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Conserved domains on  [gi|1916859111|gb|QOL00868|]
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NADH dehydrogenase subunit 2 [Sinophlaeoba bannaensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 1.46e-92

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 279.40  E-value: 1.46e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   1 MYNNSMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  81 KYTMWwekENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMaSIII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIIL-SAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 241 MLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENSWSVDIKSNKSKMILP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1916859111 321 LMTTISMMGLICTSNFMLF 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 1.46e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 279.40  E-value: 1.46e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   1 MYNNSMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  81 KYTMWwekENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMaSIII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIIL-SAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 241 MLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENSWSVDIKSNKSKMILP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1916859111 321 LMTTISMMGLICTSNFMLF 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-280 1.54e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 90.07  E-value: 1.54e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  24 SNSWLGVWMGLEINLLSIIPLLTDNKNMMI-NESAIKYFIIQAMASTMLLISILLI-----------QMKYTMWWEKENV 91
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRsSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  92 PSM---MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILL-TWQKIAPMMTL-------SYCIKMSMFTFSVIMASIII 160
Cdd:pfam00361  81 LLLlflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSM----IISENTWELYFYIYLLLNTVMVLMFSSMKL------YFLNQVYLSG 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYrrvhtrNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1916859111 231 NMKTeIKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVT 280
Cdd:pfam00361 241 TMPI-LALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-338 7.66e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.84  E-value: 7.66e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  17 GTILSISSNSWLGVWMGLEINLLSIIPLLT-DNKNMMINESAIKYFIIQAMASTMLLISILLIQ-----------MKYTM 84
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgslnfedlLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  85 WWEKENVPSMM----IMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIA---PMMTLSYCI------KMSMFTF 151
Cdd:TIGR01770 194 NGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfgfseAWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 152 SVIMASIIIGAMGGLNQTSLRQIMAYSSISHLGW-MISSMIISENTWE---LYFYIYLLLNTVMVLMFSSMKLYFLNQVY 227
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 228 ----LSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRIsfSAIIMSH 301
Cdd:TIGR01770 354 yisdFAGLFKTNpiLAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFD 431

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1916859111 302 TENSWSVDIKSNKSKMILPLMTTISMMGLICTSNFML 338
Cdd:TIGR01770 432 KPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 2.71e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 82.47  E-value: 2.71e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   8 LLFLSSLmmGTILSISSNSWLGVWMGLEinLLSI-----IPLLTDNKNMmiNESAIKYFIIQAMASTMLL--ISIL---- 76
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLE--LLSLslyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLygISLLygat 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  77 ----LIQMKYTMWWEKENVPSM-----MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLsycIKMS 147
Cdd:COG1007   181 gslnLAGIAAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAAL---LRLL 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 148 MFTFS------------VIMASIIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMII--SENTWELYFY--IYLLLNTV- 210
Cdd:COG1007   258 VEAFPglaadwqlllavLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgtPLGVSAALFYllAYLFMNLGa 337

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 211 --MVLMFSSMKLYFLNQVYLSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITL 286
Cdd:COG1007   338 faVILLLSRKGGEAEEIEDLAGLARRSplLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417


                  ....*.
gi 1916859111 287 YYYMRI 292
Cdd:COG1007   418 YYYLRV 423
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 1.46e-92

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 279.40  E-value: 1.46e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   1 MYNNSMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  81 KYTMWwekENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMaSIII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIIL-SAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 241 MLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENSWSVDIKSNKSKMILP 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1916859111 321 LMTTISMMGLICTSNFMLF 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 7-337 4.61e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 193.50  E-value: 4.61e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   7 KLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILlIQMKYTMWW 86
Cdd:MTH00112    6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSST-TNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  87 E----KENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPM---MTLSYCIKMSMFTFSVIMaSII 159
Cdd:MTH00112   85 DitqlTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLtllLMTSNSLNPTLLLTLAIL-STL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 160 IGAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFM 239
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 240 MMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMS--HTENSWSVDIKSNKSKM 317
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLppNTTNMMMKWRTKPKKNT 323

                         330       340
                  ....*....|....*....|
gi 1916859111 318 ILPLMTTISMMGLICTSNFM 337
Cdd:MTH00112  324 LTATLTTLSTLLLPLSPMIL 343
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 10-340 1.28e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 192.44  E-value: 1.28e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  10 FLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILlIQMKYTMWWEKE 89
Cdd:MTH00070    9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSST-INAWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  90 NV----PSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMA--SIIIGAM 163
Cdd:MTH00070   88 NMqtplPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGllSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 164 GGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMMMLS 243
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 244 LLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSH--TENSWSVDIKSNKSKMILPL 321
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSpnTSNSKLYWRFKNKTNNLLSL 327

                         330
                  ....*....|....*....
gi 1916859111 322 MTTISMMGLICTSNFMLFY 340
Cdd:MTH00070  328 TIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-340 3.32e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 188.90  E-value: 3.32e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   8 LLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTMWW- 86
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTi 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  87 --EKENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTL---SYCIKMSMFTFSVIMaSIIIG 161
Cdd:MTH00105   87 tkLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTLAIL-SILIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 162 AMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMMM 241
Cdd:MTH00105  166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 242 LSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFS-AIIMSHTENSWSVDI--KSNKSKMI 318
Cdd:MTH00105  246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYStSLTMFPSTNNMKMKWqfENTKPMTL 325

                         330       340
                  ....*....|....*....|..
gi 1916859111 319 LPLMTTISMMGLICTSNFMLFY 340
Cdd:MTH00105  326 LPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-340 1.27e-56

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 187.45  E-value: 1.27e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   3 NNSMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKY 82
Cdd:MTH00041    2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  83 TMWW---EKENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMA--S 157
Cdd:MTH00041   82 GSWSingPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGilS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 158 IIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIK 237
Cdd:MTH00041  162 VLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 238 FMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENS-----WSVDIKS 312
Cdd:MTH00041  242 FLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSislfsWRNSGNI 321

                         330       340
                  ....*....|....*....|....*...
gi 1916859111 313 NKSKMILPLMTTISMMGLICTSNFMLFY 340
Cdd:MTH00041  322 TVYGVILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-331 8.47e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 171.61  E-value: 8.47e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   5 SMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTM 84
Cdd:MTH00144    4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  85 WWEkenvpSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCI---KMSMFTFSVIMASIIIG 161
Cdd:MTH00144   84 WFS-----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlyWLAYLLCVISVLSALVG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 162 AMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVyLSGNMKTEIKFMMM 241
Cdd:MTH00144  159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL-GSLKPSYKTGLSII 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 242 LSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIImshtenSWSVDIKSNKSKMILPL 321
Cdd:MTH00144  238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSKVLNSS 311

                         330
                  ....*....|
gi 1916859111 322 MTTISMMGLI 331
Cdd:MTH00144  312 IISLNLLGGL 321
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-330 8.27e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 169.60  E-value: 8.27e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   9 LFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLI-SILLIQMkyTMWWE 87
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFaSTTNAWL--TGQWD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  88 ----KENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMmTLSYCIKMSMFTFSVIM--ASIIIG 161
Cdd:MTH00135   86 iqqmSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLglTSTLVG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 162 AMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMMM 241
Cdd:MTH00135  165 GWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTP 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 242 LSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSA--IIMSHTENS---WSvdIKSNKSK 316
Cdd:MTH00135  245 LILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMtlTISPNTLNGttpWR--LPSTQLT 322

                         330
                  ....*....|....
gi 1916859111 317 MILPLMTTISMMGL 330
Cdd:MTH00135  323 LPLAISTTATLMLL 336
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 6-339 7.30e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 167.07  E-value: 7.30e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   6 MKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTMW 85
Cdd:MTH00200    5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  86 WEKE---NVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLS--YCIKMSMFTFSVIMASIII 160
Cdd:MTH00200   85 GISEmlgPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLV 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMM 240
Cdd:MTH00200  165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 241 MLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMS--HTENSWSVDIKSNKSKMI 318
Cdd:MTH00200  245 GLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLspNQINMMSSWRTKSNSNLL 324

                         330       340
                  ....*....|....*....|.
gi 1916859111 319 LPLMTTISMMGLICTSNFMLF 339
Cdd:MTH00200  325 VGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-328 1.25e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 166.00  E-value: 1.25e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   9 LFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTMwwek 88
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL---- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  89 ENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMASIIIGAMGGLNQ 168
Cdd:MTH00197   78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 169 TSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMMMLSLLSLG 248
Cdd:MTH00197  158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 249 GLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENSWSVDIKSNKSKMILPLMTTISMM 328
Cdd:MTH00197  238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPLL 317
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-323 5.39e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 161.87  E-value: 5.39e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   8 LLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTMwwe 87
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSL--- 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  88 KENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYC--IKMSMFTFSVIMASIIIGAMGG 165
Cdd:MTH00011   86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAGGLGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 166 LNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMMMLSLL 245
Cdd:MTH00011  166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1916859111 246 SLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENSWSVDIKSNKSKMILPLMT 323
Cdd:MTH00011  246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILISMCT 323
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-292 3.57e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 92.79  E-value: 3.57e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  16 MGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMIN-ESAIKYFIIQAMASTMLL------------ISILLIQMKY 82
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLfgcallcgttggLHLSYINLVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  83 TMWWEKENV----PSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTL-SYCIKMSMFTFSVIMaS 157
Cdd:MTH00196   84 NSGQSFSSVsvpiGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILvSIGLNVNILLIGGLF-S 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 158 IIIGAMGGLNQTSLRQIMAYSSISHLGWMISSM----IISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMK 233
Cdd:MTH00196  163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSGLSR 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1916859111 234 TE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRI 292
Cdd:MTH00196  243 RLpiLAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-280 1.54e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 90.07  E-value: 1.54e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  24 SNSWLGVWMGLEINLLSIIPLLTDNKNMMI-NESAIKYFIIQAMASTMLLISILLI-----------QMKYTMWWEKENV 91
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRsSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  92 PSM---MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILL-TWQKIAPMMTL-------SYCIKMSMFTFSVIMASIII 160
Cdd:pfam00361  81 LLLlflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSM----IISENTWELYFYIYLLLNTVMVLMFSSMKL------YFLNQVYLSG 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYrrvhtrNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1916859111 231 NMKTeIKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVT 280
Cdd:pfam00361 241 TMPI-LALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 17-338 7.66e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 83.84  E-value: 7.66e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  17 GTILSISSNSWLGVWMGLEINLLSIIPLLT-DNKNMMINESAIKYFIIQAMASTMLLISILLIQ-----------MKYTM 84
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgslnfedlLLFLS 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  85 WWEKENVPSMM----IMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIA---PMMTLSYCI------KMSMFTF 151
Cdd:TIGR01770 194 NGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfgfseAWQIFLA 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 152 SVIMASIIIGAMGGLNQTSLRQIMAYSSISHLGW-MISSMIISENTWE---LYFYIYLLLNTVMVLMFSSMKLYFLNQVY 227
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 228 ----LSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRIsfSAIIMSH 301
Cdd:TIGR01770 354 yisdFAGLFKTNpiLAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFD 431

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1916859111 302 TENSWSVDIKSNKSKMILPLMTTISMMGLICTSNFML 338
Cdd:TIGR01770 432 KPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-292 2.71e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 82.47  E-value: 2.71e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   8 LLFLSSLmmGTILSISSNSWLGVWMGLEinLLSI-----IPLLTDNKNMmiNESAIKYFIIQAMASTMLL--ISIL---- 76
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLE--LLSLslyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLygISLLygat 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  77 ----LIQMKYTMWWEKENVPSM-----MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLsycIKMS 147
Cdd:COG1007   181 gslnLAGIAAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAAL---LRLL 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 148 MFTFS------------VIMASIIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMII--SENTWELYFY--IYLLLNTV- 210
Cdd:COG1007   258 VEAFPglaadwqlllavLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgtPLGVSAALFYllAYLFMNLGa 337

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 211 --MVLMFSSMKLYFLNQVYLSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITL 286
Cdd:COG1007   338 faVILLLSRKGGEAEEIEDLAGLARRSplLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417


                  ....*.
gi 1916859111 287 YYYMRI 292
Cdd:COG1007   418 YYYLRV 423
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-292 1.70e-15

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 77.17  E-value: 1.70e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   8 LLFLSSLMmGTILSISSNSWLGVWMGLEinLLSIiPLLT----DNKNMMINESAIKYFIIQAMASTMLLISILLI----- 78
Cdd:PRK05777  107 LLVLFALL-GMMVMVSANDLLTLFLGLE--LLSL-PLYAlaalRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatg 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  79 -----QMKYTMWWEKENVPSM-----MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIA---PMMTLSYCIK 145
Cdd:PRK05777  183 slsfaGIAKALADGSGNSLLLlfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaVLLRLLVVAF 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 146 MSMFTFSVIM------ASIIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMIIseNTWE------LYFYIYLLLNT---V 210
Cdd:PRK05777  263 GGLSEDWQQVlaiiaiASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAA--GTAEgysavlFYLLAYLFMTLgafG 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 211 MVLMFSSMKLYFLNQVYLSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYY 288
Cdd:PRK05777  341 VISLLRRKGGEAESISDFAGLSKRSplLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFY 420


                  ....
gi 1916859111 289 YMRI 292
Cdd:PRK05777  421 YLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 16-292 4.14e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 75.82  E-value: 4.14e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  16 MGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMIN-ESAIKYFIIQAMASTMLLISILLIqmkYTMWWEK------ 88
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAYStEAGLKYFVLGAVSSGLFLFGCALL---YGLTGETsiqgin 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  89 ----ENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMASIIIGAMG 164
Cdd:MTH00199  185 siltGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIG 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 165 GLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVM-VLMFS---SMKLYFLNQVYLSGNMKTE--IKF 238
Cdd:MTH00199  265 ALNQTKIKRLLAYSGIGHMGFILFGVAIGSFESIQASLIYMIIYVIMsICSFSiilSLKLTKGLIVEVSGLSRKNpvIAL 344

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1916859111 239 MMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRI 292
Cdd:MTH00199  345 TLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-292 3.72e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 70.27  E-value: 3.72e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  16 MGTILSISSNSWLGVWMGLEINLLSIIPL---------LTDNKNMMINESAIKYFIIQAMASTMLLI------------- 73
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFgcalyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  74 ---SILLIQMKYT-MWWEKENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMF 149
Cdd:MTH00198  279 mlgTILSATLETTnIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 150 TFSVIMASIIIGAMGGLNQTSLRQIMAYSSISHLGWMIssMIISENTWE------LYFYIYLLLNTVMVLMFSSMK---- 219
Cdd:MTH00198  359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL--IGVSAGTYEslqaswTYAVTYLVSALASFTVICTLEefgt 436

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 220 -----------------LYFLNQVYLSGNMKTEIKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMM------- 275
Cdd:MTH00198  437 rtptsrqrdgsfgnynlVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLsiyylva 516

                         330
                  ....*....|....*..
gi 1916859111 276 FLMVTFTTITLYYYMRI 292
Cdd:MTH00198  517 LFAIICTCISAFYYIRI 533
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-292 3.73e-08

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 54.38  E-value: 3.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  10 FLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKY-TMWWE- 87
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATgTLNMAd 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  88 -----KENVPSMMIMSSMLL------KMGAAPFHFWLPEVMGS-----SSWMNCL--------ILLTWQKIAPMMTLSYc 143
Cdd:COG0651   192 laarlAELDPGLLLAAFALLlvgfgiKAALFPLHFWLPDAYPAapspvSALLSGLltkvgvyaILRVLTLLFGADPALF- 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 144 ikMSMFTFSVIMASIIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMIISeNTWELYFYIYLLLNTVMV--LMFSS---- 217
Cdd:COG0651   271 --LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLG-TPLGLAGALFHLLNHALAkaLLFLAagai 347

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1916859111 218 -MKLYFLNQVYLSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRI 292
Cdd:COG0651   348 eRATGTRDLDKLGGLGKRMplTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-187 2.22e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.86  E-value: 2.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  55 ESAIKYFIIQAMASTMLLISILLI-------QMKYTMWWEKENVPSM------MIMSSMLLKMGAAPFHFWLPEV--MGS 119
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLygqygtlNMAYLAVKMSENPTVVakialaLFIAGLAMKSGAVPVHMWLPDAypAAP 251

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1916859111 120 SSWMNCLILLTWQKIAPMMTLSYCI---KMSMFTFSVIM-----ASIIIGAMGGLNQTSLRQIMAYSSISHLGWMI 187
Cdd:PRK08376  252 SSISAMLLVIKQAGLYALARVLFSIygpAINLATVGWVIiilgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYML 327
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-187 4.14e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 45.26  E-value: 4.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  34 LEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMK---YTMWWEKENVPSM--------MIMSSMLL 102
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVtgtLNMADLAGALAENptvvtafgFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 103 KMGAAPFHFWLPEVM-GSSSWMNCLILLTWQKIAPMMTlsYCIKMSMFTFSVI-------------MASIIIGAMGGLNQ 168
Cdd:PRK08375  215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYAL--IRIYFTVFGGDFRfalglgwllavlaLLSMLVGSLAALGQ 292

                         170
                  ....*....|....*....
gi 1916859111 169 TSLRQIMAYSSISHLGWMI 187
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYIL 311
PRK12650 PRK12650
DUF4040 family protein;
91-187 2.05e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.11  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  91 VPSMMIMSSMLLKMGAAPFHFWLPEVMGSsswmnclilltwqkIAPMMTLSYCIKMS------MFTFSVIMASI------ 158
Cdd:PRK12650  209 VVAVLIAVAAFTKSAQFPFHFWLPEAMAA--------------ITPVSAFLHAAAVVkagiylLLRFSPVFHDVavwnwl 274

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1916859111 159 ---------IIGAMGGLNQTSLRQIMAYSSISHLGWMI 187
Cdd:PRK12650  275 liivgmitaLMGAVFAVQKTDLKKLTAYSTVSQLGWIV 312
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 8-187 1.10e-03

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 40.69  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   8 LLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMineSAIKYFIIQAMASTMLLISILLIQMKYTMW-- 85
Cdd:TIGR01972 112 LLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIY---AAMKFFLYTLAGSLLMLLAILGLYFLGGGTfd 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  86 ---WEKENVPS-------MMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILL-TWQKIAPMMTLSYCIKM---SMFTF 151
Cdd:TIGR01972 189 lleLLNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAgVLLKMGTYGFLRFNLPLfpdASLYF 268

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1916859111 152 SVIMA-----SIIIGAMGGLNQTSLRQIMAYSSISHLGWMI 187
Cdd:TIGR01972 269 APVLAalgviAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 95-278 1.40e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 39.85  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  95 MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMASIIIGAMggLNQTSLRQI 174
Cdd:MTH00091   62 FQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM--FLLKSYKNL 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 175 MAYSSISHLGWMISSMIISENTwelYFYIYLLLNTVMVLMFSSMklyflnqvylsgNMKTEIKFMMMLSLLSLGGLPPML 254
Cdd:MTH00091  140 LILSSTESFNWLILSFFFSFFN---VFFLFFYYFLLMLFLIPKF------------NNVNKLNFVSWETLLVFMNLPFSV 204

                         170       180
                  ....*....|....*....|....
gi 1916859111 255 GFLPKWIVIQSLVDNNMTTMMFLM 278
Cdd:MTH00091  205 TFFVKIFSLSEILKVLGFFLLFLL 228
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
28-296 1.49e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.32  E-value: 1.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  28 LGVWmgLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILL------------IQMKYTmwwEKENVPSMM 95
Cdd:PRK12663  133 LYVW--FEVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLlygtfgtlnmahIAMRLN---DMGDTATLT 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  96 IMSSMLL-----KMGAAPFhFWLPevmGSSSWMNCLI------LLT----WQKIAPMMTLSYCIKMSMFTFSVIMASI-- 158
Cdd:PRK12663  208 TIALLFLlafgmKAALFPF-MWLP---AAYHTPNTEVaalfaaLLTkvgiYALIRVFTLLFPQERELLHPLLATMAAItm 283

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 159 IIGAMGGLNQTSLRQIMAYSSISHLGWMISSMIISeNTWELYFYIYLLLNTVMVLMFssmkLYFLNQV-----------Y 227
Cdd:PRK12663  284 VIGALGALAYKDIRRIAGYQVISSIGFILLGLALG-TPAGINGAIFYLVHDMVVKTA----LFLIAGSlvrltgyrslqY 358

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1916859111 228 LSGNMKTEIKFMMMLSLLSLGG--LPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSA 296
Cdd:PRK12663  359 LGGLYRKEPLFGALFLILIFAIggLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLA 429
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 57-184 1.83e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 40.06  E-value: 1.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  57 AIKYFIIQAMASTMLLISILLIQMKYTMW------WEKENVPS---MMIMSSMLL----KMGAAPFHFWLPEVMGSSS-- 121
Cdd:COG1008   163 AIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaeLAAAPLPLtaqLLLFLAFFIafavKVPMFPFHTWLPDAHVEAPta 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 122 -------------------WMNCLILLTWQKIAPMMtlsycikmsmFTFSVImaSIIIGAMGGLNQTSLRQIMAYSSISH 182
Cdd:COG1008   243 gsvllagvllkmggygllrFALPLFPEASAYFAPLL----------AALGVI--GIIYGALVALAQTDLKRLIAYSSVSH 310


                  ..
gi 1916859111 183 LG 184
Cdd:COG1008   311 MG 312
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 57-187 3.21e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.03  E-value: 3.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  57 AIKYFIIQAMASTMLLISILLIQMKYTMW--------WEKENVPSMM-------IMSSMLLKMGAAPFHFWLPEVMGSS- 120
Cdd:PRK05846  163 ATKFFLYTLLGSLLMLVAIIYLVVVYYNAtgtfdiadLLNLPLPPGVqywlflaFFIAFAVKMPMFPLHTWLPDAHVQAp 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 121 ---SWMNCLILLtwqKIAPMMTLSYCIKMS----------MFTFSVIMasIIIGAMGGLNQTSLRQIMAYSSISHLGWMI 187
Cdd:PRK05846  243 tagSVLLAGILL---KMGAYGLLRFSLPLFpdashefapiIITLGVIA--IIYGALVALAQTDIKKLIAYSSISHMGFVT 317
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 3-185 5.54e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 38.44  E-value: 5.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   3 NNSMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLS--IIPLLTDNKNmmiNESAIKYFIIQAMASTMLLISILLIQM 80
Cdd:PRK08668   96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfMMVPMGKKES---RKASLKYFVLSAIGAYAMLYAIFLIYA 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  81 KYTMWWEKENVPSMM--------------IMSSMLLKMGAAPFHFWLPEVMGSS------------SWMNCLILLTWQKI 134
Cdd:PRK08668  173 KTGTFDFADISQGLIndtstgfalivflfLLAFGVAKAGIFPLHVWAPDAYSEApqsfsavlsgqlSKLGAYGFLLVLYV 252

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1916859111 135 APMMTL--SYCIKMSMFTFSVIMA-----SIIIGAMGGLNQTSLRQIMAYSSISHLGW 185
Cdd:PRK08668  253 LPGTKLfsEFGTYRGVPLFNYILAwlgniSIIVGTLMAILQEDIKKLIAYSSVANGGY 310
ND2 MTH00059
NADH dehydrogenase subunit 2; Provisional
 14-134 7.21e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177131  Cd Length: 289  Bit Score: 37.60  E-value: 7.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  14 LMMGTILSISSNSWLGVWMGLEINLLSIIP--LLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTMwwekenv 91
Cdd:MTH00059   15 SLFFCLLCLVSDSLLGFWVFLELCGLSLIPcfFLSSNSNVLNFYSSLLSYIVMSGLSSSLLVSGLLFSDLYFF------- 87

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1916859111  92 psmmIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKI 134
Cdd:MTH00059   88 ----IFFGFVVKFGLFPFMFWVYRVFSNSSWVVIWLISVVMKF 126
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 6-192 9.32e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 37.63  E-value: 9.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111   6 MKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYT-- 83
Cdd:MTH00127   95 MYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTgt 174

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111  84 --MWWEKENVPSMMI-----------MSSMLLKMGAAPFHFWLPE------VMGSSSWMNCLILLTWQKIAPMMTLSYCI 144
Cdd:MTH00127  175 lsMLTLQYSQPLQLSswadklwwagcLLAFLVKMPLYGVHLWLPKahveapIAGSMVLAAVLLKLGGYGMMRMMVMLDPL 254

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1916859111 145 KMSMFTFSVIMA--SIIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMII 192
Cdd:MTH00127  255 TKELSYPFIILAlwGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILI 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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