKDQKERHIHSVWAYSVEHdiAIVITGYI 90
Cdd:pfam14076   1 FSNHALERMAERGISEADIEEALLNGEIIEDYPDDKPGPSC-ILGKTIDGRPLHVVVAIDEDP--LVIITVYR 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH