|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-339 |
1.46e-92 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 279.40 E-value: 1.46e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 1 MYNNSMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQM 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 81 KYTMWwekENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMaSIII 160
Cdd:MTH00160 81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIIL-SAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMM 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 241 MLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENSWSVDIKSNKSKMILP 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316
|
330
....*....|....*....
gi 1916859111 321 LMTTISMMGLICTSNFMLF 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-280 |
1.54e-20 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 90.07 E-value: 1.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 24 SNSWLGVWMGLEINLLSIIPLLTDNKNMMI-NESAIKYFIIQAMASTMLLISILLI-----------QMKYTMWWEKENV 91
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRsSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 92 PSM---MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILL-TWQKIAPMMTL-------SYCIKMSMFTFSVIMASIII 160
Cdd:pfam00361 81 LLLlflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSM----IISENTWELYFYIYLLLNTVMVLMFSSMKL------YFLNQVYLSG 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYrrvhtrNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1916859111 231 NMKTeIKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVT 280
Cdd:pfam00361 241 TMPI-LALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
17-338 |
7.66e-18 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 83.84 E-value: 7.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 17 GTILSISSNSWLGVWMGLEINLLSIIPLLT-DNKNMMINESAIKYFIIQAMASTMLLISILLIQ-----------MKYTM 84
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgslnfedlLLFLS 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 85 WWEKENVPSMM----IMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIA---PMMTLSYCI------KMSMFTF 151
Cdd:TIGR01770 194 NGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfgfseAWQIFLA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 152 SVIMASIIIGAMGGLNQTSLRQIMAYSSISHLGW-MISSMIISENTWE---LYFYIYLLLNTVMVLMFSSMKLYFLNQVY 227
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 228 ----LSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRIsfSAIIMSH 301
Cdd:TIGR01770 354 yisdFAGLFKTNpiLAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFD 431
|
330 340 350
....*....|....*....|....*....|....*..
gi 1916859111 302 TENSWSVDIKSNKSKMILPLMTTISMMGLICTSNFML 338
Cdd:TIGR01770 432 KPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-292 |
2.71e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 82.47 E-value: 2.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 8 LLFLSSLmmGTILSISSNSWLGVWMGLEinLLSI-----IPLLTDNKNMmiNESAIKYFIIQAMASTMLL--ISIL---- 76
Cdd:COG1007 107 LLLFATL--GMMLMASANDLLTLFLGLE--LLSLslyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLygISLLygat 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 77 ----LIQMKYTMWWEKENVPSM-----MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLsycIKMS 147
Cdd:COG1007 181 gslnLAGIAAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAAL---LRLL 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 148 MFTFS------------VIMASIIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMII--SENTWELYFY--IYLLLNTV- 210
Cdd:COG1007 258 VEAFPglaadwqlllavLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgtPLGVSAALFYllAYLFMNLGa 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 211 --MVLMFSSMKLYFLNQVYLSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITL 286
Cdd:COG1007 338 faVILLLSRKGGEAEEIEDLAGLARRSplLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417
|
....*.
gi 1916859111 287 YYYMRI 292
Cdd:COG1007 418 YYYLRV 423
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-339 |
1.46e-92 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 279.40 E-value: 1.46e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 1 MYNNSMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQM 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 81 KYTMWwekENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMaSIII 160
Cdd:MTH00160 81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIIL-SAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMM 240
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 241 MLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENSWSVDIKSNKSKMILP 320
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316
|
330
....*....|....*....
gi 1916859111 321 LMTTISMMGLICTSNFMLF 339
Cdd:MTH00160 317 FLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
7-337 |
4.61e-59 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 193.50 E-value: 4.61e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 7 KLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILlIQMKYTMWW 86
Cdd:MTH00112 6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSST-TNAWNTGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 87 E----KENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPM---MTLSYCIKMSMFTFSVIMaSII 159
Cdd:MTH00112 85 DitqlTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLtllLMTSNSLNPTLLLTLAIL-STL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 160 IGAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFM 239
Cdd:MTH00112 164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 240 MMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMS--HTENSWSVDIKSNKSKM 317
Cdd:MTH00112 244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLppNTTNMMMKWRTKPKKNT 323
|
330 340
....*....|....*....|
gi 1916859111 318 ILPLMTTISMMGLICTSNFM 337
Cdd:MTH00112 324 LTATLTTLSTLLLPLSPMIL 343
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
10-340 |
1.28e-58 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 192.44 E-value: 1.28e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 10 FLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILlIQMKYTMWWEKE 89
Cdd:MTH00070 9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSST-INAWFTGEWTIM 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 90 NV----PSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMA--SIIIGAM 163
Cdd:MTH00070 88 NMqtplPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGllSTLIGGW 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 164 GGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMMMLS 243
Cdd:MTH00070 168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 244 LLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSH--TENSWSVDIKSNKSKMILPL 321
Cdd:MTH00070 248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSpnTSNSKLYWRFKNKTNNLLSL 327
|
330
....*....|....*....
gi 1916859111 322 MTTISMMGLICTSNFMLFY 340
Cdd:MTH00070 328 TIILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
8-340 |
3.32e-57 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 188.90 E-value: 3.32e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 8 LLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTMWW- 86
Cdd:MTH00105 7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTi 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 87 --EKENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTL---SYCIKMSMFTFSVIMaSIIIG 161
Cdd:MTH00105 87 tkLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqiSPSINPNLLLTLAIL-SILIG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 162 AMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMMM 241
Cdd:MTH00105 166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLIL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 242 LSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFS-AIIMSHTENSWSVDI--KSNKSKMI 318
Cdd:MTH00105 246 LTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYStSLTMFPSTNNMKMKWqfENTKPMTL 325
|
330 340
....*....|....*....|..
gi 1916859111 319 LPLMTTISMMGLICTSNFMLFY 340
Cdd:MTH00105 326 LPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
3-340 |
1.27e-56 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 187.45 E-value: 1.27e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 3 NNSMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKY 82
Cdd:MTH00041 2 NRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 83 TMWW---EKENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMA--S 157
Cdd:MTH00041 82 GSWSingPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGilS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 158 IIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIK 237
Cdd:MTH00041 162 VLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 238 FMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENS-----WSVDIKS 312
Cdd:MTH00041 242 FLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSislfsWRNSGNI 321
|
330 340
....*....|....*....|....*...
gi 1916859111 313 NKSKMILPLMTTISMMGLICTSNFMLFY 340
Cdd:MTH00041 322 TVYGVILSILSSISILGLLLIPLFLSFL 349
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
5-331 |
8.47e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 171.61 E-value: 8.47e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 5 SMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTM 84
Cdd:MTH00144 4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 85 WWEkenvpSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCI---KMSMFTFSVIMASIIIG 161
Cdd:MTH00144 84 WFS-----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlyWLAYLLCVISVLSALVG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 162 AMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVyLSGNMKTEIKFMMM 241
Cdd:MTH00144 159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL-GSLKPSYKTGLSII 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 242 LSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIImshtenSWSVDIKSNKSKMILPL 321
Cdd:MTH00144 238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL------SSSKSKKSNSSKVLNSS 311
|
330
....*....|
gi 1916859111 322 MTTISMMGLI 331
Cdd:MTH00144 312 IISLNLLGGL 321
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
9-330 |
8.27e-50 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 169.60 E-value: 8.27e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 9 LFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLI-SILLIQMkyTMWWE 87
Cdd:MTH00135 8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFaSTTNAWL--TGQWD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 88 ----KENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMmTLSYCIKMSMFTFSVIM--ASIIIG 161
Cdd:MTH00135 86 iqqmSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLglTSTLVG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 162 AMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMMM 241
Cdd:MTH00135 165 GWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTP 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 242 LSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSA--IIMSHTENS---WSvdIKSNKSK 316
Cdd:MTH00135 245 LILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMtlTISPNTLNGttpWR--LPSTQLT 322
|
330
....*....|....
gi 1916859111 317 MILPLMTTISMMGL 330
Cdd:MTH00135 323 LPLAISTTATLMLL 336
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
6-339 |
7.30e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 167.07 E-value: 7.30e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 6 MKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTMW 85
Cdd:MTH00200 5 ILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 86 WEKE---NVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLS--YCIKMSMFTFSVIMASIII 160
Cdd:MTH00200 85 GISEmlgPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMM 240
Cdd:MTH00200 165 GGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 241 MLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMS--HTENSWSVDIKSNKSKMI 318
Cdd:MTH00200 245 GLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLspNQINMMSSWRTKSNSNLL 324
|
330 340
....*....|....*....|.
gi 1916859111 319 LPLMTTISMMGLICTSNFMLF 339
Cdd:MTH00200 325 VGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-328 |
1.25e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 166.00 E-value: 1.25e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 9 LFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTMwwek 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 89 ENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMASIIIGAMGGLNQ 168
Cdd:MTH00197 78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 169 TSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMMMLSLLSLG 248
Cdd:MTH00197 158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 249 GLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENSWSVDIKSNKSKMILPLMTTISMM 328
Cdd:MTH00197 238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPLL 317
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
8-323 |
5.39e-47 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 161.87 E-value: 5.39e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 8 LLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTMwwe 87
Cdd:MTH00011 9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSL--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 88 KENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYC--IKMSMFTFSVIMASIIIGAMGG 165
Cdd:MTH00011 86 LKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAGGLGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 166 LNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMKTEIKFMMMLSLL 245
Cdd:MTH00011 166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1916859111 246 SLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSAIIMSHTENSWSVDIKSNKSKMILPLMT 323
Cdd:MTH00011 246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILISMCT 323
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-292 |
3.57e-21 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 92.79 E-value: 3.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 16 MGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMIN-ESAIKYFIIQAMASTMLL------------ISILLIQMKY 82
Cdd:MTH00196 4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLfgcallcgttggLHLSYINLVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 83 TMWWEKENV----PSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTL-SYCIKMSMFTFSVIMaS 157
Cdd:MTH00196 84 NSGQSFSSVsvpiGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILvSIGLNVNILLIGGLF-S 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 158 IIIGAMGGLNQTSLRQIMAYSSISHLGWMISSM----IISENTWELYFYIYLLLNTVMVLMFSSMKLYFLNQVYLSGNMK 233
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSGLSR 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1916859111 234 TE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRI 292
Cdd:MTH00196 243 RLpiLAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-280 |
1.54e-20 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 90.07 E-value: 1.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 24 SNSWLGVWMGLEINLLSIIPLLTDNKNMMI-NESAIKYFIIQAMASTMLLISILLI-----------QMKYTMWWEKENV 91
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRsSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdeLSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 92 PSM---MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILL-TWQKIAPMMTL-------SYCIKMSMFTFSVIMASIII 160
Cdd:pfam00361 81 LLLlflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 161 GAMGGLNQTSLRQIMAYSSISHLGWMISSM----IISENTWELYFYIYLLLNTVMVLMFSSMKL------YFLNQVYLSG 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYrrvhtrNIRDYGGLAK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1916859111 231 NMKTeIKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVT 280
Cdd:pfam00361 241 TMPI-LALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
17-338 |
7.66e-18 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 83.84 E-value: 7.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 17 GTILSISSNSWLGVWMGLEINLLSIIPLLT-DNKNMMINESAIKYFIIQAMASTMLLISILLIQ-----------MKYTM 84
Cdd:TIGR01770 114 GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgslnfedlLLFLS 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 85 WWEKENVPSMM----IMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIA---PMMTLSYCI------KMSMFTF 151
Cdd:TIGR01770 194 NGMLNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfgfseAWQIFLA 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 152 SVIMASIIIGAMGGLNQTSLRQIMAYSSISHLGW-MISSMIISENTWE---LYFYIYLLLNTVMVLMFSSMKLYFLNQVY 227
Cdd:TIGR01770 274 IIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGIKavlFYIFIYALMSLGAFGVLSLLRSYKDEWIE 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 228 ----LSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRIsfSAIIMSH 301
Cdd:TIGR01770 354 yisdFAGLFKTNpiLAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV--VKVMYFD 431
|
330 340 350
....*....|....*....|....*....|....*..
gi 1916859111 302 TENSWSVDIKSNKSKMILPLMTTISMMGLICTSNFML 338
Cdd:TIGR01770 432 KPERRIPSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-292 |
2.71e-17 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 82.47 E-value: 2.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 8 LLFLSSLmmGTILSISSNSWLGVWMGLEinLLSI-----IPLLTDNKNMmiNESAIKYFIIQAMASTMLL--ISIL---- 76
Cdd:COG1007 107 LLLFATL--GMMLMASANDLLTLFLGLE--LLSLslyvlVAFRRDDRRS--SEAALKYFLLGALSSGFLLygISLLygat 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 77 ----LIQMKYTMWWEKENVPSM-----MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLsycIKMS 147
Cdd:COG1007 181 gslnLAGIAAALAAGGANSPLLllglvLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAAL---LRLL 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 148 MFTFS------------VIMASIIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMII--SENTWELYFY--IYLLLNTV- 210
Cdd:COG1007 258 VEAFPglaadwqlllavLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgtPLGVSAALFYllAYLFMNLGa 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 211 --MVLMFSSMKLYFLNQVYLSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITL 286
Cdd:COG1007 338 faVILLLSRKGGEAEEIEDLAGLARRSplLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417
|
....*.
gi 1916859111 287 YYYMRI 292
Cdd:COG1007 418 YYYLRV 423
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
8-292 |
1.70e-15 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 77.17 E-value: 1.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 8 LLFLSSLMmGTILSISSNSWLGVWMGLEinLLSIiPLLT----DNKNMMINESAIKYFIIQAMASTMLLISILLI----- 78
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLE--LLSL-PLYAlaalRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatg 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 79 -----QMKYTMWWEKENVPSM-----MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIA---PMMTLSYCIK 145
Cdd:PRK05777 183 slsfaGIAKALADGSGNSLLLlfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaVLLRLLVVAF 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 146 MSMFTFSVIM------ASIIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMIIseNTWE------LYFYIYLLLNT---V 210
Cdd:PRK05777 263 GGLSEDWQQVlaiiaiASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAA--GTAEgysavlFYLLAYLFMTLgafG 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 211 MVLMFSSMKLYFLNQVYLSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYY 288
Cdd:PRK05777 341 VISLLRRKGGEAESISDFAGLSKRSplLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFY 420
|
....
gi 1916859111 289 YMRI 292
Cdd:PRK05777 421 YLRV 424
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
16-292 |
4.14e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 75.82 E-value: 4.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 16 MGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMIN-ESAIKYFIIQAMASTMLLISILLIqmkYTMWWEK------ 88
Cdd:MTH00199 108 LGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAYStEAGLKYFVLGAVSSGLFLFGCALL---YGLTGETsiqgin 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 89 ----ENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMASIIIGAMG 164
Cdd:MTH00199 185 siltGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 165 GLNQTSLRQIMAYSSISHLGWMISSMIISENTWELYFYIYLLLNTVM-VLMFS---SMKLYFLNQVYLSGNMKTE--IKF 238
Cdd:MTH00199 265 ALNQTKIKRLLAYSGIGHMGFILFGVAIGSFESIQASLIYMIIYVIMsICSFSiilSLKLTKGLIVEVSGLSRKNpvIAL 344
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1916859111 239 MMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRI 292
Cdd:MTH00199 345 TLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
16-292 |
3.72e-13 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 70.27 E-value: 3.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 16 MGTILSISSNSWLGVWMGLEINLLSIIPL---------LTDNKNMMINESAIKYFIIQAMASTMLLI------------- 73
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFgcalyfgftgneg 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 74 ---SILLIQMKYT-MWWEKENVPSMMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMF 149
Cdd:MTH00198 279 mlgTILSATLETTnIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 150 TFSVIMASIIIGAMGGLNQTSLRQIMAYSSISHLGWMIssMIISENTWE------LYFYIYLLLNTVMVLMFSSMK---- 219
Cdd:MTH00198 359 LLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL--IGVSAGTYEslqaswTYAVTYLVSALASFTVICTLEefgt 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 220 -----------------LYFLNQVYLSGNMKTEIKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMM------- 275
Cdd:MTH00198 437 rtptsrqrdgsfgnynlVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLsiyylva 516
|
330
....*....|....*..
gi 1916859111 276 FLMVTFTTITLYYYMRI 292
Cdd:MTH00198 517 LFAIICTCISAFYYIRI 533
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
10-292 |
3.73e-08 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 54.38 E-value: 3.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 10 FLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKY-TMWWE- 87
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATgTLNMAd 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 88 -----KENVPSMMIMSSMLL------KMGAAPFHFWLPEVMGS-----SSWMNCL--------ILLTWQKIAPMMTLSYc 143
Cdd:COG0651 192 laarlAELDPGLLLAAFALLlvgfgiKAALFPLHFWLPDAYPAapspvSALLSGLltkvgvyaILRVLTLLFGADPALF- 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 144 ikMSMFTFSVIMASIIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMIISeNTWELYFYIYLLLNTVMV--LMFSS---- 217
Cdd:COG0651 271 --LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLG-TPLGLAGALFHLLNHALAkaLLFLAagai 347
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1916859111 218 -MKLYFLNQVYLSGNMKTE--IKFMMMLSLLSLGGLPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRI 292
Cdd:COG0651 348 eRATGTRDLDKLGGLGKRMplTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
55-187 |
2.22e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 45.86 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 55 ESAIKYFIIQAMASTMLLISILLI-------QMKYTMWWEKENVPSM------MIMSSMLLKMGAAPFHFWLPEV--MGS 119
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALLygqygtlNMAYLAVKMSENPTVVakialaLFIAGLAMKSGAVPVHMWLPDAypAAP 251
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1916859111 120 SSWMNCLILLTWQKIAPMMTLSYCI---KMSMFTFSVIM-----ASIIIGAMGGLNQTSLRQIMAYSSISHLGWMI 187
Cdd:PRK08376 252 SSISAMLLVIKQAGLYALARVLFSIygpAINLATVGWVIiilgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYML 327
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-187 |
4.14e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 45.26 E-value: 4.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 34 LEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMK---YTMWWEKENVPSM--------MIMSSMLL 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVtgtLNMADLAGALAENptvvtafgFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 103 KMGAAPFHFWLPEVM-GSSSWMNCLILLTWQKIAPMMTlsYCIKMSMFTFSVI-------------MASIIIGAMGGLNQ 168
Cdd:PRK08375 215 KAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYAL--IRIYFTVFGGDFRfalglgwllavlaLLSMLVGSLAALGQ 292
|
170
....*....|....*....
gi 1916859111 169 TSLRQIMAYSSISHLGWMI 187
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYIL 311
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
91-187 |
2.05e-04 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 43.11 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 91 VPSMMIMSSMLLKMGAAPFHFWLPEVMGSsswmnclilltwqkIAPMMTLSYCIKMS------MFTFSVIMASI------ 158
Cdd:PRK12650 209 VVAVLIAVAAFTKSAQFPFHFWLPEAMAA--------------ITPVSAFLHAAAVVkagiylLLRFSPVFHDVavwnwl 274
|
90 100 110
....*....|....*....|....*....|....*...
gi 1916859111 159 ---------IIGAMGGLNQTSLRQIMAYSSISHLGWMI 187
Cdd:PRK12650 275 liivgmitaLMGAVFAVQKTDLKKLTAYSTVSQLGWIV 312
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
8-187 |
1.10e-03 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 40.69 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 8 LLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMineSAIKYFIIQAMASTMLLISILLIQMKYTMW-- 85
Cdd:TIGR01972 112 LLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIY---AAMKFFLYTLAGSLLMLLAILGLYFLGGGTfd 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 86 ---WEKENVPS-------MMIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILL-TWQKIAPMMTLSYCIKM---SMFTF 151
Cdd:TIGR01972 189 lleLLNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAgVLLKMGTYGFLRFNLPLfpdASLYF 268
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1916859111 152 SVIMA-----SIIIGAMGGLNQTSLRQIMAYSSISHLGWMI 187
Cdd:TIGR01972 269 APVLAalgviAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
95-278 |
1.40e-03 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 39.85 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 95 MIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKIAPMMTLSYCIKMSMFTFSVIMASIIIGAMggLNQTSLRQI 174
Cdd:MTH00091 62 FQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQM--FLLKSYKNL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 175 MAYSSISHLGWMISSMIISENTwelYFYIYLLLNTVMVLMFSSMklyflnqvylsgNMKTEIKFMMMLSLLSLGGLPPML 254
Cdd:MTH00091 140 LILSSTESFNWLILSFFFSFFN---VFFLFFYYFLLMLFLIPKF------------NNVNKLNFVSWETLLVFMNLPFSV 204
|
170 180
....*....|....*....|....
gi 1916859111 255 GFLPKWIVIQSLVDNNMTTMMFLM 278
Cdd:MTH00091 205 TFFVKIFSLSEILKVLGFFLLFLL 228
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
28-296 |
1.49e-03 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 40.32 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 28 LGVWmgLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILL------------IQMKYTmwwEKENVPSMM 95
Cdd:PRK12663 133 LYVW--FEVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLlygtfgtlnmahIAMRLN---DMGDTATLT 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 96 IMSSMLL-----KMGAAPFhFWLPevmGSSSWMNCLI------LLT----WQKIAPMMTLSYCIKMSMFTFSVIMASI-- 158
Cdd:PRK12663 208 TIALLFLlafgmKAALFPF-MWLP---AAYHTPNTEVaalfaaLLTkvgiYALIRVFTLLFPQERELLHPLLATMAAItm 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 159 IIGAMGGLNQTSLRQIMAYSSISHLGWMISSMIISeNTWELYFYIYLLLNTVMVLMFssmkLYFLNQV-----------Y 227
Cdd:PRK12663 284 VIGALGALAYKDIRRIAGYQVISSIGFILLGLALG-TPAGINGAIFYLVHDMVVKTA----LFLIAGSlvrltgyrslqY 358
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1916859111 228 LSGNMKTEIKFMMMLSLLSLGG--LPPMLGFLPKWIVIQSLVDNNMTTMMFLMVTFTTITLYYYMRISFSA 296
Cdd:PRK12663 359 LGGLYRKEPLFGALFLILIFAIggLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLA 429
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
57-184 |
1.83e-03 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 40.06 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 57 AIKYFIIQAMASTMLLISILLIQMKYTMW------WEKENVPS---MMIMSSMLL----KMGAAPFHFWLPEVMGSSS-- 121
Cdd:COG1008 163 AIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaeLAAAPLPLtaqLLLFLAFFIafavKVPMFPFHTWLPDAHVEAPta 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 122 -------------------WMNCLILLTWQKIAPMMtlsycikmsmFTFSVImaSIIIGAMGGLNQTSLRQIMAYSSISH 182
Cdd:COG1008 243 gsvllagvllkmggygllrFALPLFPEASAYFAPLL----------AALGVI--GIIYGALVALAQTDLKRLIAYSSVSH 310
|
..
gi 1916859111 183 LG 184
Cdd:COG1008 311 MG 312
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
57-187 |
3.21e-03 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 39.03 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 57 AIKYFIIQAMASTMLLISILLIQMKYTMW--------WEKENVPSMM-------IMSSMLLKMGAAPFHFWLPEVMGSS- 120
Cdd:PRK05846 163 ATKFFLYTLLGSLLMLVAIIYLVVVYYNAtgtfdiadLLNLPLPPGVqywlflaFFIAFAVKMPMFPLHTWLPDAHVQAp 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 121 ---SWMNCLILLtwqKIAPMMTLSYCIKMS----------MFTFSVIMasIIIGAMGGLNQTSLRQIMAYSSISHLGWMI 187
Cdd:PRK05846 243 tagSVLLAGILL---KMGAYGLLRFSLPLFpdashefapiIITLGVIA--IIYGALVALAQTDIKKLIAYSSISHMGFVT 317
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
3-185 |
5.54e-03 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 38.44 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 3 NNSMKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLS--IIPLLTDNKNmmiNESAIKYFIIQAMASTMLLISILLIQM 80
Cdd:PRK08668 96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfMMVPMGKKES---RKASLKYFVLSAIGAYAMLYAIFLIYA 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 81 KYTMWWEKENVPSMM--------------IMSSMLLKMGAAPFHFWLPEVMGSS------------SWMNCLILLTWQKI 134
Cdd:PRK08668 173 KTGTFDFADISQGLIndtstgfalivflfLLAFGVAKAGIFPLHVWAPDAYSEApqsfsavlsgqlSKLGAYGFLLVLYV 252
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1916859111 135 APMMTL--SYCIKMSMFTFSVIMA-----SIIIGAMGGLNQTSLRQIMAYSSISHLGW 185
Cdd:PRK08668 253 LPGTKLfsEFGTYRGVPLFNYILAwlgniSIIVGTLMAILQEDIKKLIAYSSVANGGY 310
|
|
| ND2 |
MTH00059 |
NADH dehydrogenase subunit 2; Provisional |
14-134 |
7.21e-03 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177131 Cd Length: 289 Bit Score: 37.60 E-value: 7.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 14 LMMGTILSISSNSWLGVWMGLEINLLSIIP--LLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYTMwwekenv 91
Cdd:MTH00059 15 SLFFCLLCLVSDSLLGFWVFLELCGLSLIPcfFLSSNSNVLNFYSSLLSYIVMSGLSSSLLVSGLLFSDLYFF------- 87
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1916859111 92 psmmIMSSMLLKMGAAPFHFWLPEVMGSSSWMNCLILLTWQKI 134
Cdd:MTH00059 88 ----IFFGFVVKFGLFPFMFWVYRVFSNSSWVVIWLISVVMKF 126
|
|
| ND4 |
MTH00127 |
NADH dehydrogenase subunit 4; Provisional |
6-192 |
9.32e-03 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177186 [Multi-domain] Cd Length: 459 Bit Score: 37.63 E-value: 9.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 6 MKLLFLSSLMMGTILSISSNSWLGVWMGLEINLLSIIPLLTDNKNMMINESAIKYFIIQAMASTMLLISILLIQMKYT-- 83
Cdd:MTH00127 95 MYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTgt 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916859111 84 --MWWEKENVPSMMI-----------MSSMLLKMGAAPFHFWLPE------VMGSSSWMNCLILLTWQKIAPMMTLSYCI 144
Cdd:MTH00127 175 lsMLTLQYSQPLQLSswadklwwagcLLAFLVKMPLYGVHLWLPKahveapIAGSMVLAAVLLKLGGYGMMRMMVMLDPL 254
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1916859111 145 KMSMFTFSVIMA--SIIIGAMGGLNQTSLRQIMAYSSISHLGWMISSMII 192
Cdd:MTH00127 255 TKELSYPFIILAlwGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILI 304
|
|
|