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Conserved domains on  [gi|1910804114|gb|QOD97361|]
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ATP synthase F0 subunit 6 (mitochondrion) [Nestor notabilis]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009577)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 2.99e-108

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 177190  Cd Length: 227  Bit Score: 310.65  E-value: 2.99e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   1 MTLTFFDQFSSPYLLGIPLVLLSLLFPSMLLPMPNNRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLL 80
Cdd:MTH00132    1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  81 LTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1910804114 161 LTANLTAGHLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 2.99e-108

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 310.65  E-value: 2.99e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   1 MTLTFFDQFSSPYLLGIPLVLLSLLFPSMLLPMPNNRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLL 80
Cdd:MTH00132    1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  81 LTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1910804114 161 LTANLTAGHLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-227 9.70e-45

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 148.89  E-value: 9.70e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   6 FDQFSSP--YLLGIPLVLLSLLFPS---MLLPMPNNRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLL 80
Cdd:TIGR01131   2 FSQFDISpiTLFSLTLLSLILLLSLlifLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  81 LTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:TIGR01131  82 LISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVR 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1910804114 161 LTANLTAGHLLIQLISTATITLlpLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:TIGR01131 162 LFANISAGHLLLTLLSGLLFSL--MSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 9.62e-35

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 120.97  E-value: 9.62e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  66 GHKWALILTSLIMLLLTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMI 145
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1910804114 146 ETISLLIRPLALGVRLTANLTAGHLLIQLISTATITllpLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQ 224
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPS---LLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
90-224 7.76e-30

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 110.27  E-value: 7.76e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  90 PYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTIS-LGHLLPEGTPTPLIPALIMIETISLLIRPLALGVRLTANLTAG 168
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAG 160

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1910804114 169 HLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQ 224
Cdd:pfam00119 161 HLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 61-225 2.78e-19

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 82.43  E-value: 2.78e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  61 PLNKPGHKWALILTSLIMLLLTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTIS-LGHLLPEGTPtPLI 139
Cdd:COG0356    49 TIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLKHLFFPPFP-WLA 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114 140 PALIMIETISLLIRPLALGVRLTANLTAGHLLIqlistATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLL 219
Cdd:COG0356   128 PLMLPIEIISELARPLSLSLRLFGNMFAGHIIL-----LLLAGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLT 202


                  ....*.
gi 1910804114 220 SLYLQE 225
Cdd:COG0356   203 AVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 2.99e-108

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 310.65  E-value: 2.99e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   1 MTLTFFDQFSSPYLLGIPLVLLSLLFPSMLLPMPNNRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLL 80
Cdd:MTH00132    1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  81 LTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1910804114 161 LTANLTAGHLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-227 7.57e-104

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 299.43  E-value: 7.57e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   1 MTLTFFDQFSSPYLLGIPLVLLSLLFPSMLLPMPNNRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLL 80
Cdd:MTH00120    1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  81 LTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00120   81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1910804114 161 LTANLTAGHLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00120  161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-227 6.19e-103

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 297.26  E-value: 6.19e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   1 MTLTFFDQFSSPYLLGIPLVLLSLLFPSMLLPMPNNRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLL 80
Cdd:MTH00073    1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  81 LTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00073   81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1910804114 161 LTANLTAGHLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00073  161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-226 4.73e-79

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 236.38  E-value: 4.73e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   1 MTLTFFDQFSSPYLLGIPLVLLSLLFPSMLLPMPNNRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLL 80
Cdd:MTH00179    1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  81 LTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00179   81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1910804114 161 LTANLTAGHLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQEN 226
Cdd:MTH00179  161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 9.18e-77

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 230.61  E-value: 9.18e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   1 MTLTFFDQFSSPYLLGIPLVLLSLLFPSMLLPMPNnRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLL 80
Cdd:MTH00101    1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPN-RLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  81 LTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:MTH00101   80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1910804114 161 LTANLTAGHLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQEN 226
Cdd:MTH00101  160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDN 225
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 6-227 7.84e-48

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 157.06  E-value: 7.84e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   6 FDQFSSPYLLGIPLVLLSLLFP-SMLLPMPNNRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLLLTIN 84
Cdd:MTH00035    8 FGQFSPDTILFIPLTLLSSVIAlSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILILSIN 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  85 LLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVRLTAN 164
Cdd:MTH00035   88 VLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGLRLAAN 167

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1910804114 165 LTAGHLLIQLISTAtITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00035  168 LTAGHLLIFLLSTA-IWELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-227 9.70e-45

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 148.89  E-value: 9.70e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   6 FDQFSSP--YLLGIPLVLLSLLFPS---MLLPMPNNRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLL 80
Cdd:TIGR01131   2 FSQFDISpiTLFSLTLLSLILLLSLlifLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  81 LTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVR 160
Cdd:TIGR01131  82 LISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVR 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1910804114 161 LTANLTAGHLLIQLISTATITLlpLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:TIGR01131 162 LFANISAGHLLLTLLSGLLFSL--MSSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 22-225 6.04e-40

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 136.45  E-value: 6.04e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  22 LSLLFPSMLLPM---PNNRWLT-NRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLLLTINLLGLLPYTFTPTT 97
Cdd:MTH00157   17 LSLNWLSTFLGLlfiPSSFWLIpSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFILFNNFLGLFPYIFTSTS 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  98 QLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVRLTANLTAGHLLIQLIST 177
Cdd:MTH00157   97 HLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIAGHLLLTLLGN 176

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1910804114 178 aTITLLPLMPLVSSLTMAILLLltILEVAVAMIQAYVFVLLLSLYLQE 225
Cdd:MTH00157  177 -TGPSLSSMILSILILIQILLL--ILESAVAIIQSYVFSVLSTLYSSE 221
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 9.59e-37

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 128.61  E-value: 9.59e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   1 MTLTFFDQFSSPYLLGIPLVLLSLLFP-SMLLPMPNNRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHK-WALILTSLIM 78
Cdd:MTH00176    1 MLVDLFSSFDPPNKNIFSMISLSWITLlLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILgSASIIISLFI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  79 LLLTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALG 158
Cdd:MTH00176   81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1910804114 159 VRLTANLTAGHLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQEN 226
Cdd:MTH00176  161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEH 228
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 4-225 1.73e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 125.36  E-value: 1.73e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   4 TFFDQFSSPYLLGIPLVLLSLLFPSMLLPMPNnRWLTNRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLLLTI 83
Cdd:MTH00173    7 SSFDDHNSSFSSLSFLMWLLSLMSLFFFSSSV-WVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  84 NLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVRLTA 163
Cdd:MTH00173   86 NLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLA 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1910804114 164 NLTAGHLLIQLISTATITLLPLMPLVSSL-TMAILLLLTILEVAVAMIQAYVFVLLLSLYLQE 225
Cdd:MTH00173  166 NISAGHIVLTLIGNYLSSSLFSSSVVSLLlVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 9.62e-35

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 120.97  E-value: 9.62e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  66 GHKWALILTSLIMLLLTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMI 145
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1910804114 146 ETISLLIRPLALGVRLTANLTAGHLLIQLISTATITllpLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQ 224
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPS---LLSSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
90-224 7.76e-30

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 110.27  E-value: 7.76e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  90 PYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTIS-LGHLLPEGTPTPLIPALIMIETISLLIRPLALGVRLTANLTAG 168
Cdd:pfam00119  81 PGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAG 160

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1910804114 169 HLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQ 224
Cdd:pfam00119 161 HLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 6-222 2.86e-28

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 106.74  E-value: 2.86e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   6 FDQFSSPYLLGIPLVLLSLLFPSMLLPMPNNRWLT-NRLTTLQLWTIHTITKQLLMPLNKPGHKWALILTSLIMLLLTIN 84
Cdd:MTH00005    9 FDPATNSLFNNLSSTAFWAFNFSIILLLSSSFWITpNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  85 LLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVRLTAN 164
Cdd:MTH00005   89 LSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAAN 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1910804114 165 LTAGHLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLY 222
Cdd:MTH00005  169 MSAGHIVLSLIGIYAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLY 226
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 1-227 5.43e-26

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 100.85  E-value: 5.43e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   1 MTLTFFDQFSSPYLLGIPLVLLSLLFP----SM---------LLPMPNNRWLTNRLTTLqLWTIHTITKQLLMP-LNKPG 66
Cdd:MTH00175    1 MLAAYFDQFNIIRLITIQAFLGDWLVTftnsSMmmvlaviifWLLLKGDKLIPNRWQSI-MELIYLNIRSVVHDnLGKSG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  67 HKWALILTSLIMLLLTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIE 146
Cdd:MTH00175   80 QKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIE 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114 147 TISLLIRPLALGVRLTANLTAGHLLIQLISTATITLLPL-MPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQE 225
Cdd:MTH00175  160 TLSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNgLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGD 239


                  ..
gi 1910804114 226 NI 227
Cdd:MTH00175  240 TI 241
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-227 3.20e-25

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 98.57  E-value: 3.20e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114   1 MTLTFFDQFSSPYLLGI--PLVLLSLLFPSMLLPMPNNRWLTNRLTTLQLWTI---HTITKQLLMPlnkPGHKWALILTS 75
Cdd:MTH00172    1 MSSSYFDQFNIVWLIGLtnSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYnhfHGVVKDNLGN---EGLKYFPFIIS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  76 LIMLLLTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPL 155
Cdd:MTH00172   78 LFFFIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAI 157

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1910804114 156 ALGVRLTANLTAGHLLIQLISTATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00172  158 SLGVRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTI 229
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 61-225 2.78e-19

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 82.43  E-value: 2.78e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  61 PLNKPGHKWALILTSLIMLLLTINLLGLLPYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTIS-LGHLLPEGTPtPLI 139
Cdd:COG0356    49 TIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLKHLFFPPFP-WLA 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114 140 PALIMIETISLLIRPLALGVRLTANLTAGHLLIqlistATITLLPLMPLVSSLTMAILLLLTILEVAVAMIQAYVFVLLL 219
Cdd:COG0356   128 PLMLPIEIISELARPLSLSLRLFGNMFAGHIIL-----LLLAGLAPFLLLGVLSLLLPVAWTAFELLVGFLQAYIFTMLT 202


                  ....*.
gi 1910804114 220 SLYLQE 225
Cdd:COG0356   203 AVYISL 208
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 24-227 1.20e-18

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 81.52  E-value: 1.20e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  24 LLFPSMLLPMPNNRWLTNR-LTTLQLWTIHTITKQLLMPLNKPGHKWALILtSLIMLLLTINLLGLLPYTFTPTTQLSMN 102
Cdd:MTH00174   45 FLFYTIGAKGNNNTLVPNRiLVGLELIYSHFYTVLKDNLGNKGGNYLAFVL-SLFILILFGNGLGLFPYVFTPTVHMVIT 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114 103 MALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVRLTANLTAGHLLIQLISTATITL 182
Cdd:MTH00174  124 LGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKM 203

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1910804114 183 LPLMPLVSSLT-MAILLLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00174  204 INTGILIGSFVpFAILIFVTILEMAVAIIQAYVFTLLTIVYLRDTV 249
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 64-225 9.28e-18

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 78.68  E-value: 9.28e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  64 KPGHKWALILTSLIMLLLTINLLGLLP-YTFTPTTQLSMNMALAIPLWLATLLMGLRNQptiSLGHLLPEGTPTPlIPAL 142
Cdd:PRK05815   67 GKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLL 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114 143 IMIETISLLIRPLALGVRLTANLTAGHLLIQLISTATITLLPLMPLVSSLTMAilllLTILEVAVAMIQAYVFVLLLSLY 222
Cdd:PRK05815  143 LPIEIISEFSRPISLSLRLFGNMLAGELILALIALLGGAGLLLALAPLILPVA----WTIFEIFVGTLQAYIFMMLTIVY 218


                  ...
gi 1910804114 223 LQE 225
Cdd:PRK05815  219 ISM 221
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 90-223 8.79e-13

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 66.30  E-value: 8.79e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  90 PYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETISLLIRPLALGVRLTANLTAGH 169
Cdd:PRK13419  191 PYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHLTGGTHWSLWIIMIPIEFIGLFTKPFALTVRLFANMTAGH 270

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1910804114 170 LLI-QLISTATITLLPLMPLVSSLTMAILLLLtiLEVAVAMIQAYVFVLLLSLYL 223
Cdd:PRK13419  271 IVIlSLIFISFILKSYIVAVAVSVPFAIFIYL--LELFVAFLQAYIFTMLSALFI 323
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 90-225 3.71e-11

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 59.99  E-value: 3.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  90 PYTFTPTTQLSMNMALAIPLWLATLLMGLRNQPTISlgHLLPEGTPTPLIP-ALIMIETISLLIRPLALGVRLTANLTAG 168
Cdd:MTH00087   72 PYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKFS--VYLSKGSDSFLKTfSMLFVEIVSELSRPLALTLRLTVNLMVG 149

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1910804114 169 HLLIQLISTatitllplmplVSSLTMAILLLLTILEVAVAMIQAYVFVLLLSLYLQE 225
Cdd:MTH00087  150 HLISSLLNF-----------LGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYLNE 195
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 94-223 2.18e-09

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 56.44  E-value: 2.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1910804114  94 TPTTQLSMNMALAIPLWLATLLMGLRNQPTISLGHLLPEGTPTPLIPALIMIETI-SLLIRPLALGVRLTANLTAGHLLI 172
Cdd:PRK13417  217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVII 296

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1910804114 173 -QLISTATITLLPLMPLVSSLTMAillLLTILEVAVAMIQAYVFVLLLSLYL 223
Cdd:PRK13417  297 lALMGFIFQFQSWGIVPVSVIGSG---LIYVLEIFVAFLQAYIFVLLTSLFV 345
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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