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Conserved domains on  [gi|1933122718|gb|QPD01045|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Eremippus miramae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-87 1.41e-40

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 139.89  E-value: 1.41e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   1 GYQKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:MTH00165  289 GFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMV 368


                  ....*..
gi 1933122718  81 CLSWINC 87
Cdd:MTH00165  369 SMSNLNF 375
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-87 1.41e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 139.89  E-value: 1.41e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   1 GYQKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:MTH00165  289 GFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMV 368


                  ....*..
gi 1933122718  81 CLSWINC 87
Cdd:MTH00165  369 SMSNLNF 375
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 6-78 8.27e-28

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 104.85  E-value: 8.27e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILE 397
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 6-78 5.99e-25

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 96.97  E-value: 5.99e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:TIGR01974 328 AIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILE 400
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 4-80 8.56e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 80.82  E-value: 8.56e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933122718   4 KLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:pfam00361 199 QAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA 275
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-87 1.41e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 139.89  E-value: 1.41e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   1 GYQKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:MTH00165  289 GFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMV 368


                  ....*..
gi 1933122718  81 CLSWINC 87
Cdd:MTH00165  369 SMSNLNF 375
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-86 4.15e-33

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 119.56  E-value: 4.15e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   1 GYQKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:MTH00151  286 GMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESS 365


                  ....*.
gi 1933122718  81 CLSWIN 86
Cdd:MTH00151  366 LMSPTS 371
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 4-86 7.69e-33

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 119.11  E-value: 7.69e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   4 KLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLS 83
Cdd:MTH00004  322 QLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTS 401


                  ...
gi 1933122718  84 WIN 86
Cdd:MTH00004  402 YLN 404
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 5-86 1.08e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 113.02  E-value: 1.08e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   5 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLSW 84
Cdd:MTH00108  324 LAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSY 403


                  ..
gi 1933122718  85 IN 86
Cdd:MTH00108  404 TN 405
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-78 1.30e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 112.55  E-value: 1.30e-30
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122718   1 GYQKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:MTH00207  289 GMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-86 2.51e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 111.66  E-value: 2.51e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   1 GYQKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:MTH00209  285 NQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESM 364


                  ....*.
gi 1933122718  81 CLSWIN 86
Cdd:MTH00209  365 LESNMP 370
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 5-86 4.02e-30

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 111.46  E-value: 4.02e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   5 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLSW 84
Cdd:MTH00137  329 LAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSH 408


                  ..
gi 1933122718  85 IN 86
Cdd:MTH00137  409 LN 410
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 5-86 7.74e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 107.75  E-value: 7.74e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   5 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLSW 84
Cdd:MTH00208  350 LALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASI 429


                  ..
gi 1933122718  85 IN 86
Cdd:MTH00208  430 SN 431
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 5-87 1.19e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 107.30  E-value: 1.19e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   5 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLSW 84
Cdd:MTH00066  321 LAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSN 400


                  ...
gi 1933122718  85 INC 87
Cdd:MTH00066  401 LNS 403
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-86 7.16e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 105.03  E-value: 7.16e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   1 GYQKLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:MTH00211  314 NQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESM 393


                  ....*.
gi 1933122718  81 CLSWIN 86
Cdd:MTH00211  394 NGSYLN 399
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-78 7.84e-28

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 104.86  E-value: 7.84e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122718   1 GYQkLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK06590  328 AYA-AAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE 404
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 6-78 8.27e-28

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 104.85  E-value: 8.27e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:COG1009   326 ALFHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILE 397
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 5-79 8.16e-26

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 99.38  E-value: 8.16e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122718   5 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEM 79
Cdd:MTH00020  324 ISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILEL 398
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 6-80 4.14e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 97.39  E-value: 4.14e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:MTH00210  326 SLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELT 400
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 6-78 5.99e-25

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 96.97  E-value: 5.99e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:TIGR01974 328 AIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILE 400
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
8-77 4.45e-23

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 91.62  E-value: 4.45e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122718   8 FHLLSHALFKALLFMCAGSMIHNLKDT--------QDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 77
Cdd:PRK07376  344 FHLMTHAYFKAMLFLGSGSVIHGMEEVvghdpvlaQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEIL 421
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-79 5.36e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 82.70  E-value: 5.36e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   1 GYQKLAFFHLLSHALFKALLFMCAGSMIHNLK-DTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEM 79
Cdd:MTH00032  336 GSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 4-80 8.56e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 80.82  E-value: 8.56e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933122718   4 KLAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:pfam00361 199 QAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA 275
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 6-78 1.72e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.57  E-value: 1.72e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:COG0651   326 ALFHLLNHALAKALLFLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
ndhF CHL00025
NADH dehydrogenase subunit 5
 6-77 5.73e-17

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 74.16  E-value: 5.73e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNL--------KDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 77
Cdd:CHL00025  342 ALFHLITHAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEIL 421
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 6-83 3.59e-14

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 66.07  E-value: 3.59e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLS 83
Cdd:PRK06521  341 ALYHLLNHALFKSLLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-78 1.19e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 64.61  E-value: 1.19e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK12667  349 ALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFN 420
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 6-78 2.37e-13

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 63.98  E-value: 2.37e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK08667  335 ALFHSLNHALFKSLLFLTAGSVVHAT-GTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 5-72 4.38e-13

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 63.01  E-value: 4.38e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122718   5 LAFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYS 72
Cdd:PRK07390  334 IALLLLLTHAIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA 400
PRK12650 PRK12650
DUF4040 family protein;
6-78 2.09e-12

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 61.21  E-value: 2.09e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK12650  326 AVVHTLAHALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
6-77 2.57e-12

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 60.68  E-value: 2.57e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 77
Cdd:PRK12668  294 AVAHAFNHILYKGLLFMSAGAVLYRTG-TEKLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK12646 PRK12646
DUF4040 family protein;
6-78 3.86e-12

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 60.54  E-value: 3.86e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK12646  342 ALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 6-78 4.73e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 60.20  E-value: 4.73e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK12648  325 AIFHIINHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMFFA 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-80 5.07e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.11  E-value: 5.07e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:PRK08376  353 GIYHIVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESS 426
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 6-78 8.90e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 59.46  E-value: 8.90e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK12649  336 ATFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 6-80 1.21e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 58.85  E-value: 1.21e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKDTQdIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:PRK08668  326 GLFHVFNHALFKGLFFLIFAAVIYRTGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL 399
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-78 2.70e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 57.97  E-value: 2.70e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK08375  325 GLLHLLHHALMKGALFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVV 396
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 4-78 7.72e-11

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 56.47  E-value: 7.72e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122718   4 KLAFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK12647  311 KAAVLFLVAHSLYKGALFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 6-77 1.57e-10

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 55.93  E-value: 1.57e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINfMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 77
Cdd:PRK08377  327 GVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII 397
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 6-80 3.23e-10

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 54.93  E-value: 3.23e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:PRK12645  341 AIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESM 414
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-78 1.31e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 53.03  E-value: 1.31e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHnLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK07691  329 AIYYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-83 1.88e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 52.51  E-value: 1.88e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSmIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMVCLS 83
Cdd:PRK06589  334 AILHLVSHSFAKICLFYSMGS-IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQ 410
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 10-80 2.43e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 52.23  E-value: 2.43e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1933122718  10 LLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEMV 80
Cdd:PRK12644  325 LLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAV 394
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-78 5.14e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 51.49  E-value: 5.14e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1933122718   8 FHLLSHALFKALLFMCAGSmIHNLKDTQDIRFMGSIINFMPLTsicfnVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK07234  293 LYALAHGLVKSTLFLCAGA-LPSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 6-77 2.85e-08

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 49.20  E-value: 2.85e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 77
Cdd:PRK06525  329 SIAYIFNHAFAKSLFFLVAGALSYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 6-77 1.56e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.12  E-value: 1.56e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 77
Cdd:PRK05846  331 AIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL 401
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 5-79 2.10e-07

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 46.83  E-value: 2.10e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1933122718   5 LAFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILEM 79
Cdd:MTH00095  277 VSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILEL 351
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 8-70 7.55e-07

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 45.20  E-value: 7.55e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   8 FHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGF 70
Cdd:PRK08042  312 YHLLNHSLFKSVLFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 6-77 1.16e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 41.84  E-value: 1.16e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNlKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 77
Cdd:PRK06458  335 ALLHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
6-78 8.47e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.63  E-value: 8.47e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSmIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK06277  320 GIFHAINHVIYKSALFLGAGI-VSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-73 2.36e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.18  E-value: 2.36e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLkDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSK 73
Cdd:PRK12662  333 AVAYIVNHSIVKSALFMVSGSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-78 3.78e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 37.64  E-value: 3.78e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGsMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLILE 78
Cdd:PRK12665  327 AIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-73 9.17e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 36.63  E-value: 9.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSK 73
Cdd:COG1007   323 ALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
6-77 1.00e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 36.47  E-value: 1.00e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHnLKDTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYSKDLIL 77
Cdd:PRK12663  326 AIFYLVHDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 6-72 6.27e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 34.24  E-value: 6.27e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1933122718   6 AFFHLLSHALFKALLFMCAGSMIHNLKdTQDIRFMGSIINFMPLTSICFNVSSLSLCGIPFLAGFYS 72
Cdd:PRK12561  305 AMLQMISHGLIAAALFFLTGVTYERTH-TLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVS 370
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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