NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1916859107|gb|QOL00864|]
View 

NADH dehydrogenase subunit 4L [Notostaurus albicornis albicornis]

Protein Classification

NADH dehydrogenase subunit 4L( domain architecture ID 10009597)

NADH dehydrogenase subunit 4L is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 3-91 1.66e-22

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177218  Cd Length: 89  Bit Score: 82.89  E-value: 1.66e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  3 IFSVFTSLLIYFAGVYVFSSKRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDYFFPVIFLVFSVCEGALGLSILVSMIR 82
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1916859107 83 SHGNDFFNS 91
Cdd:MTH00162  81 SHGNDYFSS 89
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 3-91 1.66e-22

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 82.89  E-value: 1.66e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  3 IFSVFTSLLIYFAGVYVFSSKRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDYFFPVIFLVFSVCEGALGLSILVSMIR 82
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1916859107 83 SHGNDFFNS 91
Cdd:MTH00162  81 SHGNDYFSS 89
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
4-92 3.66e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 46.79  E-value: 3.66e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  4 FSVFTSLLIYFAGVYVFSSkRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDY--FFPVIFLVFSVCEGALGLSILVSMI 81
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLpqALILTAIVIAAAEAAVGLALLVRIY 79

                         90
                 ....*....|.
gi 1916859107 82 RSHGNDFFNSF 92
Cdd:pfam00420 80 RTHGTDDVDSL 90
 
Name Accession Description Interval E-value
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 3-91 1.66e-22

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 82.89  E-value: 1.66e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  3 IFSVFTSLLIYFAGVYVFSSKRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDYFFPVIFLVFSVCEGALGLSILVSMIR 82
Cdd:MTH00162   1 MMMLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                 ....*....
gi 1916859107 83 SHGNDFFNS 91
Cdd:MTH00162  81 SHGNDYFSS 89
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 1-97 2.71e-14

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 62.30  E-value: 2.71e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  1 MYIFSVFTSLLIYFAGVYVFSSKRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDYFFPVIFLVFSVCEGALGLSILVSM 80
Cdd:MTH00188   1 MFFSMILVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYMEKELYLSLVLLTFAACEASVGLALLVSL 80

                         90
                 ....*....|....*..
gi 1916859107 81 IRSHGNDFFNSFGFSLC 97
Cdd:MTH00188  81 IRSHGSDYVSSLNLIKC 97
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 4-92 4.53e-13

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 59.09  E-value: 4.53e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  4 FSVFTSLLIYFAGvyvFSSKRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDYFF--PVIFLVFSVCEGALGLSILVSMI 81
Cdd:MTH00125   6 FSLYTAFMLSLLG---LSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTpmPIILLTFSACEAGTGLALLVATT 82

                         90
                 ....*....|.
gi 1916859107 82 RSHGNDFFNSF 92
Cdd:MTH00125  83 RTHGSDHLKNL 93
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 2-97 3.17e-11

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 54.76  E-value: 3.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  2 YIFSVFTSLLIYFAGVYVFSSKRKHLLMVLLSLEYIVLSLFLLI-IVFFIEFDYDYFFPVIFLVFSVCEGALGLSILVSM 80
Cdd:MTH00013   1 MMSPLFILSISPFISMFNLSLQRKHLLMSLLSLEAMILSLALFIpLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVLM 80

                         90
                 ....*....|....*..
gi 1916859107 81 IRSHGNDFFNSFGFSLC 97
Cdd:MTH00013  81 TRSYGNDMLKSLTSNKC 97
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 5-97 9.41e-11

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 53.31  E-value: 9.41e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  5 SVFTSLLIYFAGVYVFSSKRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDYFFPVIFLVFSVCEGALGLSILVSMIRSH 84
Cdd:MTH00149   5 LLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLISFSSYLFLIILTFGACEASLGLSLLVSLIRLH 84

                         90
                 ....*....|...
gi 1916859107 85 GNDFFNSFGFSLC 97
Cdd:MTH00149  85 GNDYVSSLSSLKF 97
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 24-87 4.48e-10

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 51.50  E-value: 4.48e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1916859107 24 RKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDYFF--PVIFLVFSVCEGALGLSILVSMIRSHGND 87
Cdd:MTH00126  23 RTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSaaPMLLLAFSACEASAGLALLVATARTHGTD 88
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 1-87 9.89e-10

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 50.76  E-value: 9.89e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  1 MYIFSVFTSLLIYFAGvyvFSSKRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDYFF--PVIFLVFSVCEGALGLSILV 78
Cdd:MTH00067   3 PTYFTFYSAFLLGLMG---LAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFslPMFMLTFSACEASTGLALMV 79


                 ....*....
gi 1916859107 79 SMIRSHGND 87
Cdd:MTH00067  80 ATTRTHGTD 88
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 4-88 2.28e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 47.23  E-value: 2.28e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  4 FSVFTSLLIYFAGVYVFsskRKHLLMVLLSLEYIVLSLFLL--IIVFFIEFDYDYFFPVIFLVFSVCEGALGLSILVSMI 81
Cdd:MTH00107   6 MNIMLAFTISLLGLLMY---RSHLMSSLLCLEGMMLSLFIMatLTILNTHFTLASMMPIILLVFAACEAAVGLALLVMVS 82


                 ....*..
gi 1916859107 82 RSHGNDF 88
Cdd:MTH00107  83 NTYGTDY 89
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
4-92 3.66e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 46.79  E-value: 3.66e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  4 FSVFTSLLIYFAGVYVFSSkRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDY--FFPVIFLVFSVCEGALGLSILVSMI 81
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLpqALILTAIVIAAAEAAVGLALLVRIY 79

                         90
                 ....*....|.
gi 1916859107 82 RSHGNDFFNSF 92
Cdd:pfam00420 80 RTHGTDDVDSL 90
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 6-93 7.68e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 43.01  E-value: 7.68e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  6 VFTSLLIYFAGVYVFSSKRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDY--DYFFPVIFLVFSVCEGALGLSILVSMIRS 83
Cdd:MTH00181   2 MFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSssMLMFGLILLTFSACEAVLGLSLLVATNRT 81

                         90
                 ....*....|
gi 1916859107 84 HGNDFFNSFG 93
Cdd:MTH00181  82 HGSDHLLKFN 91
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 1-91 2.67e-05

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 39.13  E-value: 2.67e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859107  1 MYIFSVFTSLLIYFAGVYVFSsKRKHLLMVLLSLEYIVLSLFLLIIVFFIEFDYDYF--FPVIFLVFSVCEGALGLSILV 78
Cdd:MTH00043   1 MNIILIIILSSFFLGLLGILI-NRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNlsFSLLLLTLSACEASIGLSLMV 79

                         90
                 ....*....|...
gi 1916859107 79 SMIRSHGNDFFNS 91
Cdd:MTH00043  80 LLSRNHNSDLVAS 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH