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Conserved domains on  [gi|1916859010|gb|QOL00772|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Xya japonica]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 2.19e-94

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 291.29  E-value: 2.19e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   1 MLSLMSIMLFMIPISFFYKNWWLYNFLMIMIKVFFLKWIYISWDDTGQSLIFGIDSVSYWLIVLSFWISGLMTMASGKNF 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  81 FKNMLENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMYM-FYTLLASLPLLLGFIY 159
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLlFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 160 IYKNNNYLYYPLMSWIDCSDLdLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILIS 239
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNF-LWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFS 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 240 FLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I*********FFL** 319
Cdd:MTH00163  240 KLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLAN 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 320 *******SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMFLSFFSAAYSLFLF 399
Cdd:MTH00163  320 IIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLY 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1916859010 400 SFSQHGSDFTEDYSSEMINFREYQVLFMHWIPFNFLFLSEEYFYF 444
Cdd:MTH00163  400 SYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 2.19e-94

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 291.29  E-value: 2.19e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   1 MLSLMSIMLFMIPISFFYKNWWLYNFLMIMIKVFFLKWIYISWDDTGQSLIFGIDSVSYWLIVLSFWISGLMTMASGKNF 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  81 FKNMLENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMYM-FYTLLASLPLLLGFIY 159
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLlFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 160 IYKNNNYLYYPLMSWIDCSDLdLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILIS 239
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNF-LWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFS 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 240 FLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I*********FFL** 319
Cdd:MTH00163  240 KLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLAN 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 320 *******SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMFLSFFSAAYSLFLF 399
Cdd:MTH00163  320 IIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLY 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1916859010 400 SFSQHGSDFTEDYSSEMINFREYQVLFMHWIPFNFLFLSEEYFYF 444
Cdd:MTH00163  400 SYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 106-392 4.73e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.93  E-value: 4.73e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 106 SLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMYMF-YTLLASLPLLLGFIYIYKNNNYLYYPLMS-----WIDCSD 179
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFlLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 180 LDLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILISFLGTYMNKYLIIFGLVGGGS 259
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 260 RSF**L**IDVKSLIPYSS***MSL*******LS**G********I*********FFL*********SRWELINKGGILI 339
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1916859010 340 F-PSSTFWWFLLCSSNMAAPISLNLLGEISILNSIggyYSGGMMLLMFLSFFSA 392
Cdd:pfam00361 241 TmPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA---VAASWIFLVLAGVVGS 291
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 53-284 1.57e-20

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 93.85  E-value: 1.57e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  53 GIDSVSYWLIVLSFWISGLMTMASGKNFFKNmlENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGY 132
Cdd:TIGR01972  74 GVDGISLLLVLLTALLTLLAILASWESIQKR--VKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 133 KPELSQAGMYMFYTLLASLPLLLGFIYIYknnnYLYYPLMSWIDCSDLDL-------IYFSMIMAFLVKLPMYMLHLWLP 205
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLY----FLGGGTFDLLELLNLPLpfgvqtwLFLAFFIAFAVKVPLFPLHTWLP 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 206 KAHVEAPIAGSMILAGILLTLGGYGLTRFMI-LISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL 284
Cdd:TIGR01972 228 DAHVEAPTAGSVILAGVLLKMGTYGFLRFNLpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGF 307
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-278 4.40e-18

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 86.29  E-value: 4.40e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  49 SLIFGIDSVSYWLIVLSFWISGLMTMASGKNFFKNmlENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLIL 128
Cdd:COG1008    75 SYHLGVDGISLPLVLLTALLTPLAILASWNEIKKR--PKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIG 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 129 GWGYKPELSQAGMYMFYTLLASLPLLLGFIYIYknnNYLYYPLMSWIDCSDLDL-------IYFSMIMAFLVKLPMYMLH 201
Cdd:COG1008   153 IWGGERRIYAAIKFFLYTLAGSLLMLVAILALY---FLAGALTFDIAELAAAPLpltaqllLFLAFFIAFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 202 LWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILISFLGT-YMNKYLIIFGLVG---GgsrSF**L**IDVKSLIPYS 277
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEASaYFAPLLAALGVIGiiyG---ALVALAQTDLKRLIAYS 306


                  .
gi 1916859010 278 S 278
Cdd:COG1008   307 S 307
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-444 2.19e-94

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 291.29  E-value: 2.19e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   1 MLSLMSIMLFMIPISFFYKNWWLYNFLMIMIKVFFLKWIYISWDDTGQSLIFGIDSVSYWLIVLSFWISGLMTMASGKNF 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  81 FKNMLENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMYM-FYTLLASLPLLLGFIY 159
Cdd:MTH00163   81 KKNNYSNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLlFYTLFASLPLLVGIFY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 160 IYKNNNYLYYPLMSWIDCSDLdLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILIS 239
Cdd:MTH00163  161 LYNNSGSLSFFLLNFFGSLNF-LWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFS 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 240 FLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I*********FFL** 319
Cdd:MTH00163  240 KLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLAN 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 320 *******SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMFLSFFSAAYSLFLF 399
Cdd:MTH00163  320 IIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLY 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 1916859010 400 SFSQHGSDFTEDYSSEMINFREYQVLFMHWIPFNFLFLSEEYFYF 444
Cdd:MTH00163  400 SYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFML 444
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 49-442 6.19e-76

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 242.82  E-value: 6.19e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  49 SLIFGIDSVSYWLIVLSFWISGLMTMASGKNFFKNMLENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLIL 128
Cdd:MTH00150   17 SELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLLCLILVLAFSVSSLLMFYFFFEASLIPTLLLIL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 129 GWGYKPELSQAGMYMF-YTLLASLPLLLGFIYIYKNNNYLYYPLMSWIDCSDLD--LIYFSMIMAFLVKLPMYMLHLWLP 205
Cdd:MTH00150   97 GWGYQPERLQAGMYMMlYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSmgLWGLLVFLAFLVKLPMYPFHLWLP 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 206 KAHVEAPIAGSMILAGILLTLGGYGLTRFMILISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL* 285
Cdd:MTH00150  177 KAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLV 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 286 ******LS**G********I*********FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLG 365
Cdd:MTH00150  257 LAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLS 336

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1916859010 366 EISILNSIGGYYSGGMMLLMFLSFFSAAYSLFLFSFSQHGSDFTEDYSSEMINFREYQVLFMHWIPFNFLFLSEEYF 442
Cdd:MTH00150  337 EIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLL 413
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-444 8.09e-75

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 241.04  E-value: 8.09e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   1 MLSLMSIMLFMIPISFFYKNWWLY-NFLMIMIKVFFLKWIYISWDDTGQSLIFGIDSVSYWLIVLSFWISGLMTMASGKN 79
Cdd:MTH00205    1 MSIFGVFSLLIILFVLKFKDWSFFsNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  80 FFKNMLENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMYM-FYTLLASLPLLLGFI 158
Cdd:MTH00205   81 FKSNKNSKLFTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMmMYTLCASLPLLIGLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 159 YIYKNNNYLYYPLMSWIDCSD--LDLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMI 236
Cdd:MTH00205  161 FLNSLNFSLSMFFNFPLNFSDfyLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 237 LISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I*********FF 316
Cdd:MTH00205  241 MLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 317 L*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMFLSFFSAAYSL 396
Cdd:MTH00205  321 LANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSL 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*...
gi 1916859010 397 FLFSFSQHGSDFTEDYSSEMINFREYQVLFMHWIPFNFLFLSEEYFYF 444
Cdd:MTH00205  401 YLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFIC 448
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-440 1.76e-72

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 235.02  E-value: 1.76e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   1 MLSLMSIMLFMIPISFFYKNWWLYNFLMIMIKVFFLKWIYISWDDTGQSLI---FGIDSVSYWLIVLSFWISGLMTMASG 77
Cdd:MTH00014    1 MLKLIMPLISLLLLPLIKYPWSWALTFSTLLLLSLFTLLNLYPMSAPYSMFtesLSSDMLSAPLITLTLWITALMILASF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  78 KNFFKNMLENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMY-MFYTLLASLPLLLG 156
Cdd:MTH00014   81 KIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYlMIYTVTASLPLLMS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 157 FIYIYKNNNYLYYPLMSWIDCSD--LDLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRF 234
Cdd:MTH00014  161 ILLIFYTNNSLSMLMSSMEPPSIylMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 235 MILISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I********* 314
Cdd:MTH00014  241 SSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSAL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 315 FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMFLSFFSAAY 394
Cdd:MTH00014  321 FALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAY 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 1916859010 395 SLFLFSFSQHGSDFTEDYSSEMINFREYQVLFMHWIPFNFLFLSEE 440
Cdd:MTH00014  401 SLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPD 446
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-438 1.25e-58

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 199.05  E-value: 1.25e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   1 MLSLMSIMLFMIPISFFYKNWWLYNFLMIMIKVFFLKWIYISWDDTGQ-----SLIFGIDSVSYWLIVLSFWISGLMTMA 75
Cdd:MTH00044    1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLNNHWSSswhnlSLSLATDSLSSPLIILSCWLAPLSLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  76 SGKNFFKN--MLENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMY-MFYTLLASLP 152
Cdd:MTH00044   81 SINHLSNNspNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYfLFYTLFGSLP 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 153 LLLGFIYIYKNNNYLYYPLMSWIDCSDLDLIYFSM-----IMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLG 227
Cdd:MTH00044  161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIwwifcILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 228 GYGLTRFMILISFLGT-YMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I* 306
Cdd:MTH00044  241 GYGLIRLINLFSLPSAnNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 307 ********FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMF 386
Cdd:MTH00044  321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1916859010 387 LSFFSAAYSLFLFSFSQHGSDFTEDYSSEMINFREYQVLFMHWIPFNFLFLS 438
Cdd:MTH00044  401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIIN 452
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-442 6.36e-55

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 188.99  E-value: 6.36e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   1 MLSLMSIMLFMIPISFFYK-NWWLYNFLMIMIKVFFLKWIYISWDDT--GQSLIFGIDSVSYWLIVLSFWISGLMTMASG 77
Cdd:MTH00206    1 KILIPLIMLLLMTILSKKKwLWRSTTFFSFLIALLFLLWFKWSSEVGwsFSNLYLSYDPLSSPLVILSCWLLPLMFLASQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  78 KNFFKNMLENYFTLVVLLLLLILILC--FSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMY-MFYTLLASLPLL 154
Cdd:MTH00206   81 NHMKNEPINRQRIYITLLIVLQLFLIlfFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYfLFYTLIGSLPLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 155 LGFIYIYKNNNYLYYPLMSWIDCSD--LDLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLT 232
Cdd:MTH00206  161 IALLFLQNSLGSLSLYILYFSKLTTwnNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 233 RFMILISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I******* 312
Cdd:MTH00206  241 RIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSS 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 313 **FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMFLSFFSA 392
Cdd:MTH00206  321 ALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTA 400

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|
gi 1916859010 393 AYSLFLFSFSQHGSDFTEDYSSEMINFREYQVLFMHWIPFNFLFLSEEYF 442
Cdd:MTH00206  401 IYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 4-431 3.83e-51

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 178.85  E-value: 3.83e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   4 LMSIMLfmIPISFFYKN---WWLYNFLMIMIKVFFLKWIYISWD-DTGQSLIFGIDSVSYWLIVLSFWISGLMTMASGKN 79
Cdd:MTH00124    6 LPTIML--IPTTLLSKPkflWTNTTTYSLLIALLSLQWLKPPYYpTKNLTQWLGIDQISAPLLVLSCWLLPLMILASQNH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  80 FFKNMLENY--FTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMY-MFYTLLASLPLLLG 156
Cdd:MTH00124   84 LQHEPLQRKrtFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYfLFYTLISSLPLLIA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 157 FIYIYKNNNYLYYPLM---------SWIDcsdlDLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLG 227
Cdd:MTH00124  164 ILYLHNQTGTLSLPMLqlthptltnSWTN----LLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 228 GYGLTRFMILISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I** 307
Cdd:MTH00124  240 GYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 308 *******FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMFL 387
Cdd:MTH00124  320 GLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLA 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 1916859010 388 SFFSAAYSLFLFSFSQHGSDFTEDYSSEMINFREYQVLFMHWIP 431
Cdd:MTH00124  400 TLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIP 443
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-440 1.29e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 167.02  E-value: 1.29e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   1 MLSLMSIMLFMIPISFFYKNWWLYNFLMI---MIKVFFLKWIYISWDDTGQS-LIFGIDSVSYWLIVLSFWISGLMTMAS 76
Cdd:MTH00068    1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTnslIIAFLSLMWFNLPSETMNFTnKYFGIDQISSPLLILTCWLLPLMILAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  77 gKNFFKNMLENY---FTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMY-MFYTLLASLP 152
Cdd:MTH00068   81 -QNHLKNEPINRqrtYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYfLFYTLAGSLP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 153 LLLGFIYIYKNNNYLYYPLMSWIDCSDLDLIY-----FSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLG 227
Cdd:MTH00068  160 LLIALLILQNSLGSLSLILLELMSPMQLMTYTnkiwwLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 228 GYGLTRFMILISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I** 307
Cdd:MTH00068  240 GYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISH 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 308 *******FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMFL 387
Cdd:MTH00068  320 GLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLG 399

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1916859010 388 SFFSAAYSLFLFSFSQHGSDFTEDYSSEMINFREYQVLFMHWIPFNFLFLSEE 440
Cdd:MTH00068  400 TLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPE 452
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-431 6.37e-44

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 159.67  E-value: 6.37e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   1 MLSLMSIMLFMIPISFFYKNWWL------YNFLMIMIKVFFLKwiYISWDDTGQSLIFGIDSVSYWLIVLSFWISGLMTM 74
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIwintttYSLLISLISLLLLN--QPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLM 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  75 ASGKNFFKNMLEN--YFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMY-MFYTLLASL 151
Cdd:MTH00110   79 ASQHHLSKEPLTRkkLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYfLFYTLVGSL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 152 PLLLGFIYIYKNNNYLYYPLMSWIDCSDL-----DLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTL 226
Cdd:MTH00110  159 PLLVALLYIQNNLGSLNFLLLQLWAQPLPnswsnNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 227 GGYGLTRFMILISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I* 306
Cdd:MTH00110  239 GGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIA 318

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 307 ********FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMF 386
Cdd:MTH00110  319 HGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGL 398

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|
gi 1916859010 387 LSFFSAAYSLFLFSFSQHGSdftedYSSEMINF-----REYQVLFMHWIP 431
Cdd:MTH00110  399 NMLITALYSLYMLITTQRGK-----LTHHINNIkpsftRENTLMALHLLP 443
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 6-440 2.74e-43

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 158.20  E-value: 2.74e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   6 SIMLF----MIPISFFYKNWWLYNFLMIMIKVFFLKWIyiswDDTGQS---LIFGIDSVSYWLIVLSFWISGLMTMASGK 78
Cdd:MTH00127    8 TLMLIpttwLTPAKWLWTTTLAHSLLIALASLTWLKNL----SETGWSslnLYMATDPLSTPLLVLTCWLLPLMILASQN 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  79 NFFKNML--ENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMY-MFYTLLASLPLLL 155
Cdd:MTH00127   84 HTAPEPInrQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYfLFYTLAGSLPLLV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 156 GFIYIYKNNNYLYYPLMSWIDCSDLD-----LIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYG 230
Cdd:MTH00127  164 ALLLLQNSTGTLSMLTLQYSQPLQLSswadkLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYG 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 231 LTRFMILISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL*******LS**G********I***** 310
Cdd:MTH00127  244 MMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLT 323

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 311 ****FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMFLSFF 390
Cdd:MTH00127  324 SSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLI 403

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|
gi 1916859010 391 SAAYSLFLFSFSQHGSDFTEDYSSEMINFREYQVLFMHWIPFNFLFLSEE 440
Cdd:MTH00127  404 TAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPE 453
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 49-426 1.50e-27

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 114.39  E-value: 1.50e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  49 SLIFGIDSVSYWLIVLSFW---ISGLMTMASGKNFFKNmlenyFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLL 125
Cdd:MTH00204   76 PLVFAVDGVSLFFILLTTLlipICILISWKSIKFLFKE-----FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFL 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 126 LILGWGYKPELSQAGMYMF-YTLLASLPLLLGFIYIYKNNNYLYYPLMSWI--DCSDLDLIYFSMIMAFLVKLPMYMLHL 202
Cdd:MTH00204  151 LIGIWGSREEKVRASYYFFfYTFAGSVFMLLGIFQLYSITGTTDYQILLNIklPLSIQKWLLVGFFLSLAVKIPQIPFHI 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 203 WLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILISFLGT-YMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS*** 281
Cdd:MTH00204  231 WLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASeYFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAH 310

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 282 MSL*******LS**G********I*********FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISL 361
Cdd:MTH00204  311 MGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSC 390

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1916859010 362 NLLGEISILNSIGGYYSGGMMLLMFLSFFSAAYSLFLFSFSQHGSDFTEDYSSEMINFREYQVLF 426
Cdd:MTH00204  391 NFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAIL 455
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 106-392 4.73e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.93  E-value: 4.73e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 106 SLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMYMF-YTLLASLPLLLGFIYIYKNNNYLYYPLMS-----WIDCSD 179
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFlLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 180 LDLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILISFLGTYMNKYLIIFGLVGGGS 259
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 260 RSF**L**IDVKSLIPYSS***MSL*******LS**G********I*********FFL*********SRWELINKGGILI 339
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1916859010 340 F-PSSTFWWFLLCSSNMAAPISLNLLGEISILNSIggyYSGGMMLLMFLSFFSA 392
Cdd:pfam00361 241 TmPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA---VAASWIFLVLAGVVGS 291
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 47-392 3.46e-24

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 104.62  E-value: 3.46e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  47 GQSLIFGIDSVSYWLIVLSFWISGLMTMASGKNFfkNMLENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLL 126
Cdd:MTH00226   93 GGPLVFAVDGISIYFIILTGFIVPCSILISWHSV--KYLTKSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLI 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 127 ILGWGYKPELSQAGMYMFYTLLASLPLLLGFIY----IYKNNNYLYYPLMSWIDCSDL-DLIYFSMIMAFLVKLPMYMLH 201
Cdd:MTH00226  171 LGIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFslynIHGTTDYLTLASCSHVVSEQTqKWIFLGIFLAMAVKIPIFPFH 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 202 LWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILISFLGTY-MNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS** 280
Cdd:MTH00226  251 IWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQnLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVA 330

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 281 *MSL*******LS**G********I*********FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPIS 360
Cdd:MTH00226  331 HMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPS 410

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1916859010 361 LNLLGE-ISILNS------IGGYYSGGMMLLMFLSFFSA 392
Cdd:MTH00226  411 GNFIGEyLSILSSfnwnpiIGVFVCSGVILSAVYSFYFA 449
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 30-282 2.77e-21

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 96.04  E-value: 2.77e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  30 MIKVFFLKWIyiswDDTGQSLIFGIDSVSYWLIVLSFWIsGLMTMASGKNFFKNMLENYFtLVVLLLLLILILCFSSLNI 109
Cdd:PRK05846   60 FQFVEKHPWI----PRFGISYHLGVDGISLLLVVLTALL-TPLAVLASWEEIKKRVKFYM-AALLWLEGGVIGVFAALDL 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 110 LMFYVFFESSLLPTLLLILGWGYKPELSQAGMYMFYTLLASLPLLLGFIYIY-----KNNNYLYYPLMSW-IDCSDLDLI 183
Cdd:PRK05846  134 LLFYVFFEAMLIPMYFLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAIIYLVvvyynATGTFDIADLLNLpLPPGVQYWL 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 184 YFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMI-LISFLGTYMNKYLIIFGLVGGGSRSF 262
Cdd:PRK05846  214 FLAFFIAFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLpLFPDASHEFAPIIITLGVIAIIYGAL 293

                         250       260
                  ....*....|....*....|
gi 1916859010 263 **L**IDVKSLIPYSS***M 282
Cdd:PRK05846  294 VALAQTDIKKLIAYSSISHM 313
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 53-284 1.57e-20

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 93.85  E-value: 1.57e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  53 GIDSVSYWLIVLSFWISGLMTMASGKNFFKNmlENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGY 132
Cdd:TIGR01972  74 GVDGISLLLVLLTALLTLLAILASWESIQKR--VKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 133 KPELSQAGMYMFYTLLASLPLLLGFIYIYknnnYLYYPLMSWIDCSDLDL-------IYFSMIMAFLVKLPMYMLHLWLP 205
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLY----FLGGGTFDLLELLNLPLpfgvqtwLFLAFFIAFAVKVPLFPLHTWLP 227

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 206 KAHVEAPIAGSMILAGILLTLGGYGLTRFMI-LISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL 284
Cdd:TIGR01972 228 DAHVEAPTAGSVILAGVLLKMGTYGFLRFNLpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGF 307
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 49-426 1.15e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 88.19  E-value: 1.15e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  49 SLIFGIDSVSYWLIVLSFWISGLMTMASGKNFfkNMLENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLIL 128
Cdd:MTH00217   73 PVVFAVDGISIFFLILTALLTPICILISWNSI--KFLIKEFLLCLLVIEILLMGVFTILDLVGFYILFEGILIPMFLIIG 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 129 GWGYKPELSQAGMYMF-YTLLASLPLLLGFIYIYKNNNYLYYPLMS--WIDCSDLDLIYFSMIMAFLVKLPMYMLHLWLP 205
Cdd:MTH00217  151 IWGSREEKVQASYYFFfYTFIGSVFMLLGIFTLYSYAGTTDYQALCclKIEKELQYFIFLGFFLSLAIKIPKIPFHIWLP 230

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 206 KAHVEAPIAGSMILAGILLTLGGYGLTRFMI-LISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MSL 284
Cdd:MTH00217  231 QAHVEAPVAGSVILAGVLLKLGGYGFIRFSWpLLPEASEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGL 310

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 285 *******LS**G********I*********FFL*********SRWELINKGGILIFPSSTFWWFLLCSSNMAAPISLNLL 364
Cdd:MTH00217  311 VTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFV 390

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1916859010 365 GE-ISILNS------IGGYYSGGMMLlmflsffSAAYSLFLFSFSQHGSDFTEDYSSEMINFREYQVLF 426
Cdd:MTH00217  391 GEfLSLLAAfeysyiVGVLASLGMVL-------SAGYSIYLYNRVCFGAPSKYLYFSRDLNRREFYVLL 452
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-278 4.40e-18

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 86.29  E-value: 4.40e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  49 SLIFGIDSVSYWLIVLSFWISGLMTMASGKNFFKNmlENYFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLIL 128
Cdd:COG1008    75 SYHLGVDGISLPLVLLTALLTPLAILASWNEIKKR--PKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIG 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 129 GWGYKPELSQAGMYMFYTLLASLPLLLGFIYIYknnNYLYYPLMSWIDCSDLDL-------IYFSMIMAFLVKLPMYMLH 201
Cdd:COG1008   153 IWGGERRIYAAIKFFLYTLAGSLLMLVAILALY---FLAGALTFDIAELAAAPLpltaqllLFLAFFIAFAVKVPMFPFH 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 202 LWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILISFLGT-YMNKYLIIFGLVG---GgsrSF**L**IDVKSLIPYS 277
Cdd:COG1008   230 TWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEASaYFAPLLAALGVIGiiyG---ALVALAQTDLKRLIAYS 306


                  .
gi 1916859010 278 S 278
Cdd:COG1008   307 S 307
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 23-419 5.88e-18

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 85.34  E-value: 5.88e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  23 LYNFLMIMIKVFFLKWIYISWDDTGQSLIFGI-DSVSYWLIVLSFWISGLMTMASGKNFFKNMLENyftlvvlLLLLILI 101
Cdd:MTH00094    4 LFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFfDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSN-------LLILICL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 102 LCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMY-MFYTLLASLPLLLGFIYIYKNNNYLYYPL-MSWIdcsd 179
Cdd:MTH00094   77 LFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYlLFYAAFFSFPFLFVYLKNFFFFSLCYFDFfLSWE---- 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 180 ldlIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILISFLgtyMNKYLIIFGLVGGGS 259
Cdd:MTH00094  153 ---MFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFV---YNNFWIIFSLLGMIL 226

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 260 RSF**L**IDVKSLIPYSS***MSL*******LS**G********I*********FFL*********SRWELINKGGILI 339
Cdd:MTH00094  227 SSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSS 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 340 FPSSTFWWFLLCSSNMAAPISLNLLGEISILNSIGGYYSGGMMLLMFLSFFSAAYSLFLFSFSQHGSDFTEDYSSEMINF 419
Cdd:MTH00094  307 SMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLS 386
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 182-282 3.00e-14

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 74.68  E-value: 3.00e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 182 LIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRF-MILISFLGTYMNKYLIIFGLVGGGSR 260
Cdd:PRK12561  186 LLYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFnVQMLPDAHVYFAPALAILGVVNIIYG 265

                          90       100
                  ....*....|....*....|..
gi 1916859010 261 SF**L**IDVKSLIPYSS***M 282
Cdd:PRK12561  266 ALNAFAQDNVKRRLAYSSVSHM 287
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
35-282 1.37e-10

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 63.18  E-value: 1.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  35 FLKWIyiswDDTGQSLIFGIDSVSYWLIVLSFWISGLMTMASGKNFFKnmlENYFTLVVLLLLLILILCFSSLNILMFYV 114
Cdd:PRK06473   62 FIPWI----DSLGLSYHLGVDGLSLPLLVLNSLLTLIAIYSSDESIQR---PRFYYSLLLLLNAGVSGAFLAQDLLLFFL 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 115 FFESSLLPTLLLILGWGYKPELSQAGMYMFYTLLASLPLLLGF---IYIYKNNNYLYYPLMS-WIDCSDLDLIYFSMIMA 190
Cdd:PRK06473  135 FYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFlglVWLSGASSFDYEPLRShTLPLSTQLLLLAPILVG 214

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 191 FLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRF-MILISFLGTYMNKYLIIFGLVGGGSRSF**L**ID 269
Cdd:PRK06473  215 FGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFgVGLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKD 294

                         250
                  ....*....|...
gi 1916859010 270 VKSLIPYSS***M 282
Cdd:PRK06473  295 MKKMVAYSSIGHM 307
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 53-282 1.94e-10

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 62.80  E-value: 1.94e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  53 GIDSVSYWLIVLSFWISGLMTMASGKNFFKNMLenyFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGY 132
Cdd:PRK02546   84 GADGLSMPLILLTGFITTLAVLAAWPVTFKPKL---FYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGG 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 133 KPELSQAGMYMFYTLLASLplllgFIYIYKNNNYLYYPLMSWiDCSDLD----------LIYFSMIMAFLVKLPMYMLHL 202
Cdd:PRK02546  161 KKRQYAATKFILYTAGSSL-----FILLAALAMAFYGDTPTF-DMTALAakdfglgfqlLCYAGLLIAYGVKLPIVPLHT 234

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 203 WLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMI-LISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS*** 281
Cdd:PRK02546  235 WLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAgMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISH 314


                  .
gi 1916859010 282 M 282
Cdd:PRK02546  315 M 315
ndhD CHL00011
NADH dehydrogenase subunit 4
 52-282 9.62e-10

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 60.34  E-value: 9.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  52 FGIDSVSYWLIVLSFWISGLMTMA------SGKNFFKNMLENYftlvvllllLILILCFSSLNILMFYVFFESSLLPTLL 125
Cdd:CHL00011   80 LGIDGLSIGPILLTGFITTLATLAawpvtrNSRLFYFLMLAMY---------SGQIGLFSSRDLLLFFIMWELELIPVYL 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 126 LILGWGYKPELSQAGMYMFYTLLASLPLLLGFIYI--YKNN---------NYLYYPLMSWIdcsdldLIYFSMIMAFLVK 194
Cdd:CHL00011  151 LLSMWGGKKRLYSATKFILYTAGGSIFLLIGVLGMglYGSNeptlnfetlANQSYPVALEI------LFYIGFLIAYAVK 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 195 LPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRF-MILISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSL 273
Cdd:CHL00011  225 LPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRInMELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKR 304


                  ....*....
gi 1916859010 274 IPYSS***M 282
Cdd:CHL00011  305 IAYSSVSHM 313
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
4-282 7.58e-09

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 57.80  E-value: 7.58e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   4 LMSIMLFMIPISFFYKNWWLYNFLMIMIKVFFLKwiYISWDDT-GQSLIFGIDSVSYWLIVLSFWISGLMTMASGKNFFK 82
Cdd:PRK07363   28 LRQITLVFAVLVLAWSLFLLTQFDLSDPGMQFQE--YLPWNEPlGLSYSLGVDGLSLPLLVLNSLLTWIAIYSIGENTER 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010  83 NMLenyFTLVVLLLLLILILCFSSLNILMFYVFFESSLLPTLLLILGWGYKPELSQAGMYMFYTLLASLPLLLGFI---Y 159
Cdd:PRK07363  106 PRL---YYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGYASIKFLIYTAVSGLLVLAAFLgivW 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 160 IYKNNNYLYYPLMSWIDCSDLDLIYFSMIM-AFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRF-MIL 237
Cdd:PRK07363  183 LSGSTSFDYDAISTQNLSLNTQLILLTGLLlGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFgLQL 262

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1916859010 238 ISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***M 282
Cdd:PRK07363  263 FPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHM 307
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 182-278 4.82e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 51.69  E-value: 4.82e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 182 LIYFSMIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILI--SFLGTYMNKYLIIFGLVGGGS 259
Cdd:COG0651   206 AAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLV 285

                          90
                  ....*....|....*....
gi 1916859010 260 RSF**L**IDVKSLIPYSS 278
Cdd:COG0651   286 GALGALAQRDLKRLLAYSS 304
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 187-282 1.63e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 50.35  E-value: 1.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 187 MIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILI----SFLGTYMNKYLIIFGLVGGGSRSF 262
Cdd:PRK12667  229 ALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIfgisPSLIDFRAALSPILIILGAVSAII 308

                          90       100
                  ....*....|....*....|...
gi 1916859010 263 **L**I---DVKSLIPYSS***M 282
Cdd:PRK12667  309 GALMMVvqkDVKRLLAYSTISHM 331
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 200-284 4.62e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.77  E-value: 4.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 200 LHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILIS------FLGTYMnkylIIFGLVGGGSRSF**L**IDVKSL 273
Cdd:PRK06458  233 MHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDaaigsdFPGRLL----LIFGLLSVLVAAFFLLRQRDIKRL 308

                          90
                  ....*....|.
gi 1916859010 274 IPYSS***MSL 284
Cdd:PRK06458  309 FAYSSIEHMGL 319
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 187-284 2.30e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 46.41  E-value: 2.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 187 MIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILIsFLGTYMNK--------YLIIFGLVGGg 258
Cdd:PRK08375  208 VLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTV-FGGDFRFAlglgwllaVLALLSMLVG- 285

                          90       100
                  ....*....|....*....|....*.
gi 1916859010 259 srSF**L**IDVKSLIPYSS***MSL 284
Cdd:PRK08375  286 --SLAALGQDDVKRVLAYSTVSQMGY 309
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 187-284 2.72e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.29  E-value: 2.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 187 MIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAGILLTLGGYGLTRFMILI--SFLGTYMNKYLIIFGLVGGGSRSF** 264
Cdd:PRK08676  212 IFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSM 291

                          90       100
                  ....*....|....*....|
gi 1916859010 265 L**IDVKSLIPYSS***MSL 284
Cdd:PRK08676  292 LSQRNLKKLIAFSSIEHMGL 311
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-76 3.69e-05

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 42.51  E-value: 3.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010   1 MLSLMSIMLFMIPISFFYKNWWLY-----NFLMIMIKVFFLKWIYISWDDTGQSLIFGIDSVSYWLIVLSFWISGLMTMA 75
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWttstlYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCWLLPLMILA 80


                  .
gi 1916859010  76 S 76
Cdd:pfam01059  81 S 81
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 134-278 8.25e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 45.11  E-value: 8.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 134 PELSQAGMYMF-YTLLASLPLLLGFIYIYKNNNYLYYPLMSWIDcSDLDLIYFSMIMAFLVKLPMYMLHLWLPKAHVEAP 212
Cdd:PRK08667  158 EETQRAGIFYFvMTQLSTVFLMLGIIVLFIQTGSFELSPLGASA-GILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASP 236

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1916859010 213 IAGSMILAGILLTLGGYGLTRFMILISFLGTYMNKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS 278
Cdd:PRK08667  237 SNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSS 302
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 142-283 3.88e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.55  E-value: 3.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859010 142 YMFYTLLASLPLLLGFIYIYKNNNYLYYPLMSWIDCSDLDLIyfsmIMAFLVKLPMYMLHLWLPKAHVEAPIAGSMILAG 221
Cdd:PRK07234  149 YLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAFALI----ALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSG 224

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1916859010 222 ILLTLGGYGLTRFMILISFLGtymnKYLIIFGLVGGGSRSF**L**IDVKSLIPYSS***MS 283
Cdd:PRK07234  225 VVVKAGVFPLVRCALDVPGLD----LIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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